Project acronym CARBENZYMES
Project Probing the relevance of carbene binding motifs in enzyme reactivity
Researcher (PI) Martin Albrecht
Host Institution (HI) UNIVERSITY COLLEGE DUBLIN, NATIONAL UNIVERSITY OF IRELAND, DUBLIN
Call Details Starting Grant (StG), PE4, ERC-2007-StG
Summary Histidine (His) is an ubiquitous ligand in the active site of metalloenzymes that is assumed by default to bind the metal center through one of its nitrogen atoms. However, protonation of His, which is likely to occur in locally slightly acidic environment, gives imidazolium sites that can bind a metal in a carbene-type structure as found in N-heterocyclic carbene complexes. Such carbene bonding has a dramatic effect on the properties of the metal center and may provide a rational for the mode of action of metalloenzymes that are still lacking a solid understanding. Up to now, the possibility of carbene bonding has been completely overlooked. Hence, any evidence for such His coordination via carbon will induce a shift of paradigm in classical peptide chemistry and will be directly included in basic textbooks. Moreover, this unprecedented bonding mode will provide access to unique and hitherto unknown reactivity patterns for artificial enzyme mimics. Undoubtedly, such a break-through will set a new stage in modern metalloenzyme research. A multicentered approach is proposed to identify for the first time carbene bonding in enzymes. This approach unconventionally combines the current frontiers of organometallic and biochemical knowledge and hence crosses traditional boarders. Specifically, we aim at probing carbene bonding of His by identifying reactivity patterns that are selective for metal-carbenes but not for metal-imine complexes. This will allow for efficient screening of large classes of metalloenzymes. In parallel, active site models will be constructed in which the His ligand is substituted by a heterocyclic carbene as a rigidly C-bonding His analog. For this purpose chemical synthesis will be considered as well as enzyme mutagenesis and subsequent carbene coordination. While such new bioorganometallic entities will be highly attractive to probe the influence of C-bound His on the metal site, they also provide conceputally new types of versatile catalysts.
Summary
Histidine (His) is an ubiquitous ligand in the active site of metalloenzymes that is assumed by default to bind the metal center through one of its nitrogen atoms. However, protonation of His, which is likely to occur in locally slightly acidic environment, gives imidazolium sites that can bind a metal in a carbene-type structure as found in N-heterocyclic carbene complexes. Such carbene bonding has a dramatic effect on the properties of the metal center and may provide a rational for the mode of action of metalloenzymes that are still lacking a solid understanding. Up to now, the possibility of carbene bonding has been completely overlooked. Hence, any evidence for such His coordination via carbon will induce a shift of paradigm in classical peptide chemistry and will be directly included in basic textbooks. Moreover, this unprecedented bonding mode will provide access to unique and hitherto unknown reactivity patterns for artificial enzyme mimics. Undoubtedly, such a break-through will set a new stage in modern metalloenzyme research. A multicentered approach is proposed to identify for the first time carbene bonding in enzymes. This approach unconventionally combines the current frontiers of organometallic and biochemical knowledge and hence crosses traditional boarders. Specifically, we aim at probing carbene bonding of His by identifying reactivity patterns that are selective for metal-carbenes but not for metal-imine complexes. This will allow for efficient screening of large classes of metalloenzymes. In parallel, active site models will be constructed in which the His ligand is substituted by a heterocyclic carbene as a rigidly C-bonding His analog. For this purpose chemical synthesis will be considered as well as enzyme mutagenesis and subsequent carbene coordination. While such new bioorganometallic entities will be highly attractive to probe the influence of C-bound His on the metal site, they also provide conceputally new types of versatile catalysts.
Max ERC Funding
1 249 808 €
Duration
Start date: 2008-07-01, End date: 2013-06-30
Project acronym HIGHACCTC
Project High-accuracy models in theoretical chemistry
Researcher (PI) Mihály Kállay
Host Institution (HI) BUDAPESTI MUSZAKI ES GAZDASAGTUDOMANYI EGYETEM
Call Details Starting Grant (StG), PE4, ERC-2007-StG
Summary Even today, quantum chemical calculations with experimental accuracy are only feasible for small molecules. This statement is especially true if the considered molecule is far from the equilibrium structure, where the overwhelming majority of quantum chemical models break down. The main purpose of this proposal is to develop new quantum chemical methods that are applicable to at least medium-sized molecules and simultaneously provide results sufficiently close to the experimental data and are capable of describing entire potential energy surfaces. The accuracy goal will be achieved through the reduction of the computational cost of high-precision quantum chemical calculations, which are currently practical for molecules of up to 15 atoms. The cost reduction will be accomplished principally by decreasing the number of numerical parameters to be optimized without sacrificing accuracy. To this end, the negligible parameters will be identified and dropped by adopting the corresponding techniques of computer science. The correct behavior of the models for distorted structures will be ensured by developing new approaches that use a linear combination of functions rather than a single function as a starting point for the description of electronic states. Since the programming work associated with the implementation of the proposed schemes is very complex, the project will rely on the automated programming tools previously developed by the proposer. In addition to the outlined challenging tasks, the proposal aims to implement several more straightforward objectives. In particular, the high-accuracy calculations will be extended to molecular properties that are presently not available. Furthermore, the developed methods will be applied to real-life problems, especially in the field of spectroscopy and atmospheric chemistry.
Summary
Even today, quantum chemical calculations with experimental accuracy are only feasible for small molecules. This statement is especially true if the considered molecule is far from the equilibrium structure, where the overwhelming majority of quantum chemical models break down. The main purpose of this proposal is to develop new quantum chemical methods that are applicable to at least medium-sized molecules and simultaneously provide results sufficiently close to the experimental data and are capable of describing entire potential energy surfaces. The accuracy goal will be achieved through the reduction of the computational cost of high-precision quantum chemical calculations, which are currently practical for molecules of up to 15 atoms. The cost reduction will be accomplished principally by decreasing the number of numerical parameters to be optimized without sacrificing accuracy. To this end, the negligible parameters will be identified and dropped by adopting the corresponding techniques of computer science. The correct behavior of the models for distorted structures will be ensured by developing new approaches that use a linear combination of functions rather than a single function as a starting point for the description of electronic states. Since the programming work associated with the implementation of the proposed schemes is very complex, the project will rely on the automated programming tools previously developed by the proposer. In addition to the outlined challenging tasks, the proposal aims to implement several more straightforward objectives. In particular, the high-accuracy calculations will be extended to molecular properties that are presently not available. Furthermore, the developed methods will be applied to real-life problems, especially in the field of spectroscopy and atmospheric chemistry.
Max ERC Funding
500 000 €
Duration
Start date: 2008-07-01, End date: 2013-06-30
Project acronym HybridSolarFuels
Project Efficient Photoelectrochemical Transformation of CO2 to Useful Fuels on Nanostructured Hybrid Electrodes
Researcher (PI) Csaba JANAKY
Host Institution (HI) Szegedi Tudomanyegyetem - Hungarian-Netherlands School of Educational Management
Call Details Starting Grant (StG), PE4, ERC-2016-STG
Summary Given that CO2 is a greenhouse gas, using the energy of sunlight to convert CO2 to transportation fuels (such as methanol) represents a value-added approach to the simultaneous generation of alternative fuels and environmental remediation of carbon emissions. Photoelectrochemistry has been proven to be a useful avenue for solar water splitting. CO2 reduction, however, is multi-electron in nature (e.g., 6 e- to methanol) with considerable kinetic barriers to electron transfer. It therefore requires the use of carefully designed electrode surfaces to accelerate e- transfer rates to levels that make practical sense. In addition, novel flow-cell configurations have to be designed to overcome mass transport limitations of this reaction.
We are going to design and assemble nanostructured hybrid materials to be simultaneously applied as both adsorber and cathode-material to photoelectrochemically convert CO2 to valuable liquid fuels. The three main goals of this project are to (i) gain fundamental understanding of morphological-, size-, and surface functional group effects on the photoelectrochemical (PEC) behavior at the nanoscale (ii) design and synthesize new functional hybrid materials for PEC CO2 reduction, (iii) develop flow-reactors for PEC CO2 reduction. Rationally designed hybrid nanostructures of large surface area p-type semiconductors (e.g., SiC, CuMO2, or CuPbI3) and N-containing conducting polymers (e.g., polyaniline-based custom designed polymers) will be responsible for: (i) higher photocurrents due to facile charge transfer and better light absorption (ii) higher selectivity towards the formation of liquid fuels due to the adsorption of CO2 on the photocathode (iii) better stability of the photocathode. The challenges are great, but the possible rewards are enormous: performing CO2 adsorption and reduction on the same system may lead to PEC cells which can be deployed directly at the source point of CO2, which would go well beyond the state-of-the-art.
Summary
Given that CO2 is a greenhouse gas, using the energy of sunlight to convert CO2 to transportation fuels (such as methanol) represents a value-added approach to the simultaneous generation of alternative fuels and environmental remediation of carbon emissions. Photoelectrochemistry has been proven to be a useful avenue for solar water splitting. CO2 reduction, however, is multi-electron in nature (e.g., 6 e- to methanol) with considerable kinetic barriers to electron transfer. It therefore requires the use of carefully designed electrode surfaces to accelerate e- transfer rates to levels that make practical sense. In addition, novel flow-cell configurations have to be designed to overcome mass transport limitations of this reaction.
We are going to design and assemble nanostructured hybrid materials to be simultaneously applied as both adsorber and cathode-material to photoelectrochemically convert CO2 to valuable liquid fuels. The three main goals of this project are to (i) gain fundamental understanding of morphological-, size-, and surface functional group effects on the photoelectrochemical (PEC) behavior at the nanoscale (ii) design and synthesize new functional hybrid materials for PEC CO2 reduction, (iii) develop flow-reactors for PEC CO2 reduction. Rationally designed hybrid nanostructures of large surface area p-type semiconductors (e.g., SiC, CuMO2, or CuPbI3) and N-containing conducting polymers (e.g., polyaniline-based custom designed polymers) will be responsible for: (i) higher photocurrents due to facile charge transfer and better light absorption (ii) higher selectivity towards the formation of liquid fuels due to the adsorption of CO2 on the photocathode (iii) better stability of the photocathode. The challenges are great, but the possible rewards are enormous: performing CO2 adsorption and reduction on the same system may lead to PEC cells which can be deployed directly at the source point of CO2, which would go well beyond the state-of-the-art.
Max ERC Funding
1 498 750 €
Duration
Start date: 2017-01-01, End date: 2021-12-31
Project acronym NBO
Project Novel Biomimetic Organocatalysts
Researcher (PI) Stephen Connon
Host Institution (HI) THE PROVOST, FELLOWS, FOUNDATION SCHOLARS & THE OTHER MEMBERS OF BOARD OF THE COLLEGE OF THE HOLY & UNDIVIDED TRINITY OF QUEEN ELIZABETH NEAR DUBLIN
Call Details Starting Grant (StG), PE4, ERC-2007-StG
Summary The primary aim of this project is to substantially expand the frontiers of current benchmark organocatalytic technology by the design, preparation and evaluation of the first class of thiol-based nucleophilic catalyst capable of emulating the action of NAD+-dependant enzymes such as aldehyde dehydrogenases, which promote the chemoselective oxidation/reduction of aldehyde substrates under mild conditions in aqueous media. The proposed artificial enzymes are designed biomimetically (in the true sense of the word) – only careful examination of the core enzyme competencies, modes-of-action and active sites has guided the design process. One of the key issues which this proposal addresses is the inherent difficulty associated with the design of artificial cofactor-dependent enzymes due to the requirement for a) efficient recognition by the catalyst of both the substrate and the cofactor, and b) the exertion of control over their encounter in the active site. We intend to tackle this challenge by covalently attaching groups functionally equivalent to the catalytically active residues of aldehyde dehydrogenases to a rigid NAD+ analogue in a manner which allows for their synergistic and biomimetic cooperation. Structure determination/mechanistic studies and the application of these new catalysts in a range of oxidations/reductions (we envisage that this project will result in the first organocatalyst able to demonstrably promote either - depending on the reaction conditions), (dynamic) kinetic resolutions, desymmetrisations, and ligations) will be undertaken and the development of catalytic processes for reactions currently outside the scope of any catalytic methodology is a clear long-term goal. We also wish to pursue the application of this potentially groundbreaking nucleophilic catalytic technology (for which no efficient organocatalysts have been thus far reported) toward the selective synthesis of enantiopure building blocks and pharmaceutically relevant molecules.
Summary
The primary aim of this project is to substantially expand the frontiers of current benchmark organocatalytic technology by the design, preparation and evaluation of the first class of thiol-based nucleophilic catalyst capable of emulating the action of NAD+-dependant enzymes such as aldehyde dehydrogenases, which promote the chemoselective oxidation/reduction of aldehyde substrates under mild conditions in aqueous media. The proposed artificial enzymes are designed biomimetically (in the true sense of the word) – only careful examination of the core enzyme competencies, modes-of-action and active sites has guided the design process. One of the key issues which this proposal addresses is the inherent difficulty associated with the design of artificial cofactor-dependent enzymes due to the requirement for a) efficient recognition by the catalyst of both the substrate and the cofactor, and b) the exertion of control over their encounter in the active site. We intend to tackle this challenge by covalently attaching groups functionally equivalent to the catalytically active residues of aldehyde dehydrogenases to a rigid NAD+ analogue in a manner which allows for their synergistic and biomimetic cooperation. Structure determination/mechanistic studies and the application of these new catalysts in a range of oxidations/reductions (we envisage that this project will result in the first organocatalyst able to demonstrably promote either - depending on the reaction conditions), (dynamic) kinetic resolutions, desymmetrisations, and ligations) will be undertaken and the development of catalytic processes for reactions currently outside the scope of any catalytic methodology is a clear long-term goal. We also wish to pursue the application of this potentially groundbreaking nucleophilic catalytic technology (for which no efficient organocatalysts have been thus far reported) toward the selective synthesis of enantiopure building blocks and pharmaceutically relevant molecules.
Max ERC Funding
1 249 772 €
Duration
Start date: 2008-10-01, End date: 2014-09-30
Project acronym SOFT-PHOTOCONVERSION
Project Solar Energy Conversion without Solid State Architectures: Pushing the Boundaries of Photoconversion Efficiencies at Self-healing Photosensitiser Functionalised Soft Interfaces
Researcher (PI) Micheal Diarmaid SCANLON
Host Institution (HI) UNIVERSITY OF LIMERICK
Call Details Starting Grant (StG), PE4, ERC-2016-STG
Summary Innovations in solar energy conversion are required to meet humanity’s growing energy demand, while reducing reliance on fossil fuels. All solar energy conversion devices harvest light and then separate photoproducts, minimising recombination. Normally charge separation takes place at the surface of nanostructured electrodes, often covered with photosensitiser molecules such as in dye-sensitised solar cells; DSSCs. However, the use solid state architectures made from inorganic materials leads to high processing costs, occasionally the use of toxic materials and an inability to generate a large and significant source of energy due to manufacturing limitations. An alternative is to effect charge separation at electrically polarised soft (immiscible water-oil) interfaces capable of driving charge transfer reactions and easily “dye-sensitised”. Photoproducts can be separated on either side of the soft interface based on their hydrophobicity or hydrophilicity, minimising recombination. SOFT-PHOTOCONVERSION will explore if photoconversion efficiencies at soft interfaces can be improved to become competitive with current photoelectrochemical systems, such as DSSCs. To achieve this goal innovative soft interface functionalisation strategies will be designed. To implement these strategies an integrated platform technology consisting of (photo)electrochemical, spectroscopic, microscopic and surface tension measurement techniques will be developed. This multi-disciplinary approach will allow precise monitoring of morphological changes in photoactive films that enhance activity in terms of optimal kinetics of photoinduced charge transfer. An unprecedented level of electrochemical control over photosensitiser assembly at soft interfaces will be attained, generating photoactive films with unique photophysical properties. Fundamental insights gained may potentially facilitate the emergence of new class of solar conversion devices non-reliant on solid state architectures.
Summary
Innovations in solar energy conversion are required to meet humanity’s growing energy demand, while reducing reliance on fossil fuels. All solar energy conversion devices harvest light and then separate photoproducts, minimising recombination. Normally charge separation takes place at the surface of nanostructured electrodes, often covered with photosensitiser molecules such as in dye-sensitised solar cells; DSSCs. However, the use solid state architectures made from inorganic materials leads to high processing costs, occasionally the use of toxic materials and an inability to generate a large and significant source of energy due to manufacturing limitations. An alternative is to effect charge separation at electrically polarised soft (immiscible water-oil) interfaces capable of driving charge transfer reactions and easily “dye-sensitised”. Photoproducts can be separated on either side of the soft interface based on their hydrophobicity or hydrophilicity, minimising recombination. SOFT-PHOTOCONVERSION will explore if photoconversion efficiencies at soft interfaces can be improved to become competitive with current photoelectrochemical systems, such as DSSCs. To achieve this goal innovative soft interface functionalisation strategies will be designed. To implement these strategies an integrated platform technology consisting of (photo)electrochemical, spectroscopic, microscopic and surface tension measurement techniques will be developed. This multi-disciplinary approach will allow precise monitoring of morphological changes in photoactive films that enhance activity in terms of optimal kinetics of photoinduced charge transfer. An unprecedented level of electrochemical control over photosensitiser assembly at soft interfaces will be attained, generating photoactive films with unique photophysical properties. Fundamental insights gained may potentially facilitate the emergence of new class of solar conversion devices non-reliant on solid state architectures.
Max ERC Funding
1 499 044 €
Duration
Start date: 2017-04-01, End date: 2022-03-31