Project acronym ACCOPT
Project ACelerated COnvex OPTimization
Researcher (PI) Yurii NESTEROV
Host Institution (HI) UNIVERSITE CATHOLIQUE DE LOUVAIN
Call Details Advanced Grant (AdG), PE1, ERC-2017-ADG
Summary The amazing rate of progress in the computer technologies and telecommunications presents many new challenges for Optimization Theory. New problems are usually very big in size, very special in structure and possibly have a distributed data support. This makes them unsolvable by the standard optimization methods. In these situations, old theoretical models, based on the hidden Black-Box information, cannot work. New theoretical and algorithmic solutions are urgently needed. In this project we will concentrate on development of fast optimization methods for problems of big and very big size. All the new methods will be endowed with provable efficiency guarantees for large classes of optimization problems, arising in practical applications. Our main tool is the acceleration technique developed for the standard Black-Box methods as applied to smooth convex functions. However, we will have to adapt it to deal with different situations.
The first line of development will be based on the smoothing technique as applied to a non-smooth functions. We propose to substantially extend this approach to generate approximate solutions in relative scale. The second line of research will be related to applying acceleration techniques to the second-order methods minimizing functions with sparse Hessians. Finally, we aim to develop fast gradient methods for huge-scale problems. The size of these problems is so big that even the usual vector operations are extremely expensive. Thus, we propose to develop new methods with sublinear iteration costs. In our approach, the main source for achieving improvements will be the proper use of problem structure.
Our overall aim is to be able to solve in a routine way many important problems, which currently look unsolvable. Moreover, the theoretical development of Convex Optimization will reach the state, when there is no gap between theory and practice: the theoretically most efficient methods will definitely outperform any homebred heuristics.
Summary
The amazing rate of progress in the computer technologies and telecommunications presents many new challenges for Optimization Theory. New problems are usually very big in size, very special in structure and possibly have a distributed data support. This makes them unsolvable by the standard optimization methods. In these situations, old theoretical models, based on the hidden Black-Box information, cannot work. New theoretical and algorithmic solutions are urgently needed. In this project we will concentrate on development of fast optimization methods for problems of big and very big size. All the new methods will be endowed with provable efficiency guarantees for large classes of optimization problems, arising in practical applications. Our main tool is the acceleration technique developed for the standard Black-Box methods as applied to smooth convex functions. However, we will have to adapt it to deal with different situations.
The first line of development will be based on the smoothing technique as applied to a non-smooth functions. We propose to substantially extend this approach to generate approximate solutions in relative scale. The second line of research will be related to applying acceleration techniques to the second-order methods minimizing functions with sparse Hessians. Finally, we aim to develop fast gradient methods for huge-scale problems. The size of these problems is so big that even the usual vector operations are extremely expensive. Thus, we propose to develop new methods with sublinear iteration costs. In our approach, the main source for achieving improvements will be the proper use of problem structure.
Our overall aim is to be able to solve in a routine way many important problems, which currently look unsolvable. Moreover, the theoretical development of Convex Optimization will reach the state, when there is no gap between theory and practice: the theoretically most efficient methods will definitely outperform any homebred heuristics.
Max ERC Funding
2 090 038 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym CALCULUS
Project Commonsense and Anticipation enriched Learning of Continuous representations sUpporting Language UnderStanding
Researcher (PI) Marie-Francine MOENS
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Call Details Advanced Grant (AdG), PE6, ERC-2017-ADG
Summary Natural language understanding (NLU) by the machine is of large scientific, economic and social value. Humans perform the NLU task in an efficient way by relying on their capability to imagine or anticipate situations. They engage commonsense and world knowledge that is often acquired through perceptual experiences to make explicit what is left implicit in language. Inspired by these characteristics CALCULUS will design, implement and evaluate innovative paradigms supporting NLU, where it will combine old but powerful ideas for language understanding from the early days of artificial intelligence with new approaches from machine learning. The project focuses on the effective learning of anticipatory, continuous, non-symbolic representations of event frames and narrative structures of events that are trained on language and visual data. The grammatical structure of language is grounded in the geometric structure of visual data while embodying aspects of commonsense and world knowledge. The reusable representations are evaluated in a selection of NLU tasks requiring efficient real-time retrieval of the representations and parsing of the targeted written texts. Finally, we will evaluate the inference potential of the anticipatory representations in situations not seen in the training data and when inferring spatial and temporal information in metric real world spaces that is not mentioned in the processed language. The machine learning methods focus on learning latent variable models relying on Bayesian probabilistic models and neural networks and focus on settings with limited training data that are manually annotated. The best models will be integrated in a demonstrator that translates the language of stories to events happening in a 3-D virtual world. The PI has interdisciplinary expertise in natural language processing, joint processing of language and visual data, information retrieval and machine learning needed for the successful realization of the project.
Summary
Natural language understanding (NLU) by the machine is of large scientific, economic and social value. Humans perform the NLU task in an efficient way by relying on their capability to imagine or anticipate situations. They engage commonsense and world knowledge that is often acquired through perceptual experiences to make explicit what is left implicit in language. Inspired by these characteristics CALCULUS will design, implement and evaluate innovative paradigms supporting NLU, where it will combine old but powerful ideas for language understanding from the early days of artificial intelligence with new approaches from machine learning. The project focuses on the effective learning of anticipatory, continuous, non-symbolic representations of event frames and narrative structures of events that are trained on language and visual data. The grammatical structure of language is grounded in the geometric structure of visual data while embodying aspects of commonsense and world knowledge. The reusable representations are evaluated in a selection of NLU tasks requiring efficient real-time retrieval of the representations and parsing of the targeted written texts. Finally, we will evaluate the inference potential of the anticipatory representations in situations not seen in the training data and when inferring spatial and temporal information in metric real world spaces that is not mentioned in the processed language. The machine learning methods focus on learning latent variable models relying on Bayesian probabilistic models and neural networks and focus on settings with limited training data that are manually annotated. The best models will be integrated in a demonstrator that translates the language of stories to events happening in a 3-D virtual world. The PI has interdisciplinary expertise in natural language processing, joint processing of language and visual data, information retrieval and machine learning needed for the successful realization of the project.
Max ERC Funding
2 227 500 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym DISPATCH Neuro-Sense
Project Distributed Signal Processing Algorithms for Chronic Neuro-Sensor Networks
Researcher (PI) Alexander BERTRAND
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Call Details Starting Grant (StG), PE6, ERC-2018-STG
Summary The possibility to chronically monitor the brain 24/7 in daily-life activities would revolutionize human-machine interactions and health care, e.g., in the context of neuroprostheses, neurological disorders, and brain-computer interfaces (BCI). Such chronic systems must satisfy challenging energy and miniaturization constraints, leading to modular designs in which multiple networked miniature neuro-sensor modules form a ‘neuro-sensor network’ (NSN).
However, current multi-channel neural signal processing (NSP) algorithms were designed for traditional neuro-sensor arrays with central access to all channels. These algorithms are not suited for NSNs, as they require unrealistic bandwidth budgets to centralize the data, yet a joint neural data analysis across NSN modules is crucial.
The central idea of this project is to remove this algorithm bottleneck by designing novel scalable, distributed NSP algorithms to let the modules of an NSN jointly process the recorded neural data through in-network data fusion and with a minimal exchange of data.
To guarantee impact, we mainly focus on establishing a new non-invasive NSN concept based on electroencephalography (EEG). By combining multiple ‘smart’ mini-EEG modules into an ‘EEG sensor network’ (EEG-Net), we compensate for the lack of spatial information captured by current stand-alone mini-EEG devices, without compromising in ‘wearability’. Equipping such EEG-Nets with distributed NSP algorithms will allow to process high-density EEG data at viable energy levels, which is a game changer towards high-performance chronic EEG for, e.g., epilepsy monitoring, neuroprostheses, and BCI.
We will validate these claims in an EEG-Net prototype in the above 3 use cases, benefiting from ongoing collaborations with the KUL university hospital. In addition, to demonstrate the general applicability of our novel NSP algorithms, we will validate them in other emerging NSN types as well, such as modular or untethered neural probes.
Summary
The possibility to chronically monitor the brain 24/7 in daily-life activities would revolutionize human-machine interactions and health care, e.g., in the context of neuroprostheses, neurological disorders, and brain-computer interfaces (BCI). Such chronic systems must satisfy challenging energy and miniaturization constraints, leading to modular designs in which multiple networked miniature neuro-sensor modules form a ‘neuro-sensor network’ (NSN).
However, current multi-channel neural signal processing (NSP) algorithms were designed for traditional neuro-sensor arrays with central access to all channels. These algorithms are not suited for NSNs, as they require unrealistic bandwidth budgets to centralize the data, yet a joint neural data analysis across NSN modules is crucial.
The central idea of this project is to remove this algorithm bottleneck by designing novel scalable, distributed NSP algorithms to let the modules of an NSN jointly process the recorded neural data through in-network data fusion and with a minimal exchange of data.
To guarantee impact, we mainly focus on establishing a new non-invasive NSN concept based on electroencephalography (EEG). By combining multiple ‘smart’ mini-EEG modules into an ‘EEG sensor network’ (EEG-Net), we compensate for the lack of spatial information captured by current stand-alone mini-EEG devices, without compromising in ‘wearability’. Equipping such EEG-Nets with distributed NSP algorithms will allow to process high-density EEG data at viable energy levels, which is a game changer towards high-performance chronic EEG for, e.g., epilepsy monitoring, neuroprostheses, and BCI.
We will validate these claims in an EEG-Net prototype in the above 3 use cases, benefiting from ongoing collaborations with the KUL university hospital. In addition, to demonstrate the general applicability of our novel NSP algorithms, we will validate them in other emerging NSN types as well, such as modular or untethered neural probes.
Max ERC Funding
1 489 656 €
Duration
Start date: 2019-01-01, End date: 2023-12-31
Project acronym FHiCuNCAG
Project Foundations for Higher and Curved Noncommutative Algebraic Geometry
Researcher (PI) Wendy Joy Lowen
Host Institution (HI) UNIVERSITEIT ANTWERPEN
Call Details Consolidator Grant (CoG), PE1, ERC-2018-COG
Summary With this research programme, inspired by open problems within noncommutative algebraic geometry (NCAG) as well as by actual developments in algebraic topology, it is our aim to lay out new foundations for NCAG. On the one hand, the categorical approach to geometry put forth in NCAG has seen a wide range of applications both in mathematics and in theoretical physics. On the other hand, algebraic topology has received a vast impetus from the development of higher topos theory by Lurie and others. The current project is aimed at cross-fertilisation between the two subjects, in particular through the development of “higher linear topos theory”. We will approach the higher structure on Hochschild type complexes from two angles. Firstly, focusing on intrinsic incarnations of spaces as large categories, we will use the tensor products developed jointly with Ramos González and Shoikhet to obtain a “large version” of the Deligne conjecture. Secondly, focusing on concrete representations, we will develop new operadic techniques in order to endow complexes like the Gerstenhaber-Schack complex for prestacks (due to Dinh Van-Lowen) and the deformation complexes for monoidal categories and pasting diagrams (due to Shrestha and Yetter) with new combinatorial structure. In another direction, we will move from Hochschild cohomology of abelian categories (in the sense of Lowen-Van den Bergh) to Mac Lane cohomology for exact categories (in the sense of Kaledin-Lowen), extending the scope of NCAG to “non-linear deformations”. One of the mysteries in algebraic deformation theory is the curvature problem: in the process of deformation we are brought to the boundaries of NCAG territory through the introduction of a curvature component which disables the standard approaches to cohomology. Eventually, it is our goal to set up a new framework for NCAG which incorporates curved objects, drawing inspiration from the realm of higher categories.
Summary
With this research programme, inspired by open problems within noncommutative algebraic geometry (NCAG) as well as by actual developments in algebraic topology, it is our aim to lay out new foundations for NCAG. On the one hand, the categorical approach to geometry put forth in NCAG has seen a wide range of applications both in mathematics and in theoretical physics. On the other hand, algebraic topology has received a vast impetus from the development of higher topos theory by Lurie and others. The current project is aimed at cross-fertilisation between the two subjects, in particular through the development of “higher linear topos theory”. We will approach the higher structure on Hochschild type complexes from two angles. Firstly, focusing on intrinsic incarnations of spaces as large categories, we will use the tensor products developed jointly with Ramos González and Shoikhet to obtain a “large version” of the Deligne conjecture. Secondly, focusing on concrete representations, we will develop new operadic techniques in order to endow complexes like the Gerstenhaber-Schack complex for prestacks (due to Dinh Van-Lowen) and the deformation complexes for monoidal categories and pasting diagrams (due to Shrestha and Yetter) with new combinatorial structure. In another direction, we will move from Hochschild cohomology of abelian categories (in the sense of Lowen-Van den Bergh) to Mac Lane cohomology for exact categories (in the sense of Kaledin-Lowen), extending the scope of NCAG to “non-linear deformations”. One of the mysteries in algebraic deformation theory is the curvature problem: in the process of deformation we are brought to the boundaries of NCAG territory through the introduction of a curvature component which disables the standard approaches to cohomology. Eventually, it is our goal to set up a new framework for NCAG which incorporates curved objects, drawing inspiration from the realm of higher categories.
Max ERC Funding
1 171 360 €
Duration
Start date: 2019-06-01, End date: 2024-05-31
Project acronym FitteR-CATABOLIC
Project Survival of the Fittest: On how to enhance recovery from critical illness through learning from evolutionary conserved catabolic pathways
Researcher (PI) Greta Herman VAN DEN BERGHE
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Call Details Advanced Grant (AdG), LS7, ERC-2017-ADG
Summary Since a few decades, human patients who suffer from severe illnesses or multiple trauma, conditions that were previously lethal, are being treated in intensive care units (ICUs). Modern intensive care medicine bridges patients from life-threatening conditions to recovery with use of mechanical devices, vasoactive drugs and powerful anti-microbial agents. By postponing death, a new unnatural condition, intensive-care-dependent prolonged (>1 week) critical illness, has been created. About 25% of ICU patients today require prolonged intensive care, sometimes for weeks or months, and these patients are at high risk of death while consuming 75% of resources. Although the primary insult was adequately dealt with, many long-stay patients typically suffer from hypercatabolism, ICU-acquired brain dysfunction and polyneuropathy/myopathy leading to severe muscle weakness, further increasing the risk of late death. As hypercatabolism was considered the culprit, several anabolic interventions were tested, but these showed harm instead of benefit. We previously showed that fasting early during illness is superior to forceful feeding, pointing to certain benefits of catabolic responses. In healthy humans, fasting activates catabolism to provide substrates essential to protect and maintain brain and muscle function. This proposal aims to investigate whether evolutionary conserved catabolic fasting pathways, specifically lipolysis and ketogenesis, can be exploited in the search for prevention of brain dysfunction and muscle weakness in long-stay ICU patients, with the goal to identify a new metabolic intervention to enhance their recovery. The project builds further on our experience with bi-directional translational research - using human material whenever possible and a validated mouse model of sepsis-induced critical illness for objectives that cannot be addressed in patients - and aims to close the loop, from a novel concept to a large randomized controlled trial in patients.
Summary
Since a few decades, human patients who suffer from severe illnesses or multiple trauma, conditions that were previously lethal, are being treated in intensive care units (ICUs). Modern intensive care medicine bridges patients from life-threatening conditions to recovery with use of mechanical devices, vasoactive drugs and powerful anti-microbial agents. By postponing death, a new unnatural condition, intensive-care-dependent prolonged (>1 week) critical illness, has been created. About 25% of ICU patients today require prolonged intensive care, sometimes for weeks or months, and these patients are at high risk of death while consuming 75% of resources. Although the primary insult was adequately dealt with, many long-stay patients typically suffer from hypercatabolism, ICU-acquired brain dysfunction and polyneuropathy/myopathy leading to severe muscle weakness, further increasing the risk of late death. As hypercatabolism was considered the culprit, several anabolic interventions were tested, but these showed harm instead of benefit. We previously showed that fasting early during illness is superior to forceful feeding, pointing to certain benefits of catabolic responses. In healthy humans, fasting activates catabolism to provide substrates essential to protect and maintain brain and muscle function. This proposal aims to investigate whether evolutionary conserved catabolic fasting pathways, specifically lipolysis and ketogenesis, can be exploited in the search for prevention of brain dysfunction and muscle weakness in long-stay ICU patients, with the goal to identify a new metabolic intervention to enhance their recovery. The project builds further on our experience with bi-directional translational research - using human material whenever possible and a validated mouse model of sepsis-induced critical illness for objectives that cannot be addressed in patients - and aims to close the loop, from a novel concept to a large randomized controlled trial in patients.
Max ERC Funding
2 500 000 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym ImmunoBioSynth
Project Synergistic engineering of anti-tumor immunity by synthetic biomaterials
Researcher (PI) Bruno DE GEEST
Host Institution (HI) UNIVERSITEIT GENT
Call Details Consolidator Grant (CoG), LS7, ERC-2018-COG
Summary Immunotherapy holds the potential to dramatically improve the curative prognosis of cancer patients. However, despite significant progress, a huge gap remains to be bridged to gain board success in the clinic. A first limiting factor in cancer immunotherapy is the low response rate in large fraction of the patients and an unmet need exists for more efficient - potentially synergistic - immunotherapies that improve upon or complement existing strategies. The second limiting factor is immune-related toxicity that can cause live-threatening situations as well as seriously impair the quality of life of patients. Therefore, there is an urgent need for safer immunotherapies that allow for a more target-specific engineering of the immune system. Strategies to engineer the immune system via a materials chemistry approach, i.e. immuno-engineering, have gathered major attention over the past decade and could complement or replace biologicals, and holds promise to contribute to resolving the current issues faced by the immunotherapy field. I hypothesize that synthetic biomaterials can play an important role in anti-cancer immunotherapy with regard to synergistic, safe, but potent, instruction of innate and adaptive anti-cancer immunity and to revert the tumor microenvironment from an immune-suppressive into an immune-susceptible state. Hereto, the overall scientific objective of this proposal is to fully embrace the potential of immuno-engineering and develop several highly synergistic biomaterials strategies to engineer the immune system to fight cancer. I will develop a series of biomaterials and address a number of fundamental questions with regard to optimal biomaterial design for immuno-engineering. Based on these findings, I will elucidate those therapeutic strategies that lead to synergistic engineering of innate and adaptive immunity in combination with remodeling the tumor microenvironment from an immune-suppressive into an immune-susceptible state.
Summary
Immunotherapy holds the potential to dramatically improve the curative prognosis of cancer patients. However, despite significant progress, a huge gap remains to be bridged to gain board success in the clinic. A first limiting factor in cancer immunotherapy is the low response rate in large fraction of the patients and an unmet need exists for more efficient - potentially synergistic - immunotherapies that improve upon or complement existing strategies. The second limiting factor is immune-related toxicity that can cause live-threatening situations as well as seriously impair the quality of life of patients. Therefore, there is an urgent need for safer immunotherapies that allow for a more target-specific engineering of the immune system. Strategies to engineer the immune system via a materials chemistry approach, i.e. immuno-engineering, have gathered major attention over the past decade and could complement or replace biologicals, and holds promise to contribute to resolving the current issues faced by the immunotherapy field. I hypothesize that synthetic biomaterials can play an important role in anti-cancer immunotherapy with regard to synergistic, safe, but potent, instruction of innate and adaptive anti-cancer immunity and to revert the tumor microenvironment from an immune-suppressive into an immune-susceptible state. Hereto, the overall scientific objective of this proposal is to fully embrace the potential of immuno-engineering and develop several highly synergistic biomaterials strategies to engineer the immune system to fight cancer. I will develop a series of biomaterials and address a number of fundamental questions with regard to optimal biomaterial design for immuno-engineering. Based on these findings, I will elucidate those therapeutic strategies that lead to synergistic engineering of innate and adaptive immunity in combination with remodeling the tumor microenvironment from an immune-suppressive into an immune-susceptible state.
Max ERC Funding
2 000 000 €
Duration
Start date: 2019-04-01, End date: 2024-03-31
Project acronym METAPTPs
Project PROTEIN TYROSINE PHOSPHATASES IN METABOLIC DISEASES: OXIDATION, DYSFUNCTION AND THERAPEUTIC POTENTIAL
Researcher (PI) Esteban GURZOV AMARELO
Host Institution (HI) UNIVERSITE LIBRE DE BRUXELLES
Call Details Consolidator Grant (CoG), LS7, ERC-2018-COG
Summary Diabetes mellitus is characterised by hyperglycaemia caused by an absolute or relative insulin deficiency. The global prevalence of diabetes has reached more than 410 million individuals, underscoring the need for novel therapeutic strategies targeting the pathology as a multi-organ disease. Protein tyrosine phosphatases (PTPs) constitute a superfamily of enzymes that dephosphorylate tyrosine-phosphorylated proteins and oppose the actions of protein tyrosine kinases. My previous studies and preliminary data suggest that PTPs act as molecular switches for key signalling events in the development of diabetes, i.e. insulin/glucose/cytokine signalling. Dysregulation of these pathways results in metabolic consequences that are cell-specific. Oxidative stress abrogates the nucleophilic properties of the PTP active site and induces conformational changes that inhibit PTP activity and prevent substrate-binding. I have recently developed an innovative proteomic approach to quantify PTP oxidation in vivo and demonstrated that this occurs in liver/pancreas under pathological conditions, including obesity and inflammation. In this proposal, I aim to fully characterise the activity and oxidation status of PTPs in dysfunctional metabolic relevant cells in obesity and diabetes. Importantly, the crucial role of PTPs make them promising candidates for the treatment of metabolic disorders. I hypothesise that specific antioxidants, diets and/or adenovirus will restore PTP function and ameliorate the metabolic deleterious defects in pre-clinical studies. Over the next 5 years, I aim to:
• Identify the major oxidised PTPs in metabolic relevant tissues/cells in both obesity and diabetes.
• Determine the contribution of PTP inactivation in cellular responses to metabolic signalling in human samples.
• Assess the impact of tissue-specific PTP deficiency on the development of obesity and diabetes.
• Test novel therapeutic approaches targeting PTPs to prevent/reverse metabolic disorders.
Summary
Diabetes mellitus is characterised by hyperglycaemia caused by an absolute or relative insulin deficiency. The global prevalence of diabetes has reached more than 410 million individuals, underscoring the need for novel therapeutic strategies targeting the pathology as a multi-organ disease. Protein tyrosine phosphatases (PTPs) constitute a superfamily of enzymes that dephosphorylate tyrosine-phosphorylated proteins and oppose the actions of protein tyrosine kinases. My previous studies and preliminary data suggest that PTPs act as molecular switches for key signalling events in the development of diabetes, i.e. insulin/glucose/cytokine signalling. Dysregulation of these pathways results in metabolic consequences that are cell-specific. Oxidative stress abrogates the nucleophilic properties of the PTP active site and induces conformational changes that inhibit PTP activity and prevent substrate-binding. I have recently developed an innovative proteomic approach to quantify PTP oxidation in vivo and demonstrated that this occurs in liver/pancreas under pathological conditions, including obesity and inflammation. In this proposal, I aim to fully characterise the activity and oxidation status of PTPs in dysfunctional metabolic relevant cells in obesity and diabetes. Importantly, the crucial role of PTPs make them promising candidates for the treatment of metabolic disorders. I hypothesise that specific antioxidants, diets and/or adenovirus will restore PTP function and ameliorate the metabolic deleterious defects in pre-clinical studies. Over the next 5 years, I aim to:
• Identify the major oxidised PTPs in metabolic relevant tissues/cells in both obesity and diabetes.
• Determine the contribution of PTP inactivation in cellular responses to metabolic signalling in human samples.
• Assess the impact of tissue-specific PTP deficiency on the development of obesity and diabetes.
• Test novel therapeutic approaches targeting PTPs to prevent/reverse metabolic disorders.
Max ERC Funding
1 966 906 €
Duration
Start date: 2019-04-01, End date: 2024-03-31
Project acronym NANONC
Project Nanomaterials in Oncology: Exploiting the Intrinsic Cancer-Specific Toxicity of Nanoparticles.
Researcher (PI) Stefaan SOENEN
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Call Details Starting Grant (StG), LS7, ERC-2017-STG
Summary In our current society, therapeutic strategies against cancer suffer from dose-limiting toxicity, lack of specificity and high morbidity. To overcome this, the use of nanomaterials (NMs) is rising, where several NM formulations are undergoing clinical trials or are used in clinics where the NMs are used as drug delivery vehicles or as mediators in physical anticancer methods (e.g. hyperthermia), where to date, the success rate is limited due to low tumor targeting efficacy, lack of specificity and frequent re-use of classical toxicity mechanisms.
To overcome these issues, this research program aims to exploit the intrinsic toxicity of certain types of metal-based, degradation-prone NMs (Fe-doped ZnO, Fe-doped CuO and Ag of different sizes and coatings) towards only cancer cells as a novel and generic anti-cancer tool with 1) improved efficacy against difficult to treat cancers such as multidrug-resistant cancer cells, 2) enhanced specificity and selectivity of the treatment by the intrinsic cancer cell-specific toxicity of NMs towards cancer cells. To overcome the issues related to selective delivery of the NMs, tumor-homing cells will be used that have been shown to efficiently home to primary tumors and their metastases. In practice, the NMs used show distinct degradation kinetics that primarily induce cancer-selective toxicity. To obtain efficient tumor targeting, suicide gene-expressing tumor-homing cells will be loaded with the NMs in their cytoplasm, hereby impeding premature NM degradation. The tumor homing efficacy of these cells will be monitored via optical imaging and once at the target site these cells will be chemically destroyed using the suicide gene strategy. This will release the NMs into the tumor site, where they can selectively destroy the cancer cells. This research program will be the first to explore the full potential of cancer-specific toxicity of NMs and the use of cytoplasmic loading of cells as biological carriers for efficient delivery.
Summary
In our current society, therapeutic strategies against cancer suffer from dose-limiting toxicity, lack of specificity and high morbidity. To overcome this, the use of nanomaterials (NMs) is rising, where several NM formulations are undergoing clinical trials or are used in clinics where the NMs are used as drug delivery vehicles or as mediators in physical anticancer methods (e.g. hyperthermia), where to date, the success rate is limited due to low tumor targeting efficacy, lack of specificity and frequent re-use of classical toxicity mechanisms.
To overcome these issues, this research program aims to exploit the intrinsic toxicity of certain types of metal-based, degradation-prone NMs (Fe-doped ZnO, Fe-doped CuO and Ag of different sizes and coatings) towards only cancer cells as a novel and generic anti-cancer tool with 1) improved efficacy against difficult to treat cancers such as multidrug-resistant cancer cells, 2) enhanced specificity and selectivity of the treatment by the intrinsic cancer cell-specific toxicity of NMs towards cancer cells. To overcome the issues related to selective delivery of the NMs, tumor-homing cells will be used that have been shown to efficiently home to primary tumors and their metastases. In practice, the NMs used show distinct degradation kinetics that primarily induce cancer-selective toxicity. To obtain efficient tumor targeting, suicide gene-expressing tumor-homing cells will be loaded with the NMs in their cytoplasm, hereby impeding premature NM degradation. The tumor homing efficacy of these cells will be monitored via optical imaging and once at the target site these cells will be chemically destroyed using the suicide gene strategy. This will release the NMs into the tumor site, where they can selectively destroy the cancer cells. This research program will be the first to explore the full potential of cancer-specific toxicity of NMs and the use of cytoplasmic loading of cells as biological carriers for efficient delivery.
Max ERC Funding
1 947 519 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym NEUMACS
Project Neuron-associated macrophages in the gut as novel target for the treatment of enteric neuropathies
Researcher (PI) Guy BOECKXSTAENS
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Call Details Advanced Grant (AdG), LS7, ERC-2018-ADG
Summary The gastrointestinal tract has the vital task to digest and absorb ingested food, a complex process requiring coordinated integration of motility, secretion, vascularization and absorption. Thereto the gastrointestinal tract is equipped with its own nervous system, the enteric nervous system (ENS), capable of controlling gut function independently of input from brain or spinal cord. Reduction in number or dysfunction of the neurons within the gut wall, also referred to as enteric neuropathy, significantly impacts on gut function, resulting in stasis of luminal contents and malabsorption, chronic pain, vomiting, bloating and severe constipation. Enteric neuropathies are common in prevalent disorders such as obesity, diabetes, and ageing, all major contributors to the health burden. Despite the continuous global increase in incidence of these disorders, the insight in the mechanisms leading to the reduction or dysfunction of enteric neurons is limited and most importantly, adequate treatment is lacking. Recently, we collected evidence that survival of enteric neurons is guaranteed by a unique subpopulation of resident macrophages closely associated to the ENS and expressing a typical neuroprotective / -supportive transcriptome. In line, depletion of these neuron-associated macrophages (NA-MF) results in apoptosis and a reduction in number of enteric neurons leading to severely impaired gastrointestinal motility. We pose the provocative hypothesis that enteric neuropathy results from impaired support to the ENS by NA-MF, leading to neural distress and apoptosis. Using state-of-the-art methods, we will first characterize in depth the NA-MF population to subsequently unravel the mechanisms leading to failure of NA-MF to support and protect the ENS in animal models and in patients. These ground-breaking insights will allow us to identify therapeutic targets for the treatment of enteric neuropathies, representing an exponentially growing health problem of the 21st century.
Summary
The gastrointestinal tract has the vital task to digest and absorb ingested food, a complex process requiring coordinated integration of motility, secretion, vascularization and absorption. Thereto the gastrointestinal tract is equipped with its own nervous system, the enteric nervous system (ENS), capable of controlling gut function independently of input from brain or spinal cord. Reduction in number or dysfunction of the neurons within the gut wall, also referred to as enteric neuropathy, significantly impacts on gut function, resulting in stasis of luminal contents and malabsorption, chronic pain, vomiting, bloating and severe constipation. Enteric neuropathies are common in prevalent disorders such as obesity, diabetes, and ageing, all major contributors to the health burden. Despite the continuous global increase in incidence of these disorders, the insight in the mechanisms leading to the reduction or dysfunction of enteric neurons is limited and most importantly, adequate treatment is lacking. Recently, we collected evidence that survival of enteric neurons is guaranteed by a unique subpopulation of resident macrophages closely associated to the ENS and expressing a typical neuroprotective / -supportive transcriptome. In line, depletion of these neuron-associated macrophages (NA-MF) results in apoptosis and a reduction in number of enteric neurons leading to severely impaired gastrointestinal motility. We pose the provocative hypothesis that enteric neuropathy results from impaired support to the ENS by NA-MF, leading to neural distress and apoptosis. Using state-of-the-art methods, we will first characterize in depth the NA-MF population to subsequently unravel the mechanisms leading to failure of NA-MF to support and protect the ENS in animal models and in patients. These ground-breaking insights will allow us to identify therapeutic targets for the treatment of enteric neuropathies, representing an exponentially growing health problem of the 21st century.
Max ERC Funding
2 500 000 €
Duration
Start date: 2019-10-01, End date: 2024-09-30
Project acronym ORGANITRA
Project Transport of phosphorylated compounds across lipid bilayers by supramolecular receptors
Researcher (PI) Elisabeth VAN DIJK
Host Institution (HI) UNIVERSITE LIBRE DE BRUXELLES
Call Details Starting Grant (StG), PE5, ERC-2018-STG
Summary This ORGANITRA project addresses transmembrane transport. Lipid bilayer membranes not only define the borders of cells and their compartments but are also implicated in metabolic processes and signal transduction. Membranes function as impermeable barriers for ionic and hydrophilic species which can only cross the membrane with the aid of dedicated membrane proteins.
For biotechnological and biophysical applications, the development of anion carriers that can bind an anion and transport it across the lipid bilayer could be of great relevance. In this project, synthetic anion receptors will be developed to bind biologically relevant organic phosphorylated compounds, like nucleotides. These receptors will then be used to transport these organophosphates across membranes.
The receptors will be synthesised by dynamic combinatorial chemistry. Building blocks containing urea or thiourea groups, for efficient phosphate binding, will be connected to multi-armed scaffolds by hydrazone groups. The dynamic character of these bonds will be used to identify efficient receptors from libraries of compounds, using different phosphorylated compounds as templates. With this approach, selective receptors for different nucleotides and related compounds can be obtained.
The transport performance of the receptors will be evaluated with newly developed assays. Liposomes will be used as model systems and transport will be monitored by fluorescence spectroscopy using the quenching of the emission of an encapsulated phosphate sensitive dye. Additionally, the mechanism of the transport processes will be elucidated by fluorescence and 1H and 31P NMR spectroscopies.
Transmembrane carriers for phosphorylated compounds will make it possible to selectively introduce nucleotides into liposomes and cells, opening the way to fuel enzymes with adenosine triphosphate (ATP) in liposomes as biotechnological nanoreactors and to study nucleotide-dependent biochemical processes in cells.
Summary
This ORGANITRA project addresses transmembrane transport. Lipid bilayer membranes not only define the borders of cells and their compartments but are also implicated in metabolic processes and signal transduction. Membranes function as impermeable barriers for ionic and hydrophilic species which can only cross the membrane with the aid of dedicated membrane proteins.
For biotechnological and biophysical applications, the development of anion carriers that can bind an anion and transport it across the lipid bilayer could be of great relevance. In this project, synthetic anion receptors will be developed to bind biologically relevant organic phosphorylated compounds, like nucleotides. These receptors will then be used to transport these organophosphates across membranes.
The receptors will be synthesised by dynamic combinatorial chemistry. Building blocks containing urea or thiourea groups, for efficient phosphate binding, will be connected to multi-armed scaffolds by hydrazone groups. The dynamic character of these bonds will be used to identify efficient receptors from libraries of compounds, using different phosphorylated compounds as templates. With this approach, selective receptors for different nucleotides and related compounds can be obtained.
The transport performance of the receptors will be evaluated with newly developed assays. Liposomes will be used as model systems and transport will be monitored by fluorescence spectroscopy using the quenching of the emission of an encapsulated phosphate sensitive dye. Additionally, the mechanism of the transport processes will be elucidated by fluorescence and 1H and 31P NMR spectroscopies.
Transmembrane carriers for phosphorylated compounds will make it possible to selectively introduce nucleotides into liposomes and cells, opening the way to fuel enzymes with adenosine triphosphate (ATP) in liposomes as biotechnological nanoreactors and to study nucleotide-dependent biochemical processes in cells.
Max ERC Funding
1 485 274 €
Duration
Start date: 2019-01-01, End date: 2023-12-31