Project acronym FRECOM
Project Nonlinear-Distortion Free Communication over the Optical Fibre Channel
Researcher (PI) Darko ZIBAR
Host Institution (HI) DANMARKS TEKNISKE UNIVERSITET
Call Details Consolidator Grant (CoG), PE7, ERC-2017-COG
Summary Motivation
The enormous growth in the Internet of Things and server farms for cloud services has increased the strain on the optical communication infrastructure. By 2025, our society will require data rates that are physically impossible to implement using current state-of-the-art optical communication technologies. This is because fibre-optic communication systems are rapidly approaching their fundamental capacity limits imposed by the Kerr nonlinearity of the fibre. Nonlinear distortion limits the ability to transport and detect the information stream. This is a very critical problem for increasing the data rates of any optical fibre communication system.
Proposed research
The only physical quantities not affected by the nonlinearity are eigenvalues, associated with the optical fibre propagation equation. Eigenvalues are thereby ideal candidates for information transport. The concept of eigenvalues is derived under the assumption that the fibre is lossless and that there is no noise in the system which is not strictly correct. Therefore, novel methodologies and concepts for the design of a noise mitigating receiver and a noise robust transmitter are needed to reap the full benefits of optical communication systems employing eigenvalues. This proposal will develop such strategies. This will be achieved by combining, for the first time, the fields of nonlinear optics, optical communication and nonlinear digital signal processing. The results from the project will be verified experimentally, and will form the basis for a new generation of commercial optical communication systems.
Preliminary results
Our proof-of-concept results demonstrate, for the first time, that noise can be handled by employing novel receiver concepts. An order of magnitude improvement compared to the state-of-the-art is demonstrated.
Environment
The research will be carried out in close cooperation with leading groups at Stanford University and Technical University of Munich.
Summary
Motivation
The enormous growth in the Internet of Things and server farms for cloud services has increased the strain on the optical communication infrastructure. By 2025, our society will require data rates that are physically impossible to implement using current state-of-the-art optical communication technologies. This is because fibre-optic communication systems are rapidly approaching their fundamental capacity limits imposed by the Kerr nonlinearity of the fibre. Nonlinear distortion limits the ability to transport and detect the information stream. This is a very critical problem for increasing the data rates of any optical fibre communication system.
Proposed research
The only physical quantities not affected by the nonlinearity are eigenvalues, associated with the optical fibre propagation equation. Eigenvalues are thereby ideal candidates for information transport. The concept of eigenvalues is derived under the assumption that the fibre is lossless and that there is no noise in the system which is not strictly correct. Therefore, novel methodologies and concepts for the design of a noise mitigating receiver and a noise robust transmitter are needed to reap the full benefits of optical communication systems employing eigenvalues. This proposal will develop such strategies. This will be achieved by combining, for the first time, the fields of nonlinear optics, optical communication and nonlinear digital signal processing. The results from the project will be verified experimentally, and will form the basis for a new generation of commercial optical communication systems.
Preliminary results
Our proof-of-concept results demonstrate, for the first time, that noise can be handled by employing novel receiver concepts. An order of magnitude improvement compared to the state-of-the-art is demonstrated.
Environment
The research will be carried out in close cooperation with leading groups at Stanford University and Technical University of Munich.
Max ERC Funding
2 000 000 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym GET-UP BAT
Project GPCR Exploitation To Unlock the Power of Brown/Beige Adipose Tissue
Researcher (PI) Zachary Philip Gerhart-Hines
Host Institution (HI) KOBENHAVNS UNIVERSITET
Call Details Proof of Concept (PoC), ERC-2017-PoC
Summary Hundreds of millions of people suffer from obesity and diabetes worldwide. These diseases diminish both life quality and expectancy and new treatment strategies are desperately needed. One possible approach is to target the calorie-burning and glucose-consuming functions of brown and beige adipose tissue (B/BAT). Previous attempts to harness the therapeutic potential of B/BAT have largely focused on the β-adrenergic class of G protein-coupled receptors (GCPRs). Unfortunately, these methods are hindered by adverse cardiovascular side effects linked to adrenergic activation. Therefore, uncovering non-adrenergic alternatives to exploit B/BAT for treating metabolic disease holds the potential for enormous societal and economic benefit.
Here, we propose the activation of one such non-adrenergic GPCR on B/BAT as a means to treat obesity and diabetes. We identified this GPCR from a screen of B/BAT receptors performed in my ERC Starting Grant project, aCROBAT. We found that treating brown adipose cells with the peptide ligand for this GPCR increased oxygen consumption. We recognized the therapeutic potential after observing that ligand administration in vivo lowered bodyweight and improved insulin sensitivity in obese mice. However, the resources required to develop this discovery into a tangible innovation extend beyond the scope of aCROBAT.
Consequently, I’m applying for an ERC PoC grant for critical support to take the initial steps to commercial application. Specifically, we seek to strengthen our IP position by developing patentable, longer-lived analogues of the ligand. Importantly, we will test these lead compounds head-to-head and in combination with current treatment options. We have assembled a team of experts to address key aspects from peptide design and pharmacology to IPR strategy and commercial development. Combined with our validated in vitro and in vivo testing platforms, we are ideally poised to maximize innovation potential.
Summary
Hundreds of millions of people suffer from obesity and diabetes worldwide. These diseases diminish both life quality and expectancy and new treatment strategies are desperately needed. One possible approach is to target the calorie-burning and glucose-consuming functions of brown and beige adipose tissue (B/BAT). Previous attempts to harness the therapeutic potential of B/BAT have largely focused on the β-adrenergic class of G protein-coupled receptors (GCPRs). Unfortunately, these methods are hindered by adverse cardiovascular side effects linked to adrenergic activation. Therefore, uncovering non-adrenergic alternatives to exploit B/BAT for treating metabolic disease holds the potential for enormous societal and economic benefit.
Here, we propose the activation of one such non-adrenergic GPCR on B/BAT as a means to treat obesity and diabetes. We identified this GPCR from a screen of B/BAT receptors performed in my ERC Starting Grant project, aCROBAT. We found that treating brown adipose cells with the peptide ligand for this GPCR increased oxygen consumption. We recognized the therapeutic potential after observing that ligand administration in vivo lowered bodyweight and improved insulin sensitivity in obese mice. However, the resources required to develop this discovery into a tangible innovation extend beyond the scope of aCROBAT.
Consequently, I’m applying for an ERC PoC grant for critical support to take the initial steps to commercial application. Specifically, we seek to strengthen our IP position by developing patentable, longer-lived analogues of the ligand. Importantly, we will test these lead compounds head-to-head and in combination with current treatment options. We have assembled a team of experts to address key aspects from peptide design and pharmacology to IPR strategy and commercial development. Combined with our validated in vitro and in vivo testing platforms, we are ideally poised to maximize innovation potential.
Max ERC Funding
149 986 €
Duration
Start date: 2017-10-01, End date: 2018-08-31
Project acronym GlycoSkin
Project Dissection of Glycan Function by Engineered Tissue Models
Researcher (PI) Hans Heugh Wandall
Host Institution (HI) KOBENHAVNS UNIVERSITET
Call Details Consolidator Grant (CoG), LS1, ERC-2017-COG
Summary Glycans decorate most proteins, cover cell membranes, and represent one of the four building blocks of life, together with nucleic acids, lipids, and amino acids. Yet, our understanding of how glycans influence the life of cells and organisms is limited, and only few functions have been molecularly dissected. Glycans present a huge structural diversity with species and cell- type specificity that underlie specific biological functions. However, more than half a century of research has been severely hampered by the complexity and technical difficulties with analyzing glycans. While, the glycome (all glycans in a cell or organism) is a difficult entry point for discovery, the glycogenome (all genes involved in glycosylation) in contrast is a feasible entry point, because most of the genes controlling glycosylation are now known, and there are fewer technical barriers especially with the emergence of gene editing technologies.
Our research group has pioneered the “glycogenome entry” to functional glycomics using gene editing to simplify glycosylation in cells. My research group has pioneered a next generation approach using organotypic tissue models in combination with sophisticated mass spectrometry to decipher glycan functions. The tissue model has provided the first evidence that aberrant glycosylation in cancer directly induce oncogenic features, and that glycosylation of Herpes virus is essential for viral propagation. In this proposal, I will use step-by-step genetic deconstruction of glycosylation capacities in organotypic tissue models for broad discovery and dissection of specific structure-function relationships driving normal epithelial formation, transformation and interaction with the microbiome. Specifically, I will address:
1. How glycosylation affect and shape epithelial homeostasis and transformation
2. How regulation of glycosylation fine-tunes protein functions
3. How glycans influence host-pathogen interactions in “real” epithelial tissue models
Summary
Glycans decorate most proteins, cover cell membranes, and represent one of the four building blocks of life, together with nucleic acids, lipids, and amino acids. Yet, our understanding of how glycans influence the life of cells and organisms is limited, and only few functions have been molecularly dissected. Glycans present a huge structural diversity with species and cell- type specificity that underlie specific biological functions. However, more than half a century of research has been severely hampered by the complexity and technical difficulties with analyzing glycans. While, the glycome (all glycans in a cell or organism) is a difficult entry point for discovery, the glycogenome (all genes involved in glycosylation) in contrast is a feasible entry point, because most of the genes controlling glycosylation are now known, and there are fewer technical barriers especially with the emergence of gene editing technologies.
Our research group has pioneered the “glycogenome entry” to functional glycomics using gene editing to simplify glycosylation in cells. My research group has pioneered a next generation approach using organotypic tissue models in combination with sophisticated mass spectrometry to decipher glycan functions. The tissue model has provided the first evidence that aberrant glycosylation in cancer directly induce oncogenic features, and that glycosylation of Herpes virus is essential for viral propagation. In this proposal, I will use step-by-step genetic deconstruction of glycosylation capacities in organotypic tissue models for broad discovery and dissection of specific structure-function relationships driving normal epithelial formation, transformation and interaction with the microbiome. Specifically, I will address:
1. How glycosylation affect and shape epithelial homeostasis and transformation
2. How regulation of glycosylation fine-tunes protein functions
3. How glycans influence host-pathogen interactions in “real” epithelial tissue models
Max ERC Funding
1 995 199 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym INTERACTION
Project Cloud-cloud interaction in convective precipitation
Researcher (PI) Jan Olaf Mirko Härter
Host Institution (HI) KOBENHAVNS UNIVERSITET
Call Details Consolidator Grant (CoG), PE10, ERC-2017-COG
Summary State-of-the-art simulations and observations highlight the self-organization of convective clouds. Our recent work shows two aspects: these clouds are capable of unexpected increase in extreme precipitation when temperature rises; interactions between clouds produce the extremes. As clouds interact, they organize in space and carry a memory of past interaction and precipitation events. This evidence reveals a severe shortcoming of the conventional separation into "forcing" and "feedback" in climate model parameterizations, namely that the "feedback" develops a dynamics of its own, thus driving the extremes. The major scientific challenge tackled in INTERACTION is to make a ground-breaking departure from the established paradigm of "quasi-equilibrium" and instantaneous convective adjustment, traditionally used for parameterization of "sub-grid-scale processes" in general circulation models. To capture convective self-organization and extremes, the out-of-equilibrium cloud field must be described. In INTERACTION, I will produce a conceptual model for the out-of-equilibrium system of interacting clouds. Once triggered, clouds precipitate on a short timescale, but then relax in a "recovery" state where further precipitation is suppressed. Interaction with the surroundings occurs through cold pool outflow,facilitating the onset of new events in the wake. I will perform tailored numerical experiments using cutting-edge large-eddy simulations and very-high-resolution observational analysis to determine the effective interactions in the cloud system. Going beyond traditional forcing-and-feedback descriptions, I emphasize gradual self-organization with explicit temperature dependence. The list of key variables of atmospheric water vapor, temperature and precipitation must therefore be amended by variables describing organization. Capturing the self-organization of convection is essential for understanding of the risk of precipitation extremes today and in a future climate.
Summary
State-of-the-art simulations and observations highlight the self-organization of convective clouds. Our recent work shows two aspects: these clouds are capable of unexpected increase in extreme precipitation when temperature rises; interactions between clouds produce the extremes. As clouds interact, they organize in space and carry a memory of past interaction and precipitation events. This evidence reveals a severe shortcoming of the conventional separation into "forcing" and "feedback" in climate model parameterizations, namely that the "feedback" develops a dynamics of its own, thus driving the extremes. The major scientific challenge tackled in INTERACTION is to make a ground-breaking departure from the established paradigm of "quasi-equilibrium" and instantaneous convective adjustment, traditionally used for parameterization of "sub-grid-scale processes" in general circulation models. To capture convective self-organization and extremes, the out-of-equilibrium cloud field must be described. In INTERACTION, I will produce a conceptual model for the out-of-equilibrium system of interacting clouds. Once triggered, clouds precipitate on a short timescale, but then relax in a "recovery" state where further precipitation is suppressed. Interaction with the surroundings occurs through cold pool outflow,facilitating the onset of new events in the wake. I will perform tailored numerical experiments using cutting-edge large-eddy simulations and very-high-resolution observational analysis to determine the effective interactions in the cloud system. Going beyond traditional forcing-and-feedback descriptions, I emphasize gradual self-organization with explicit temperature dependence. The list of key variables of atmospheric water vapor, temperature and precipitation must therefore be amended by variables describing organization. Capturing the self-organization of convection is essential for understanding of the risk of precipitation extremes today and in a future climate.
Max ERC Funding
1 314 800 €
Duration
Start date: 2018-07-01, End date: 2023-06-30
Project acronym INTERTRAP
Project Integrated absolute dating approach for terrestrial records of past climate using trapped charge methods
Researcher (PI) Alida Iulia Gabor
Host Institution (HI) UNIVERSITATEA BABES BOLYAI
Call Details Starting Grant (StG), PE10, ERC-2015-STG
Summary The practice of tuning different climate proxies prevents the observation of regional response times of terrestrial archives to global changes. Thus, it is imperative to develop correlation protocols based on absolute chronologies. Loess-palaeosol deposits are continental archives of Quaternary paleoclimates and loess is generally considered an ideal material for the application of luminescence dating. The agreement obtained for 10-20 ka ages using different techniques has given us confidence in using the state of the art measurement protocols for young deposits, as confirmed by comparison with independent age control. INTERTRAP proposes detailed investigations of loess samples from three continents collected in close proximity to the transition to the recent soil, with the purpose of obtaining a temporal quantification of the ending of the Late Tardiglacial and the beginning of the Holocene. However, a series of recent luminescence investigations carried out on quartz of different grain sizes extracted from Romanian and Serbian loess yielded severe age discrepancies for ages >~40 ka. While the cause of this observation is hitherto not fully explained, our ongoing studies on Chinese loess prove that it is a general effect, potentially affecting deposits worldwide, and raising doubts on previous chronologies. Methodological studies within INTERTRAP will develop an integrated approach using optically stimulated luminescence, thermoluminescence and electron spin resonance investigations. This part of the study aims at unravelling the mechanism responsible for the observed discrepancies and developing innovative trapped charge dating measurement protocols based on quartz that will yield reliable ages for and beyond the last interglacial glacial cycle.
Summary
The practice of tuning different climate proxies prevents the observation of regional response times of terrestrial archives to global changes. Thus, it is imperative to develop correlation protocols based on absolute chronologies. Loess-palaeosol deposits are continental archives of Quaternary paleoclimates and loess is generally considered an ideal material for the application of luminescence dating. The agreement obtained for 10-20 ka ages using different techniques has given us confidence in using the state of the art measurement protocols for young deposits, as confirmed by comparison with independent age control. INTERTRAP proposes detailed investigations of loess samples from three continents collected in close proximity to the transition to the recent soil, with the purpose of obtaining a temporal quantification of the ending of the Late Tardiglacial and the beginning of the Holocene. However, a series of recent luminescence investigations carried out on quartz of different grain sizes extracted from Romanian and Serbian loess yielded severe age discrepancies for ages >~40 ka. While the cause of this observation is hitherto not fully explained, our ongoing studies on Chinese loess prove that it is a general effect, potentially affecting deposits worldwide, and raising doubts on previous chronologies. Methodological studies within INTERTRAP will develop an integrated approach using optically stimulated luminescence, thermoluminescence and electron spin resonance investigations. This part of the study aims at unravelling the mechanism responsible for the observed discrepancies and developing innovative trapped charge dating measurement protocols based on quartz that will yield reliable ages for and beyond the last interglacial glacial cycle.
Max ERC Funding
1 500 000 €
Duration
Start date: 2016-04-01, End date: 2021-03-31
Project acronym LIMA
Project Controlling light-matter interactions by quantum designed 2D materials
Researcher (PI) Kristian Sommer THYGESEN
Host Institution (HI) DANMARKS TEKNISKE UNIVERSITET
Call Details Consolidator Grant (CoG), PE3, ERC-2017-COG
Summary Progress within many contemporary or emergent technologies, including photovoltaics, single-photon light sources, and plasmonics, depends crucially on our ability to control the interactions between light and matter. The complexity of the light-matter interactions has made the development of photonic materials a slow, expensive, and empirical-based science. Of particular importance are the detrimental non-radiative processes mediated by defects and phonons that lead to efficiency losses in photovoltaics, reduce the quantum efficiency of single-photon emitters, and cause Ohmic losses in the metallic components of plasmonic devices. LIMA will develop ground breaking methods for calculating non-radiative relaxation rates in real materials from first principles. These will be used to evaluate key performance parameters such as photo-carrier lifetimes and plasmon propagation lengths and thus facilitate a realistic computational assessment of the application potential of photonic materials. In terms of materials, LIMA will focus on the emergent class of atomically thin two-dimensional (2D) materials. The possibility of combining different 2D materials into van der Waals heterostructures (vdWHs) provides a unique platform for controlling light-matter interactions with atomic scale precision. Multi-scale methods for predicting quasiparticle band structures of general, incommensurable vdWHs will be developed and used to design novel photonic materials with tailored light dispersion and multi-junction solar cells with high absorption and low thermalization losses. High-throughput computational screening will be used to identify novel color centers in 2D materials with potential to act as single-photon sources with high quantum yield and narrow linewidths, which are urgently needed by leading quantum technologies. The possibilities of controlling the color centers via strain engineering and light management will be explored in close collaboration with experimentalists.
Summary
Progress within many contemporary or emergent technologies, including photovoltaics, single-photon light sources, and plasmonics, depends crucially on our ability to control the interactions between light and matter. The complexity of the light-matter interactions has made the development of photonic materials a slow, expensive, and empirical-based science. Of particular importance are the detrimental non-radiative processes mediated by defects and phonons that lead to efficiency losses in photovoltaics, reduce the quantum efficiency of single-photon emitters, and cause Ohmic losses in the metallic components of plasmonic devices. LIMA will develop ground breaking methods for calculating non-radiative relaxation rates in real materials from first principles. These will be used to evaluate key performance parameters such as photo-carrier lifetimes and plasmon propagation lengths and thus facilitate a realistic computational assessment of the application potential of photonic materials. In terms of materials, LIMA will focus on the emergent class of atomically thin two-dimensional (2D) materials. The possibility of combining different 2D materials into van der Waals heterostructures (vdWHs) provides a unique platform for controlling light-matter interactions with atomic scale precision. Multi-scale methods for predicting quasiparticle band structures of general, incommensurable vdWHs will be developed and used to design novel photonic materials with tailored light dispersion and multi-junction solar cells with high absorption and low thermalization losses. High-throughput computational screening will be used to identify novel color centers in 2D materials with potential to act as single-photon sources with high quantum yield and narrow linewidths, which are urgently needed by leading quantum technologies. The possibilities of controlling the color centers via strain engineering and light management will be explored in close collaboration with experimentalists.
Max ERC Funding
1 951 354 €
Duration
Start date: 2018-04-01, End date: 2023-03-31
Project acronym Loops and groups
Project Loops and groups: Geodesics, moduli spaces, and infinite discrete groups via string topology and homological stability
Researcher (PI) Nathalie Anne M. Wahl
Host Institution (HI) KOBENHAVNS UNIVERSITET
Call Details Consolidator Grant (CoG), PE1, ERC-2017-COG
Summary This proposal lies at the intersection of algebra, topology, and geometry, with the scientific goal of answering central questions about homological stability, geodesics on manifolds, and the moduli space of Riemann surfaces. Homological stability is a subject that has seen spectacular progress in recent years, and recent work of the PI has opened up new perspectives on this field, through, among other things, associating a canonical family of spaces to any stability problem. The first two goals of the proposal are to give conditions under which this family of spaces is highly connected, and to use this to prove homological and representation stability theorems, with determination of the stable homology. Particular attention is given to Thompson-like groups, building on a recent breakthrough of the PI with Szymik. The last two goals concern geodesics and moduli spaces via string topology: The third goal seeks a geometric construction of compactified string topology, which we propose to use to address counting problems for geodesics on manifolds. Finally our fourth goal is to use compactified string topology to study the harmonic compactification itself, and give a new approach to finding families of unstable homology classes in the moduli space of Riemann surfaces. The feasibility of the last goals is demonstrated by the PIs earlier algebraic work in this direction; the proposal is to incorporate geometry in a much more fundamental way.
The project combines breakthrough methods from homotopy theory with methods from algebraic, differential and geometric topology. Some of the goals are high risk, but we note that in those cases even partial results will be of significant interest. The PI has a proven track record at the international forefront of research, and as a research leader, e.g., through a previous ERC Starting Grant. The research team will consist of the PI together with 3 PhD students and 3 postdocs in total during the 5 years.
Summary
This proposal lies at the intersection of algebra, topology, and geometry, with the scientific goal of answering central questions about homological stability, geodesics on manifolds, and the moduli space of Riemann surfaces. Homological stability is a subject that has seen spectacular progress in recent years, and recent work of the PI has opened up new perspectives on this field, through, among other things, associating a canonical family of spaces to any stability problem. The first two goals of the proposal are to give conditions under which this family of spaces is highly connected, and to use this to prove homological and representation stability theorems, with determination of the stable homology. Particular attention is given to Thompson-like groups, building on a recent breakthrough of the PI with Szymik. The last two goals concern geodesics and moduli spaces via string topology: The third goal seeks a geometric construction of compactified string topology, which we propose to use to address counting problems for geodesics on manifolds. Finally our fourth goal is to use compactified string topology to study the harmonic compactification itself, and give a new approach to finding families of unstable homology classes in the moduli space of Riemann surfaces. The feasibility of the last goals is demonstrated by the PIs earlier algebraic work in this direction; the proposal is to incorporate geometry in a much more fundamental way.
The project combines breakthrough methods from homotopy theory with methods from algebraic, differential and geometric topology. Some of the goals are high risk, but we note that in those cases even partial results will be of significant interest. The PI has a proven track record at the international forefront of research, and as a research leader, e.g., through a previous ERC Starting Grant. The research team will consist of the PI together with 3 PhD students and 3 postdocs in total during the 5 years.
Max ERC Funding
1 864 419 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym M4D
Project Metal Microstructures in Four Dimensions
Researcher (PI) Dorte JUUL JENSEN
Host Institution (HI) DANMARKS TEKNISKE UNIVERSITET
Call Details Advanced Grant (AdG), PE8, ERC-2017-ADG
Summary The goals are:
1) to develop a universal laboratory-based 4D X-ray microscope with potentials in the broad field of materials science and beyond;
2) to advance metal research by quantifying local microstructural variations using the new 4D tool and by including the effects hereof in the understanding and modelling of industrially relevant metals.
Today, high resolution 4D (x,y,z,time) crystallographic characterization of materials is possible only at large international facilities. This is a serious limitation preventing the common use. The new technique will allow such 4D characterization to be carried out at home laboratories, thereby wide spreading this powerful tool.
Whereas current metal research mainly focuses on average properties, local microstructural variations are present in all metals on several length scales, and are often of critical importance for the properties and performance of the metal. In this project, the new technique will be the cornerstone in studies of such variations in three types of metallic materials: 3D printed, multilayered and micrometre-scale metals. Effects of local variations on the subsequent microstructural evolution will be followed during deformation and annealing, i.e. during processes typical for manufacturing, and occurring during in-service operation.
Current models largely ignore the presence of local microstructural variations and lack predictive power. Based on the new experimental data, three models operating on different length scales will be improved and combined, namely crystal plasticity finite element, phase field and molecular dynamics models. The main novelty here relates to the full 4D validation of the models, which has not been possible hitherto because of lack of sufficient experimental data.
The resulting fundamental understanding of the inherent microstructural variations and the new models are foreseen to be an integral part of the future design of metallic materials for high performance applications.
Summary
The goals are:
1) to develop a universal laboratory-based 4D X-ray microscope with potentials in the broad field of materials science and beyond;
2) to advance metal research by quantifying local microstructural variations using the new 4D tool and by including the effects hereof in the understanding and modelling of industrially relevant metals.
Today, high resolution 4D (x,y,z,time) crystallographic characterization of materials is possible only at large international facilities. This is a serious limitation preventing the common use. The new technique will allow such 4D characterization to be carried out at home laboratories, thereby wide spreading this powerful tool.
Whereas current metal research mainly focuses on average properties, local microstructural variations are present in all metals on several length scales, and are often of critical importance for the properties and performance of the metal. In this project, the new technique will be the cornerstone in studies of such variations in three types of metallic materials: 3D printed, multilayered and micrometre-scale metals. Effects of local variations on the subsequent microstructural evolution will be followed during deformation and annealing, i.e. during processes typical for manufacturing, and occurring during in-service operation.
Current models largely ignore the presence of local microstructural variations and lack predictive power. Based on the new experimental data, three models operating on different length scales will be improved and combined, namely crystal plasticity finite element, phase field and molecular dynamics models. The main novelty here relates to the full 4D validation of the models, which has not been possible hitherto because of lack of sufficient experimental data.
The resulting fundamental understanding of the inherent microstructural variations and the new models are foreseen to be an integral part of the future design of metallic materials for high performance applications.
Max ERC Funding
2 496 519 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym MaCChines
Project Molecular machines based on coiled-coil protein origami
Researcher (PI) Roman JERALA
Host Institution (HI) KEMIJSKI INSTITUT
Call Details Advanced Grant (AdG), LS9, ERC-2017-ADG
Summary Proteins are the most versatile and complex smart nanomaterials, forming molecular machines and performing numerous functions from structure building, recognition, catalysis to locomotion. Nature however explored only a tiny fraction of possible protein sequences and structures. Design of proteins with new, in nature unseen shapes and features, offers high rewards for medicine, technology and science. In 2013 my group pioneered the design of a new type of modular coiled-coil protein origami (CCPO) folds. This type of de novo designed proteins are defined by the sequence of coiled-coil (CC) dimer-forming modules that are concatenated by flexible linkers into a single polypeptide chain that self-assembles into a polyhedral cage based on pairwise CC interactions. This is in contrast to naturally evolved proteins where their fold is defined by a compact hydrophobic core. We recently demonstrated the robustness of this strategy by the largest de novo designed single chain protein, construction of tetrahedral, pyramid, trigonal prism and bipyramid cages that self-assemble in vivo.
This proposal builds on unique advantages of CCPOs and represents a new frontier of this branch of protein design science. I propose to introduce functional domains into selected positions of CCPO cages, implement new types of building modules that will enable regulated CCPO assembly and disassembly, test new strategies of caging and release of cargo molecules for targeted delivery, design knotted and crosslinked protein cages and introduce toehold displacement for the regulated structural rearrangement of CCPOs required for designed molecular machines, which will be demonstrated on protein nanotweezers. Technology for the positional combinatorial library-based single pot assembly of CCPO genes will provide high throughput of CCPO variants. Project will result in new methodology, understanding of potentials of CCPOs for designed molecular machines and in demonstration of different applications.
Summary
Proteins are the most versatile and complex smart nanomaterials, forming molecular machines and performing numerous functions from structure building, recognition, catalysis to locomotion. Nature however explored only a tiny fraction of possible protein sequences and structures. Design of proteins with new, in nature unseen shapes and features, offers high rewards for medicine, technology and science. In 2013 my group pioneered the design of a new type of modular coiled-coil protein origami (CCPO) folds. This type of de novo designed proteins are defined by the sequence of coiled-coil (CC) dimer-forming modules that are concatenated by flexible linkers into a single polypeptide chain that self-assembles into a polyhedral cage based on pairwise CC interactions. This is in contrast to naturally evolved proteins where their fold is defined by a compact hydrophobic core. We recently demonstrated the robustness of this strategy by the largest de novo designed single chain protein, construction of tetrahedral, pyramid, trigonal prism and bipyramid cages that self-assemble in vivo.
This proposal builds on unique advantages of CCPOs and represents a new frontier of this branch of protein design science. I propose to introduce functional domains into selected positions of CCPO cages, implement new types of building modules that will enable regulated CCPO assembly and disassembly, test new strategies of caging and release of cargo molecules for targeted delivery, design knotted and crosslinked protein cages and introduce toehold displacement for the regulated structural rearrangement of CCPOs required for designed molecular machines, which will be demonstrated on protein nanotweezers. Technology for the positional combinatorial library-based single pot assembly of CCPO genes will provide high throughput of CCPO variants. Project will result in new methodology, understanding of potentials of CCPOs for designed molecular machines and in demonstration of different applications.
Max ERC Funding
2 497 125 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym MATRICAN
Project Matrix during cancer progression
Researcher (PI) Janine Terra Erler
Host Institution (HI) KOBENHAVNS UNIVERSITET
Call Details Consolidator Grant (CoG), LS4, ERC-2015-CoG
Summary The extracellular matrix (ECM) is known to play a critical role in driving cancer progression, and yet we lack knowledge of its composition and structure. The goal of my ERC project is to investigate how alterations in biochemical composition and structural properties of the ECM during cancer progression impact on cell behaviour to drive metastasis, which is responsible for over 90% of cancer patient deaths. In order to do this, my lab has developed a method to in situ decellularise organs leaving structurally intact ECM scaffolds for subsequent analysis or for repopulation to study cell-ECM interactions in situ. We have deployed our method to decellularise primary tumour and metastatic organs in mice bearing orthotopic breast cancer tumours for subsequent quantitative global mass spectrometry (MS) proteomics, spatio-structural mapping of ECM components in 3D, and live imaging of repopulated cells. We observed fundamental alterations in ECM composition and structure between normal and tumour, and primary and metastatic tissue. We have selected two ECM components specifically upregulated in metastatic organs for subsequent validation. We discovered a marked decrease in proteins associated with fibrillogenesis in metastatic organs and will investigate the impact of this on metastatic ECM stiffness. We will decellularise organs from transgenic mouse models of breast and pancreatic cancer, at specific stages during cancer progression to determine the evolution of global ECM composition and structure, and how this impacts on cell behaviour through functional perturbation. Finally, we shall validate relevance of findings to human disease through use of human cancer lines and analysis of human patient samples. The research proposed will provide ground-breaking insight into how the ECM regulates cellular behaviour during normal and pathological conditions, and will test new strategies to combat metastasis that could be translated into the clinic to benefit cancer patients.
Summary
The extracellular matrix (ECM) is known to play a critical role in driving cancer progression, and yet we lack knowledge of its composition and structure. The goal of my ERC project is to investigate how alterations in biochemical composition and structural properties of the ECM during cancer progression impact on cell behaviour to drive metastasis, which is responsible for over 90% of cancer patient deaths. In order to do this, my lab has developed a method to in situ decellularise organs leaving structurally intact ECM scaffolds for subsequent analysis or for repopulation to study cell-ECM interactions in situ. We have deployed our method to decellularise primary tumour and metastatic organs in mice bearing orthotopic breast cancer tumours for subsequent quantitative global mass spectrometry (MS) proteomics, spatio-structural mapping of ECM components in 3D, and live imaging of repopulated cells. We observed fundamental alterations in ECM composition and structure between normal and tumour, and primary and metastatic tissue. We have selected two ECM components specifically upregulated in metastatic organs for subsequent validation. We discovered a marked decrease in proteins associated with fibrillogenesis in metastatic organs and will investigate the impact of this on metastatic ECM stiffness. We will decellularise organs from transgenic mouse models of breast and pancreatic cancer, at specific stages during cancer progression to determine the evolution of global ECM composition and structure, and how this impacts on cell behaviour through functional perturbation. Finally, we shall validate relevance of findings to human disease through use of human cancer lines and analysis of human patient samples. The research proposed will provide ground-breaking insight into how the ECM regulates cellular behaviour during normal and pathological conditions, and will test new strategies to combat metastasis that could be translated into the clinic to benefit cancer patients.
Max ERC Funding
1 997 500 €
Duration
Start date: 2016-09-01, End date: 2021-08-31