Project acronym BIOCOM
Project Biotic community attributes and ecosystem functioning: implications for predicting and mitigating global change impacts
Researcher (PI) Fernando Tomás Maestre Gil
Host Institution (HI) UNIVERSIDAD REY JUAN CARLOS
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary Increases in nutrient availability and temperature, and changes in precipitation patterns and biodiversity are important components of global environmental change. Thus, it is imperative to understand their impacts on the functioning of natural ecosystems. Substantial research efforts are being currently devoted to predict how biodiversity will respond to global change. However, little is known on the relative importance of biodiversity against other attributes of biotic communities, such as species cover and spatial pattern, as a driver of ecosystem processes. Furthermore, the effects of global change on the relationships between these attributes and ecosystem functioning are virtually unknown. This project aims to evaluate the relationships between community attributes (species richness, composition, evenness, cover, and spatial pattern) and key processes related to ecosystem functioning under different global change scenarios. Its specific objectives are to: i) evaluate the relative importance of community attributes as drivers of ecosystem functioning, ii) assess how multiple global change drivers will affect key ecosystem processes, iii) test whether global change drivers modify observed community attributes-ecosystem functioning relationships, iv) develop models to forecast global change effects on ecosystem functioning, and v) set up protocols for the establishment of mitigation actions based on the results obtained. They will be achieved by integrating experimental and modeling approaches conducted with multiple biotic communities at different spatial scales. Such integrated framework has not been tackled before, and constitutes a ground breaking advance over current research efforts on global change. This proposal will also open the door to new research lines exploring the functional role of community attributes and their importance as modulators of ecosystem responses to global change.
Summary
Increases in nutrient availability and temperature, and changes in precipitation patterns and biodiversity are important components of global environmental change. Thus, it is imperative to understand their impacts on the functioning of natural ecosystems. Substantial research efforts are being currently devoted to predict how biodiversity will respond to global change. However, little is known on the relative importance of biodiversity against other attributes of biotic communities, such as species cover and spatial pattern, as a driver of ecosystem processes. Furthermore, the effects of global change on the relationships between these attributes and ecosystem functioning are virtually unknown. This project aims to evaluate the relationships between community attributes (species richness, composition, evenness, cover, and spatial pattern) and key processes related to ecosystem functioning under different global change scenarios. Its specific objectives are to: i) evaluate the relative importance of community attributes as drivers of ecosystem functioning, ii) assess how multiple global change drivers will affect key ecosystem processes, iii) test whether global change drivers modify observed community attributes-ecosystem functioning relationships, iv) develop models to forecast global change effects on ecosystem functioning, and v) set up protocols for the establishment of mitigation actions based on the results obtained. They will be achieved by integrating experimental and modeling approaches conducted with multiple biotic communities at different spatial scales. Such integrated framework has not been tackled before, and constitutes a ground breaking advance over current research efforts on global change. This proposal will also open the door to new research lines exploring the functional role of community attributes and their importance as modulators of ecosystem responses to global change.
Max ERC Funding
1 463 374 €
Duration
Start date: 2010-01-01, End date: 2015-09-30
Project acronym BIOTIME
Project Biological diversity in an inconstant world: temporal turnover in modified ecosystems
Researcher (PI) Anne Elizabeth Magurran
Host Institution (HI) THE UNIVERSITY COURT OF THE UNIVERSITY OF ST ANDREWS
Call Details Advanced Grant (AdG), LS8, ERC-2009-AdG
Summary This project addresses a key issue in fundamental research - one that has challenged ecologists ever since Darwin s time that is why some species are common, and others rare, and why, despite marked turnover at the level of individual species abundances, the structure of a community is generally conserved through time. Its aim is to examine the temporal dynamics of species abundance distributions (SADs), and to assess the capacity of these distributions to withstand change (resistance) and to recover from change (resilience). These are topical and important questions given the increasing impact that humans are having on the natural world. There are three components to the research. First, we will model SADs and predict responses to a range of events including climate change and the arrival of invasive species. A range of modeling approaches (including neutral, niche and statistical) will be adopted; by incorporating temporal turnover in hitherto static models we will advance the field. Second, we will test predictions concerning the resistance and resilience of SADs by a comparative analysis of existing data sets (that encompass communities in terrestrial, freshwater and marine environments for ecosystems extending from the poles to the tropics) and through a new field experiment that quantifies temporal turnover across a community (unicellular organisms to vertebrates) in relation to factors both natural (dispersal limitation) and anthropogenic (human disturbance) thought to shape SADs. In the final part of the project we will apply these new insights into the temporal dynamics of SADs to two important conservation challenges. These are 1) the conservation of biodiversity in a heavily utilized European landscape (Fife, Scotland) and 2) the conservation of biodiversity in Mamirauá and Amaña reserves in Amazonian flooded forest. Taken together this research will not only shed new light on the structure of ecological communities but will also aid conservation.
Summary
This project addresses a key issue in fundamental research - one that has challenged ecologists ever since Darwin s time that is why some species are common, and others rare, and why, despite marked turnover at the level of individual species abundances, the structure of a community is generally conserved through time. Its aim is to examine the temporal dynamics of species abundance distributions (SADs), and to assess the capacity of these distributions to withstand change (resistance) and to recover from change (resilience). These are topical and important questions given the increasing impact that humans are having on the natural world. There are three components to the research. First, we will model SADs and predict responses to a range of events including climate change and the arrival of invasive species. A range of modeling approaches (including neutral, niche and statistical) will be adopted; by incorporating temporal turnover in hitherto static models we will advance the field. Second, we will test predictions concerning the resistance and resilience of SADs by a comparative analysis of existing data sets (that encompass communities in terrestrial, freshwater and marine environments for ecosystems extending from the poles to the tropics) and through a new field experiment that quantifies temporal turnover across a community (unicellular organisms to vertebrates) in relation to factors both natural (dispersal limitation) and anthropogenic (human disturbance) thought to shape SADs. In the final part of the project we will apply these new insights into the temporal dynamics of SADs to two important conservation challenges. These are 1) the conservation of biodiversity in a heavily utilized European landscape (Fife, Scotland) and 2) the conservation of biodiversity in Mamirauá and Amaña reserves in Amazonian flooded forest. Taken together this research will not only shed new light on the structure of ecological communities but will also aid conservation.
Max ERC Funding
1 812 782 €
Duration
Start date: 2010-08-01, End date: 2016-01-31
Project acronym CORALWARM
Project Corals and global warming: The Mediterranean versus the Red Sea
Researcher (PI) Zvy Dubinsky
Host Institution (HI) BAR ILAN UNIVERSITY
Call Details Advanced Grant (AdG), LS8, ERC-2009-AdG
Summary CoralWarm will generate for the first time projections of temperate and subtropical coral survival by integrating sublethal temperature increase effects on metabolic and skeletal processes in Mediterranean and Red Sea key species. CoralWarm unique approach is from the nano- to the macro-scale, correlating molecular events to environmental processes. This will show new pathways to future investigations on cellular mechanisms linking environmental factors to final phenotype, potentially improving prediction powers and paleoclimatological interpretation. Biological and chemical expertise will merge, producing new interdisciplinary approaches for ecophysiology and biomineralization. Field transplantations will be combined with controlled experiments under IPCC scenarios. Corals will be grown in aquaria, exposing the Mediterranean species native to cooler waters to higher temperatures, and the Red Sea ones to gradually increasing above ambient warming seawater. Virtually all state-of-the-art methods will be used, by uniquely combining the investigators expertise. Expected results include responses of algal symbionts photosynthesis, host, symbiont and holobiont respiration, biomineralization rates and patterns, including colony architecture, and reproduction to temperature and pH gradients and combinations. Integration of molecular aspects of potential replacement of symbiont clades, changes in skeletal crystallography, with biochemical and physiological aspects of temperature response, will lead to a novel mechanistic model predicting changes in coral ecology and survival prospect. High-temperature tolerant clades and species will be revealed, allowing future bioremediation actions and establishment of coral refuges, saving corals and coral reefs for future generations.
Summary
CoralWarm will generate for the first time projections of temperate and subtropical coral survival by integrating sublethal temperature increase effects on metabolic and skeletal processes in Mediterranean and Red Sea key species. CoralWarm unique approach is from the nano- to the macro-scale, correlating molecular events to environmental processes. This will show new pathways to future investigations on cellular mechanisms linking environmental factors to final phenotype, potentially improving prediction powers and paleoclimatological interpretation. Biological and chemical expertise will merge, producing new interdisciplinary approaches for ecophysiology and biomineralization. Field transplantations will be combined with controlled experiments under IPCC scenarios. Corals will be grown in aquaria, exposing the Mediterranean species native to cooler waters to higher temperatures, and the Red Sea ones to gradually increasing above ambient warming seawater. Virtually all state-of-the-art methods will be used, by uniquely combining the investigators expertise. Expected results include responses of algal symbionts photosynthesis, host, symbiont and holobiont respiration, biomineralization rates and patterns, including colony architecture, and reproduction to temperature and pH gradients and combinations. Integration of molecular aspects of potential replacement of symbiont clades, changes in skeletal crystallography, with biochemical and physiological aspects of temperature response, will lead to a novel mechanistic model predicting changes in coral ecology and survival prospect. High-temperature tolerant clades and species will be revealed, allowing future bioremediation actions and establishment of coral refuges, saving corals and coral reefs for future generations.
Max ERC Funding
3 332 032 €
Duration
Start date: 2010-06-01, End date: 2016-05-31
Project acronym EMARES
Project Exploring Morphospaces in Adaptive Radiations to unravel Ecological Speciation
Researcher (PI) Paul Martin Brakefield
Host Institution (HI) THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE
Call Details Advanced Grant (AdG), LS8, ERC-2009-AdG
Summary 150 years from the Origin and we have yet to unravel how ecological speciation works, and how it leads to spectacular adaptive radiations. The process has two components: adaptation to ecological niches and production of new species. My aim is to make breakthroughs in understanding ecological speciation by the study of geographically parallel adaptive radiations in mycalesine butterflies that have yielded some 250 extant species in the Old World tropics. More empirical studies are needed because few radiations have been examined from many different perspectives (including in insects). It is not fully understood either how exactly radiation occurs or how exactly selection leads to speciation. This proposal provides a unique opportunity, outside a few vertebrate clades, to resolve this by fully integrating several lines of evidence and methodologies. My approach will be to study patterns of diversity and disparity in morphospace for several sets of key traits: 1) wing patterns, 2) larval host plant choice especially with respect to C3 and C4 photosynthesis, and 3) male secondary sexual traits and sex pheromones. We will collect phenotypic, genetic, developmental, and ecological data. Application of phylogenetic comparative methods to the relationships of all traits among all species will make inferences about the biological mechanisms that have driven diversification and speciation. The combination of surveys of morphospace, the use of comparative methods, and microevolutionary studies using laboratory models will provide a unique comprehensive view. Our analyses will distinguish among alternative patterns of adaptive radiations, test predictions from models, and move us forward in identifying the drivers of observed patterns.
Summary
150 years from the Origin and we have yet to unravel how ecological speciation works, and how it leads to spectacular adaptive radiations. The process has two components: adaptation to ecological niches and production of new species. My aim is to make breakthroughs in understanding ecological speciation by the study of geographically parallel adaptive radiations in mycalesine butterflies that have yielded some 250 extant species in the Old World tropics. More empirical studies are needed because few radiations have been examined from many different perspectives (including in insects). It is not fully understood either how exactly radiation occurs or how exactly selection leads to speciation. This proposal provides a unique opportunity, outside a few vertebrate clades, to resolve this by fully integrating several lines of evidence and methodologies. My approach will be to study patterns of diversity and disparity in morphospace for several sets of key traits: 1) wing patterns, 2) larval host plant choice especially with respect to C3 and C4 photosynthesis, and 3) male secondary sexual traits and sex pheromones. We will collect phenotypic, genetic, developmental, and ecological data. Application of phylogenetic comparative methods to the relationships of all traits among all species will make inferences about the biological mechanisms that have driven diversification and speciation. The combination of surveys of morphospace, the use of comparative methods, and microevolutionary studies using laboratory models will provide a unique comprehensive view. Our analyses will distinguish among alternative patterns of adaptive radiations, test predictions from models, and move us forward in identifying the drivers of observed patterns.
Max ERC Funding
2 474 128 €
Duration
Start date: 2010-10-01, End date: 2016-06-30
Project acronym EVOLEPID
Project Evolutionary Epidemiology of Infectious Diseases
Researcher (PI) Sylvain Michel Marie Gandon
Host Institution (HI) CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary Our ability to control infectious diseases relies on a better understanding of epidemiological and evolutionary dynamics of pathogens. I will develop a research program combining theoretical and experimental approaches. First, I will extend the theoretical framework of evolutionary epidemiology into several new directions to study (1) the evolution of host and pathogen key life-history traits (parasite virulence, host resistance and host manipulation by the parasite) and, (2) the dynamics of adaptation of pathogens in constant and variable environments. This part of the project will be grounded on both mathematical epidemiology and population genetics. Second, I will use two biological models to test some of these theoretical predictions both in the laboratory and in the field: (1) I will study the interaction between the avian malaria parasite (Plasmodium relictum) and its mosquito vector (Culex pipiens) to test some of the predictions generated on life-history evolution, and in particular on host manipulation by the parasite. (2) I will study the evolutionary dynamics of the coliphage phix174 under different scenarios of environmental heterogeneity to test the predictions issued from models on the dynamics of adaptation in variable environments. In addition, I will measure patterns of adaptation across space and time using natural samples of viral and bacterial communities. The originality of this project lays in the combination of different perspectives on the dynamics of infectious diseases, ranging from theoretical population genetics to experimental behavioural ecology and evolution. Combining these different perspectives will yield a more comprehensive view of the dynamics of infectious diseases and contribute to the improvement of public-health interventions.
Summary
Our ability to control infectious diseases relies on a better understanding of epidemiological and evolutionary dynamics of pathogens. I will develop a research program combining theoretical and experimental approaches. First, I will extend the theoretical framework of evolutionary epidemiology into several new directions to study (1) the evolution of host and pathogen key life-history traits (parasite virulence, host resistance and host manipulation by the parasite) and, (2) the dynamics of adaptation of pathogens in constant and variable environments. This part of the project will be grounded on both mathematical epidemiology and population genetics. Second, I will use two biological models to test some of these theoretical predictions both in the laboratory and in the field: (1) I will study the interaction between the avian malaria parasite (Plasmodium relictum) and its mosquito vector (Culex pipiens) to test some of the predictions generated on life-history evolution, and in particular on host manipulation by the parasite. (2) I will study the evolutionary dynamics of the coliphage phix174 under different scenarios of environmental heterogeneity to test the predictions issued from models on the dynamics of adaptation in variable environments. In addition, I will measure patterns of adaptation across space and time using natural samples of viral and bacterial communities. The originality of this project lays in the combination of different perspectives on the dynamics of infectious diseases, ranging from theoretical population genetics to experimental behavioural ecology and evolution. Combining these different perspectives will yield a more comprehensive view of the dynamics of infectious diseases and contribute to the improvement of public-health interventions.
Max ERC Funding
1 308 660 €
Duration
Start date: 2010-01-01, End date: 2014-12-31
Project acronym EVOMECH
Project The evolution of mechanisms that control behaviour
Researcher (PI) Alasdair Iain Houston
Host Institution (HI) UNIVERSITY OF BRISTOL
Call Details Advanced Grant (AdG), LS8, ERC-2009-AdG
Summary The approach to animal behaviour adopted by behavioural ecology is based on the investigation of the adaptive function of behaviour. A common assumption is that the action of natural selection on behaviour can be predicted without reference to processes inside the organism. I believe that it is time to combine an analysis based on evolution with one based on mechanisms, where a mechanism might be psychological, physiological or a combination of both. Animals have mechanisms that need to perform well in changing and dangerous environments. In order to understand the evolution of mechanisms, we need a fundamental change in the sort of models that are analysed. Instead of building complex models of optimal behaviour in simple environments, we need to evolve simple mechanisms that perform well in complex environments. This approach can provide a novel and unified perspective on a range of issues involving decisions by animals, including humans. The main objective of the project is to provide a comprehensive view of behaviour that can account for both adaptive and non-adaptive actions. This involves developing a novel theoretical framework based on an understanding of the underlying information-processing rules, combined with an evolutionary perspective that explains how any such rule came into existence in the first place. The theme of coping with uncertain and dangerous environments is used to investigate various features of behaviour such as rationality and self-control. These topics lead to the broader issues of the organisation of thought and emotions. The project also explores the consequences of the evolved behaviour and the implications for conservation and animal welfare.
Summary
The approach to animal behaviour adopted by behavioural ecology is based on the investigation of the adaptive function of behaviour. A common assumption is that the action of natural selection on behaviour can be predicted without reference to processes inside the organism. I believe that it is time to combine an analysis based on evolution with one based on mechanisms, where a mechanism might be psychological, physiological or a combination of both. Animals have mechanisms that need to perform well in changing and dangerous environments. In order to understand the evolution of mechanisms, we need a fundamental change in the sort of models that are analysed. Instead of building complex models of optimal behaviour in simple environments, we need to evolve simple mechanisms that perform well in complex environments. This approach can provide a novel and unified perspective on a range of issues involving decisions by animals, including humans. The main objective of the project is to provide a comprehensive view of behaviour that can account for both adaptive and non-adaptive actions. This involves developing a novel theoretical framework based on an understanding of the underlying information-processing rules, combined with an evolutionary perspective that explains how any such rule came into existence in the first place. The theme of coping with uncertain and dangerous environments is used to investigate various features of behaviour such as rationality and self-control. These topics lead to the broader issues of the organisation of thought and emotions. The project also explores the consequences of the evolved behaviour and the implications for conservation and animal welfare.
Max ERC Funding
1 749 277 €
Duration
Start date: 2010-06-01, End date: 2015-05-31
Project acronym EXPTEVOLCELEGANS
Project A study on the interaction among natural selection, mutation and recombination, with Caenorhabditis elegans experimental evolution
Researcher (PI) Henrique Nuno Patricio Carreira Pereira Teotonio
Host Institution (HI) ECOLE NORMALE SUPERIEURE
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary The process of adaptation to novel environments is of extraordinary importance to understand the existence of biological diversity. The development of a theory of adaptation during the last 150 years identified natural selection as its cause, and the conditions under which it depends on the existence of the heritable variation encoded in DNA sequences, introduced in finite populations by mutation, recombination and migration. Despite the considerable knowledge about the mechanism of evolution, an understanding of genetic basis of adaptation remains both a theoretical and an empirical challenge. In this project we propose to conduct an unprecedented large scale evolution experiment with the androdioecious nematode Caenorhabditis elegans, under varying levels of outcrossing rates, initial standing genetic variation and frequency of environmental change. With the integration of information from several levels of structural organization, from fitness-proxy and life-history phenotypes to genome wide RNA expression, it will be possible to determine the several genetic and environmental components of diversity. Furthermore, we will perform whole genome linkage disequilibrium (LD) association mapping with experimental evolution, thus determining at the DNA sequence level how the genome is organized and how it feeds back into the population genetic dynamics. Tests of evolutionary theory will be conducted with the data collected. Directional natural selection is expected to maintain genotype diversity, when there are non-linear interactions among several loci. But predominantly stabilizing selection will erode this genetic diversity. While in the first scenario outcrossing will be favoured, in the second it will be a hindrance to adaptation. After an initial characterization, we will work with ~90 populations and measure >104 phenotypes. For mapping we will assay an estimated 106 genotypes. Most of the analytical tools have already been developed.
Summary
The process of adaptation to novel environments is of extraordinary importance to understand the existence of biological diversity. The development of a theory of adaptation during the last 150 years identified natural selection as its cause, and the conditions under which it depends on the existence of the heritable variation encoded in DNA sequences, introduced in finite populations by mutation, recombination and migration. Despite the considerable knowledge about the mechanism of evolution, an understanding of genetic basis of adaptation remains both a theoretical and an empirical challenge. In this project we propose to conduct an unprecedented large scale evolution experiment with the androdioecious nematode Caenorhabditis elegans, under varying levels of outcrossing rates, initial standing genetic variation and frequency of environmental change. With the integration of information from several levels of structural organization, from fitness-proxy and life-history phenotypes to genome wide RNA expression, it will be possible to determine the several genetic and environmental components of diversity. Furthermore, we will perform whole genome linkage disequilibrium (LD) association mapping with experimental evolution, thus determining at the DNA sequence level how the genome is organized and how it feeds back into the population genetic dynamics. Tests of evolutionary theory will be conducted with the data collected. Directional natural selection is expected to maintain genotype diversity, when there are non-linear interactions among several loci. But predominantly stabilizing selection will erode this genetic diversity. While in the first scenario outcrossing will be favoured, in the second it will be a hindrance to adaptation. After an initial characterization, we will work with ~90 populations and measure >104 phenotypes. For mapping we will assay an estimated 106 genotypes. Most of the analytical tools have already been developed.
Max ERC Funding
1 694 000 €
Duration
Start date: 2010-02-01, End date: 2016-01-31
Project acronym ID-CAB
Project Individual differences in Collective Animal Behaviour
Researcher (PI) David Sumpter
Host Institution (HI) UPPSALA UNIVERSITET
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary One of the key challenges in scientific research is to link together our understanding of different levels of biological organisation. This challenge is fundamental to the scientific endeavour: from understand how genes interact to drive the cell, to how cells interact to form organisms, up to how organisms interact to form groups and societies. My own and the research of others has addressed this question in the context of the collective behaviour of animals. Mathematical models of complex systems have been used to successfully predict experimental outcome. Most previous studies are however limited in one important aspect: individuals are treated as identical units. The aim of the proposed research proposed is to investigate features which produce differences within the units. The model systems of our study will be sticklebacks, homing pigeons and house sparrows. Individuals can differ from each other on a range of time scales, from information acquired within the last few minutes, through socially learnt information, to genetically inherited differences. Through a series of experiments on each of the study species, the development of mathematical models which incorporate between individual differences, and novel forms of data analysis, we will begin to understand the role played by individual differences within groups. We will look at the rules of motion for fish and birds; the role of personality in decision-making and how short term information differences improve decision-making accuracy. Achieving the project objectives will greatly enhance our understanding of the relationship between individual animals and the groups they live in, as well as impacting on our understanding of individual differences in other areas of biology.
Summary
One of the key challenges in scientific research is to link together our understanding of different levels of biological organisation. This challenge is fundamental to the scientific endeavour: from understand how genes interact to drive the cell, to how cells interact to form organisms, up to how organisms interact to form groups and societies. My own and the research of others has addressed this question in the context of the collective behaviour of animals. Mathematical models of complex systems have been used to successfully predict experimental outcome. Most previous studies are however limited in one important aspect: individuals are treated as identical units. The aim of the proposed research proposed is to investigate features which produce differences within the units. The model systems of our study will be sticklebacks, homing pigeons and house sparrows. Individuals can differ from each other on a range of time scales, from information acquired within the last few minutes, through socially learnt information, to genetically inherited differences. Through a series of experiments on each of the study species, the development of mathematical models which incorporate between individual differences, and novel forms of data analysis, we will begin to understand the role played by individual differences within groups. We will look at the rules of motion for fish and birds; the role of personality in decision-making and how short term information differences improve decision-making accuracy. Achieving the project objectives will greatly enhance our understanding of the relationship between individual animals and the groups they live in, as well as impacting on our understanding of individual differences in other areas of biology.
Max ERC Funding
977 768 €
Duration
Start date: 2010-02-01, End date: 2015-01-31
Project acronym INTERACTINGMICROBES
Project Social Interactions in Microbes
Researcher (PI) Kevin Richard Foster
Host Institution (HI) THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary Modern cell biology rests upon the power of studying pure cultures, often in shaking flasks. However, in nature cell groups are complex systems that frequently contain genetically-distinct populations. This genetic diversity ranges from point mutations that separate normal and cancerous tissue, through different strains of malaria in a host, to bacterial biofilms that contain a myriad of species. My research focuses on how genetic variability affects and explains the biology of cell groups, using microbes as a model system. The presence of different genotypes in a cell group leads to the potential for strong interactions. It is not sufficient, therefore, to study single genotypes alone; we need a systems biology of cell groups. Towards this aim, we combine the theories of social evolution and collective behaviour with the empirical study of microbes in two main approaches. The first focuses on the effects of mutation-driven diversity on a key bacterial trait - polymer secretion - that is central to bacterial life. The second approach focuses on the genetic diversity that arises when strains and species mix together. Here, we are developing a set of assays to investigate the effects of strain and species mixing centred upon Pseudomonas aeruginosa; a pathogenic bacterium that forms biofilms in the cystic fibrosis lung. We combine biofilm assays with transcriptomics to characterize the mechanisms that allow P. aeruginosa to invade environments containing benign species that might otherwise afford protection to a host. By taking a stepwise strategy that systematically adds back components of the physical and social environment, we aim to break down the daunting complexity of natural microbe communities. The ultimate goal is to build a predictive framework that goes from the mechanisms of social interaction among cells up to the emergent properties of natural communities.
Summary
Modern cell biology rests upon the power of studying pure cultures, often in shaking flasks. However, in nature cell groups are complex systems that frequently contain genetically-distinct populations. This genetic diversity ranges from point mutations that separate normal and cancerous tissue, through different strains of malaria in a host, to bacterial biofilms that contain a myriad of species. My research focuses on how genetic variability affects and explains the biology of cell groups, using microbes as a model system. The presence of different genotypes in a cell group leads to the potential for strong interactions. It is not sufficient, therefore, to study single genotypes alone; we need a systems biology of cell groups. Towards this aim, we combine the theories of social evolution and collective behaviour with the empirical study of microbes in two main approaches. The first focuses on the effects of mutation-driven diversity on a key bacterial trait - polymer secretion - that is central to bacterial life. The second approach focuses on the genetic diversity that arises when strains and species mix together. Here, we are developing a set of assays to investigate the effects of strain and species mixing centred upon Pseudomonas aeruginosa; a pathogenic bacterium that forms biofilms in the cystic fibrosis lung. We combine biofilm assays with transcriptomics to characterize the mechanisms that allow P. aeruginosa to invade environments containing benign species that might otherwise afford protection to a host. By taking a stepwise strategy that systematically adds back components of the physical and social environment, we aim to break down the daunting complexity of natural microbe communities. The ultimate goal is to build a predictive framework that goes from the mechanisms of social interaction among cells up to the emergent properties of natural communities.
Max ERC Funding
1 750 000 €
Duration
Start date: 2010-10-01, End date: 2016-09-30
Project acronym INVFEST
Project Evolutionary and functional analysis of polymorphic inversions in the human genome
Researcher (PI) Mario Cáceres
Host Institution (HI) UNIVERSIDAD AUTONOMA DE BARCELONA
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary The last years have seen an extraordinary explosion of studies characterizing genome variation at different levels, and have opened new opportunities in deciphering the genetic basis of phenotypic characteristics and the evolutionary forces involved. One of the major breakthroughs has been the discovery of an unprecedented degree of structural variation in the human genome, including deletions, duplications and inversions. However, the main challenge is to understand the biological significance of these genomic changes. In particular, for many years inversions have been the paradigm of evolutionary biology. Thus, the identification of the whole set of human inversions gives us a unique opportunity to investigate the functional and evolutionary consequences of this type of changes at a large scale. The specific objectives of the project are: (1) Catalogue the precise location of all common polymorphic inversions in the human genome; (2) Determine the population distribution and the evolutionary history of these inversions; (3) Investigate the functional consequences and the effects on gene expression of human inversions; and (4) Assess the effect of inversions on nucleotide variation patterns and the role of natural selection in their maintenance. This project will follow a multidisciplinary approach that combines experimental and bioinformatic analyses and will benefit from the great amount of information on the human genome already available and that will be generated in the next months. The proposed research therefore represents a very appropriate and timely contribution to the study of human structural variation and its role in phenotypic variation and evolution. Furthermore, it will provide additional insights on genome function, gene-expression regulation mechanisms, and the association of genetic changes and particular traits, and promises to stir novel hypothesis for future studies.
Summary
The last years have seen an extraordinary explosion of studies characterizing genome variation at different levels, and have opened new opportunities in deciphering the genetic basis of phenotypic characteristics and the evolutionary forces involved. One of the major breakthroughs has been the discovery of an unprecedented degree of structural variation in the human genome, including deletions, duplications and inversions. However, the main challenge is to understand the biological significance of these genomic changes. In particular, for many years inversions have been the paradigm of evolutionary biology. Thus, the identification of the whole set of human inversions gives us a unique opportunity to investigate the functional and evolutionary consequences of this type of changes at a large scale. The specific objectives of the project are: (1) Catalogue the precise location of all common polymorphic inversions in the human genome; (2) Determine the population distribution and the evolutionary history of these inversions; (3) Investigate the functional consequences and the effects on gene expression of human inversions; and (4) Assess the effect of inversions on nucleotide variation patterns and the role of natural selection in their maintenance. This project will follow a multidisciplinary approach that combines experimental and bioinformatic analyses and will benefit from the great amount of information on the human genome already available and that will be generated in the next months. The proposed research therefore represents a very appropriate and timely contribution to the study of human structural variation and its role in phenotypic variation and evolution. Furthermore, it will provide additional insights on genome function, gene-expression regulation mechanisms, and the association of genetic changes and particular traits, and promises to stir novel hypothesis for future studies.
Max ERC Funding
1 475 377 €
Duration
Start date: 2010-02-01, End date: 2015-10-31