ERC FUNDED PROJECTS

All levels of life entail cooperation and conflict. Genes cooperate to build up a functional genome, which can yet be undermined by selfish genetic elements. Humans and animals cooperate to build up societies, which can yet be subverted by cheats. There is a long-standing interest among biologists to comprehend the tug-of-war between cooperation and conflict. Recently, research on bacteria was successful in identifying key factors that can tip the balance in favour or against cooperation. Bacteria cooperate through the formation of protective biofilms, cell-to-cell communication, and the secretion of shareable public goods. However, the advantage of bacteria being fast replicating units, easily cultivatable in high numbers, is also their disadvantage: they are small and imperceptible, such that measures of cooperation typically rely on averaged responses across millions of cells. Thus, we still know very little about bacterial cooperation at the biological relevant scale: the individual cell level. Here, I present research using the secretion of public goods in the opportunistic human pathogen Pseudomonas aeruginosa, to tackle this issue. I will explore new dimensions of bacterial cooperation by asking whether bacteria engage in collective-decision making to find optimal group-level solutions; whether bacteria show division of labour to split up work efficiently; and whether bacteria can distinguish between trustworthy and cheating partners. The proposed research will make two significant contributions. First, it will reveal whether bacteria engage in complex forms of cooperation (collective decision-making, division of labour, partner recognition), which have traditionally been associated with higher organisms. Second, it will provide insights into the evolutionary stability of cooperation – key knowledge for designing therapies that interfere with virulence-inducing public goods in infections, and the design of stable public-good based remediation processes.

1 994 981 €

Start date: 2016-09-01, End date: 2021-08-31

"Amines and their acylated derivatives – amides – are among the most common chemical functional groups found in modern pharmaceuticals. Despite this there are few methods for their efficient, environmentally sustainable production in enantiomerically pure form. This proposal seeks to provide new catalytic chemical methods including 1) the catalytic, enantioselective synthesis of peptides and 2) catalytic methods for the preparation of enantiopure nitrogen-containing heterocycles. The proposed work features innovative chemistry including novel reaction mechanism and catalysts. These methods have far reaching applications for the sustainable production of valuable compounds as well as fundamental science."

1 500 000 €

Start date: 2012-12-01, End date: 2017-11-30

Nonlinear optics is present in our daily life with applications, e.g. light sources for microsurgery or green laser pointer. All of them use bulk materials such as glass fibers or crystals. Generating nonlinear effects from materials at the nanoscale would expand the applications to biology as imaging markers or optoelectronic integrated devices. However, nonlinear signals scale with the volume of a material. Therefore finding materials with high nonlinearities to avoid using high power and large interaction length is challenging. Many studies focus on third order nonlinearities (described by a χ(3) tensor) present in every material (silicon, graphene…) or on metals for enhancing nonlinearities with plasmonics. My approach is to explore second-order χ(2) nanomaterials, since they show higher nonlinearities than χ(3) ones, additional properties such as birefringence, wide band gap for transparency, high refractive index (n>2), and no ohmic losses. Typical χ(2) materials are oxides (BaTiO3, LiNbO3…) with a non-centrosymmetric crystal used for wavelength conversion like in second-harmonic generation (SHG). The key idea is to demonstrate original strategies to enhance SHG of χ(2) nano-oxides with the material itself and without involving any hybrid effects from other materials such as plasmonic resonances of metals. First, I propose to use multiple Mie resonances from BaTiO3 nanoparticles to boost SHG in the UV to NIR range. Up to now, Mie effects at the nanoscale have been measured in materials with no χ(2) nonlinearities (silicon spheres). Second, since χ(2) oxides are difficult to etch, I will overcome this fabrication issue by demonstrating solution processed imprint lithography to form high-quality photonic crystal cavities from nanoparticles. Third, I will use facet processing of single LiNbO3 nanowire to obtain directionality effects for spectroscopy on-a-chip. This work fosters applications and commercial devices offering a sustainable future to this field.

1 500 000 €

Start date: 2017-02-01, End date: 2022-01-31

"More than 150 years after the publication of Charles Darwin’s The Origin of Species, the identification of the processes that govern the emergence of novel species remains a fundamental problem to biology. Why is it that some groups have diversified in a seemingly explosive manner, while others have lingered unvaried over millions of years? What are the external factors and environmental conditions that promote organismal diversity? And what is the molecular basis of adaptation and diversification? A key to these and related questions is the comparative study of exceptionally diverse yet relatively recent species assemblages such as Darwin’s finches, the Caribbean anole lizards, or the hundreds of endemic species of cichlid fishes in the East African Great Lakes, which are at the center of this proposal. More specifically, I intend to conduct the so far most thorough examination of a large adaptive radiation, combining in-depth eco-morphological assessments and whole genome sequencing of all members of a cichlid species flock. To this end, I plan to (i) sequence the genomes and transcriptomes of several specimens of each cichlid species from Lake Tanganyika to examine genetic and transcriptional diversity; (ii) apply stable-isotope and stomach-content analyses in combination with underwater transplant experiments and transect surveys to quantitate feeding performances, habitat preferences and natural-history parameters; (iii) use X-ray computed tomography to study phenotypic variation in 3D; and (iv) examine fossils from existing and forthcoming drilling cores to implement a time line of diversification in a cichlid adaptive radiation. This project, thus, offers the unique opportunity to test recent theory- and data-based predictions on speciation and adaptive radiation within an entire biological system – in this case the adaptive radiation of cichlid fishes in Lake Tanganyika."

1 999 238 €

Start date: 2014-03-01, End date: 2019-02-28