Project acronym BrainBIT
Project All-optical brain-to-brain behaviour and information transfer
Researcher (PI) Francesco PAVONE
Host Institution (HI) UNIVERSITA DEGLI STUDI DI FIRENZE
Country Italy
Call Details Advanced Grant (AdG), PE2, ERC-2015-AdG
Summary Exchange of information between different brains usually takes place through the interaction between bodies and the external environment. The ultimate goal of this project is to establish a novel paradigm of brain-to-brain communication based on direct full-optical recording and controlled stimulation of neuronal activity in different subjects. To pursue this challenging objective, we propose to develop optical technologies well beyond the state of the art for simultaneous neuronal “reading” and “writing” across large volumes and with high spatial and temporal resolution, targeted to the transfer of advantageous behaviour in physiological and pathological conditions.
We will perform whole-brain high-resolution imaging in zebrafish larvae to disentangle the activity patterns related to different tasks. We will then use these patterns as stimulation templates in other larvae to investigate spatio-temporal subject-invariant signatures of specific behavioural states. This ‘pump and probe’ strategy will allow gaining deep insights into the complex relationship between neuronal activity and subject behaviour.
To move towards clinics-oriented studies on brain stimulation therapies, we will complement whole-brain experiments in zebrafish with large area functional imaging and optostimulation in mammals. We will investigate all-optical brain-to-brain information transfer to boost an advantageous behaviour, i.e. motor recovery, in a mouse model of stroke. Mice showing more effective responses to rehabilitation will provide neuronal activity templates to be elicited in other animals, in order to increase rehabilitation efficiency.
We strongly believe that the implementation of new technologies for all-optical transfer of behaviour between different subjects will offer unprecedented views of neuronal activity in healthy and injured brain, paving the way to more effective brain stimulation therapies.
Summary
Exchange of information between different brains usually takes place through the interaction between bodies and the external environment. The ultimate goal of this project is to establish a novel paradigm of brain-to-brain communication based on direct full-optical recording and controlled stimulation of neuronal activity in different subjects. To pursue this challenging objective, we propose to develop optical technologies well beyond the state of the art for simultaneous neuronal “reading” and “writing” across large volumes and with high spatial and temporal resolution, targeted to the transfer of advantageous behaviour in physiological and pathological conditions.
We will perform whole-brain high-resolution imaging in zebrafish larvae to disentangle the activity patterns related to different tasks. We will then use these patterns as stimulation templates in other larvae to investigate spatio-temporal subject-invariant signatures of specific behavioural states. This ‘pump and probe’ strategy will allow gaining deep insights into the complex relationship between neuronal activity and subject behaviour.
To move towards clinics-oriented studies on brain stimulation therapies, we will complement whole-brain experiments in zebrafish with large area functional imaging and optostimulation in mammals. We will investigate all-optical brain-to-brain information transfer to boost an advantageous behaviour, i.e. motor recovery, in a mouse model of stroke. Mice showing more effective responses to rehabilitation will provide neuronal activity templates to be elicited in other animals, in order to increase rehabilitation efficiency.
We strongly believe that the implementation of new technologies for all-optical transfer of behaviour between different subjects will offer unprecedented views of neuronal activity in healthy and injured brain, paving the way to more effective brain stimulation therapies.
Max ERC Funding
2 370 250 €
Duration
Start date: 2016-12-01, End date: 2022-05-31
Project acronym CC-TOP
Project Cryosphere-Carbon on Top of the Earth (CC-Top):Decreasing Uncertainties of Thawing Permafrost and Collapsing Methane Hydrates in the Arctic
Researcher (PI) oerjan GUSTAFSSON
Host Institution (HI) STOCKHOLMS UNIVERSITET
Country Sweden
Call Details Advanced Grant (AdG), PE10, ERC-2015-AdG
Summary The enormous quantities of frozen carbon in the Arctic, held in shallow soils and sediments, act as “capacitors” of the global carbon system. Thawing permafrost (PF) and collapsing methane hydrates are top candidates to cause a net transfer of carbon from land/ocean to the atmosphere this century, yet uncertainties abound.
Our program targets the East Siberian Arctic Ocean (ESAO), the World’s largest shelf sea, as it holds 80% of coastal PF, 80% of subsea PF and 75% of shallow hydrates. Our initial findings (e.g., Science, 2010; Nature, 2012; PNAS; 2013; Nature Geoscience, 2013, 2014) are challenging earlier notions by showing complexities in terrestrial PF-Carbon remobilization and extensive venting of methane from subsea PF/hydrates. The objective of the CC-Top Program is to transform descriptive and data-lean pictures into quantitative understanding of the CC system, to pin down the present and predict future releases from these “Sleeping Giants” of the global carbon system.
The CC-Top program combines unique Arctic field capacities with powerful molecular-isotopic characterization of PF-carbon/methane to break through on:
The “awakening” of terrestrial PF-C pools: CC-Top will employ great pan-arctic rivers as natural integrators and by probing the δ13C/Δ14C and molecular fingerprints, apportion release fluxes of different PF-C pools.
The ESAO subsea cryosphere/methane: CC-Top will use recent spatially-extensive observations, deep sediment cores and gap-filling expeditions to (i) estimate distribution of subsea PF and hydrates; (ii) establish thermal state (thawing rate) of subsea PF-C; (iii) apportion sources of releasing methane btw subsea-PF, shallow hydrates vs seepage from the deep petroleum megapool using source-diagnostic triple-isotope fingerprinting.
Arctic Ocean slope hydrates: CC-Top will investigate sites (discovered by us 2008-2014) of collapsed hydrates venting methane, to characterize geospatial distribution and causes of destabilization.
Summary
The enormous quantities of frozen carbon in the Arctic, held in shallow soils and sediments, act as “capacitors” of the global carbon system. Thawing permafrost (PF) and collapsing methane hydrates are top candidates to cause a net transfer of carbon from land/ocean to the atmosphere this century, yet uncertainties abound.
Our program targets the East Siberian Arctic Ocean (ESAO), the World’s largest shelf sea, as it holds 80% of coastal PF, 80% of subsea PF and 75% of shallow hydrates. Our initial findings (e.g., Science, 2010; Nature, 2012; PNAS; 2013; Nature Geoscience, 2013, 2014) are challenging earlier notions by showing complexities in terrestrial PF-Carbon remobilization and extensive venting of methane from subsea PF/hydrates. The objective of the CC-Top Program is to transform descriptive and data-lean pictures into quantitative understanding of the CC system, to pin down the present and predict future releases from these “Sleeping Giants” of the global carbon system.
The CC-Top program combines unique Arctic field capacities with powerful molecular-isotopic characterization of PF-carbon/methane to break through on:
The “awakening” of terrestrial PF-C pools: CC-Top will employ great pan-arctic rivers as natural integrators and by probing the δ13C/Δ14C and molecular fingerprints, apportion release fluxes of different PF-C pools.
The ESAO subsea cryosphere/methane: CC-Top will use recent spatially-extensive observations, deep sediment cores and gap-filling expeditions to (i) estimate distribution of subsea PF and hydrates; (ii) establish thermal state (thawing rate) of subsea PF-C; (iii) apportion sources of releasing methane btw subsea-PF, shallow hydrates vs seepage from the deep petroleum megapool using source-diagnostic triple-isotope fingerprinting.
Arctic Ocean slope hydrates: CC-Top will investigate sites (discovered by us 2008-2014) of collapsed hydrates venting methane, to characterize geospatial distribution and causes of destabilization.
Max ERC Funding
2 499 756 €
Duration
Start date: 2016-11-01, End date: 2021-10-31
Project acronym EYEGET
Project Gene therapy of inherited retinal diseases
Researcher (PI) Alberto AURICCHIO
Host Institution (HI) FONDAZIONE TELETHON
Country Italy
Call Details Advanced Grant (AdG), LS7, ERC-2015-AdG
Summary Inherited retinal degenerations (IRDs) are a major cause of blindness worldwide. IRD patients witness inexorable progressive vision loss as no therapy is currently available. In the last decade my group has significantly contributed to a change of this scenario by developing efficient adeno-associated viral (AAV) vectors for retinal gene therapy that are safe and effective in humans. The objective of EYEGET (EYE GEne Therapy) is to overcome some of the current major limitations in the field of retinal gene therapy to expand initial therapeutic successes to a larger number of IRDs. To achieve this, we propose to use four parallel, highly innovative and complementary approaches: i. expansion of the limited AAV cargo capacity by a novel methodology based on co-administration of multiple AAVs that reassemble in target retinal cells and reconstitute large genes; ii. targeting of frequent dominant gain-of-function mutations that cause RP using state-of-the-art AAV-mediated genome editing technologies; iii. induction of retinal cells clearance of toxic IRD products by AAV-mediated activation of autophagy and lysosomal function; iv. development of methodologies to directly convert fibroblasts to photoreceptors that can be transplanted in retinas from IRD patients with advanced PR loss and for whom in vivo gene therapy is no longer an option. We will use a combination of in vitro and in vivo state-of-the-art technologies including novel AAV vector design, high content screening of drugs that enhance AAV transduction, genome editing, and advanced in vivo retinal phenotyping to obtain proof-of-concept for each of these therapeutic strategies. The results from this study may impact the quality of life of millions of people worldwide by providing a cure based on gene and/or cell therapy for a large group of IRDs.
Summary
Inherited retinal degenerations (IRDs) are a major cause of blindness worldwide. IRD patients witness inexorable progressive vision loss as no therapy is currently available. In the last decade my group has significantly contributed to a change of this scenario by developing efficient adeno-associated viral (AAV) vectors for retinal gene therapy that are safe and effective in humans. The objective of EYEGET (EYE GEne Therapy) is to overcome some of the current major limitations in the field of retinal gene therapy to expand initial therapeutic successes to a larger number of IRDs. To achieve this, we propose to use four parallel, highly innovative and complementary approaches: i. expansion of the limited AAV cargo capacity by a novel methodology based on co-administration of multiple AAVs that reassemble in target retinal cells and reconstitute large genes; ii. targeting of frequent dominant gain-of-function mutations that cause RP using state-of-the-art AAV-mediated genome editing technologies; iii. induction of retinal cells clearance of toxic IRD products by AAV-mediated activation of autophagy and lysosomal function; iv. development of methodologies to directly convert fibroblasts to photoreceptors that can be transplanted in retinas from IRD patients with advanced PR loss and for whom in vivo gene therapy is no longer an option. We will use a combination of in vitro and in vivo state-of-the-art technologies including novel AAV vector design, high content screening of drugs that enhance AAV transduction, genome editing, and advanced in vivo retinal phenotyping to obtain proof-of-concept for each of these therapeutic strategies. The results from this study may impact the quality of life of millions of people worldwide by providing a cure based on gene and/or cell therapy for a large group of IRDs.
Max ERC Funding
2 499 564 €
Duration
Start date: 2017-01-01, End date: 2022-12-31
Project acronym GeCo
Project Data-Driven Genomic Computing
Researcher (PI) stefano CERI
Host Institution (HI) POLITECNICO DI MILANO
Country Italy
Call Details Advanced Grant (AdG), PE6, ERC-2015-AdG
Summary Next-generation sequencing technology has dramatically reduced the cost and time of reading the DNA. Huge investments are targeted to sequencing the DNA of large populations, and repositories of well-curated sequence data are being collected. Answers to fundamental biomedical problems are hidden in these data, e.g. how cancer arises, how driving mutations occur, how much cancer is dependent on environment. But genomic computing has not comparatively evolved. Bioinformatics has been driven by specific needs and distracted from a foundational approach; hundreds of methods solve individual problems, but miss the broad perspective.
The objective of GeCo is to rethink genomic computing through the lens of basic data management. We will first design the data model, using few general abstractions that guarantee interoperability between existing data formats. Next, we will design a new-generation query language inspired by classic relational algebra and extended with orthogonal, domain-specific abstractions for genomics. Query processing will trace metadata and computation steps, opening doors to the seamless integration of descriptive statistics and high-level data analysis (e.g., DNA region clustering and extraction of regulatory networks).
Genomic computing is a “big data” problem, therefore we will also achieve computational efficiency by using parallel computing on both clusters and public clouds; the choice of a suitable data model and of computational abstractions will boost performance in a principled way. The resulting technology will be applicable to individual and federated repositories, and will be exploited for providing integrated access to curated data, made available by large consortia, through user-friendly search services. Our most far-fetching vision is to move towards an Internet of Genomes exploiting data indexing and crawling. The PI’s background in distributed data, data modelling, query processing and search will drive a radical paradigm shift.
Summary
Next-generation sequencing technology has dramatically reduced the cost and time of reading the DNA. Huge investments are targeted to sequencing the DNA of large populations, and repositories of well-curated sequence data are being collected. Answers to fundamental biomedical problems are hidden in these data, e.g. how cancer arises, how driving mutations occur, how much cancer is dependent on environment. But genomic computing has not comparatively evolved. Bioinformatics has been driven by specific needs and distracted from a foundational approach; hundreds of methods solve individual problems, but miss the broad perspective.
The objective of GeCo is to rethink genomic computing through the lens of basic data management. We will first design the data model, using few general abstractions that guarantee interoperability between existing data formats. Next, we will design a new-generation query language inspired by classic relational algebra and extended with orthogonal, domain-specific abstractions for genomics. Query processing will trace metadata and computation steps, opening doors to the seamless integration of descriptive statistics and high-level data analysis (e.g., DNA region clustering and extraction of regulatory networks).
Genomic computing is a “big data” problem, therefore we will also achieve computational efficiency by using parallel computing on both clusters and public clouds; the choice of a suitable data model and of computational abstractions will boost performance in a principled way. The resulting technology will be applicable to individual and federated repositories, and will be exploited for providing integrated access to curated data, made available by large consortia, through user-friendly search services. Our most far-fetching vision is to move towards an Internet of Genomes exploiting data indexing and crawling. The PI’s background in distributed data, data modelling, query processing and search will drive a radical paradigm shift.
Max ERC Funding
2 500 000 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym IMMUNOALZHEIMER
Project The role of immune cells in Alzheimer's disease
Researcher (PI) Gabriela CONSTANTIN
Host Institution (HI) UNIVERSITA DEGLI STUDI DI VERONA
Country Italy
Call Details Advanced Grant (AdG), LS6, ERC-2015-AdG
Summary "Alzheimer’s disease is the most common form of dementia affecting more than 35 million people worldwide and its prevalence is projected to nearly double every 20 years with tremendous social and economical impact on the society. There is no cure for Alzheimer's disease and current drugs only temporarily improve disease symptoms.
Alzheimer's disease is characterized by a progressive deterioration of cognitive functions, and the neuropathological features include amyloid beta deposition, aggregates of hyperphosphorylated tau protein, and the loss of neurons in the central nervous system (CNS). Research efforts in the past decades have been focused on neurons and other CNS resident cells, but this "neurocentric" view has not resulted in disease-modifying therapies.
Growing evidence suggests that inflammation mechanisms are involved in Alzheimer's disease and our team has recently shown an unexpected role for neutrophils in Alzheimer's disease, supporting the innovative idea that circulating leukocytes contribute to disease pathogenesis.
The main goal of this project is to study the role of immune cells in animal models of Alzheimer's disease focusing on neutrophils and T cells. We will first study leukocyte-endothelial interactions in CNS microcirculation in intravital microscopy experiments. Leukocyte trafficking will be then studied inside the brain parenchyma by using two-photon microscopy, which will allow us to characterize leukocyte dynamic behaviour and the crosstalk between migrating leukocytes and CNS cells. The effect of therapeutic blockade of leukocyte-dependent inflammation mechanisms will be determined in animal models of Alzheimer's disease. Finally, the presence of immune cells will be studied on brain samples from Alzheimer's disease patients. Overall, IMMUNOALZHEIMER will generate fundamental knowledge to the understanding of the role of immune cells in neurodegeneration and will unveil novel therapeutic strategies to address Alzheimer’s disease."
Summary
"Alzheimer’s disease is the most common form of dementia affecting more than 35 million people worldwide and its prevalence is projected to nearly double every 20 years with tremendous social and economical impact on the society. There is no cure for Alzheimer's disease and current drugs only temporarily improve disease symptoms.
Alzheimer's disease is characterized by a progressive deterioration of cognitive functions, and the neuropathological features include amyloid beta deposition, aggregates of hyperphosphorylated tau protein, and the loss of neurons in the central nervous system (CNS). Research efforts in the past decades have been focused on neurons and other CNS resident cells, but this "neurocentric" view has not resulted in disease-modifying therapies.
Growing evidence suggests that inflammation mechanisms are involved in Alzheimer's disease and our team has recently shown an unexpected role for neutrophils in Alzheimer's disease, supporting the innovative idea that circulating leukocytes contribute to disease pathogenesis.
The main goal of this project is to study the role of immune cells in animal models of Alzheimer's disease focusing on neutrophils and T cells. We will first study leukocyte-endothelial interactions in CNS microcirculation in intravital microscopy experiments. Leukocyte trafficking will be then studied inside the brain parenchyma by using two-photon microscopy, which will allow us to characterize leukocyte dynamic behaviour and the crosstalk between migrating leukocytes and CNS cells. The effect of therapeutic blockade of leukocyte-dependent inflammation mechanisms will be determined in animal models of Alzheimer's disease. Finally, the presence of immune cells will be studied on brain samples from Alzheimer's disease patients. Overall, IMMUNOALZHEIMER will generate fundamental knowledge to the understanding of the role of immune cells in neurodegeneration and will unveil novel therapeutic strategies to address Alzheimer’s disease."
Max ERC Funding
2 500 000 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym INTENT
Project Structured Reactors with INTensified ENergy Transfer for Breakthrough Catalytic Technologies
Researcher (PI) Enrico TRONCONI
Host Institution (HI) POLITECNICO DI MILANO
Country Italy
Call Details Advanced Grant (AdG), PE8, ERC-2015-AdG
Summary Critically important heterogeneous catalytic reactions for energy conversion and chemicals production have been run for several decades in fixed bed reactors randomly packed with catalyst pellets, whose operation is intrinsically limited by slow heat removal/supply. There is urgent need for a new generation of process equipment and chemical reactors to address the current quest for process intensification. I propose that a game-changing alternative is provided by structured reactors wherein the catalyst is washcoated onto or packed into structured substrates, like honeycomb monoliths, open-cell foams or other cellular materials, fabricated with highly conductive metallic (Al, Cu) materials. The goal of this project is to fully elucidate fundamental and engineering properties of such novel conductive structured catalysts, investigate new concepts for their design, manufacturing, catalytic activation and operation (e.g. 3D printing, packed foams, energy supply by solar irradiation), and demonstrate their potential for a quantum leap in the intensification of three crucial catalytic processes for the production of energy vectors: i) distributed H2 generation via efficient small-size reformers; ii) conversion of syngas to clean synthetic fuels in compact (e.g. skid-mounted) reactors; iii) production of solar H2. To this purpose I will combine advanced CFD modelling with lab-scale experimentation in order to identify the optimal structure-performance relation of existing and novel substrates, use such new knowledge to design optimized prototypes, apply unconventional additive manufacturing technologies for their production, and construct a semi-industrial tubular pilot reactor to test them at a representative scale. The project results will enable novel reactor designs based on tuning geometry, materials and configurations of the conductive internals to match the activity - selectivity demands of specific process applications, while impacting also other research areas.
Summary
Critically important heterogeneous catalytic reactions for energy conversion and chemicals production have been run for several decades in fixed bed reactors randomly packed with catalyst pellets, whose operation is intrinsically limited by slow heat removal/supply. There is urgent need for a new generation of process equipment and chemical reactors to address the current quest for process intensification. I propose that a game-changing alternative is provided by structured reactors wherein the catalyst is washcoated onto or packed into structured substrates, like honeycomb monoliths, open-cell foams or other cellular materials, fabricated with highly conductive metallic (Al, Cu) materials. The goal of this project is to fully elucidate fundamental and engineering properties of such novel conductive structured catalysts, investigate new concepts for their design, manufacturing, catalytic activation and operation (e.g. 3D printing, packed foams, energy supply by solar irradiation), and demonstrate their potential for a quantum leap in the intensification of three crucial catalytic processes for the production of energy vectors: i) distributed H2 generation via efficient small-size reformers; ii) conversion of syngas to clean synthetic fuels in compact (e.g. skid-mounted) reactors; iii) production of solar H2. To this purpose I will combine advanced CFD modelling with lab-scale experimentation in order to identify the optimal structure-performance relation of existing and novel substrates, use such new knowledge to design optimized prototypes, apply unconventional additive manufacturing technologies for their production, and construct a semi-industrial tubular pilot reactor to test them at a representative scale. The project results will enable novel reactor designs based on tuning geometry, materials and configurations of the conductive internals to match the activity - selectivity demands of specific process applications, while impacting also other research areas.
Max ERC Funding
2 484 648 €
Duration
Start date: 2016-11-01, End date: 2022-04-30
Project acronym LEAPS
Project Light effected autonomous molecular pumps: Towards active transporters and actuating materials
Researcher (PI) Alberto Credi
Host Institution (HI) ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Country Italy
Call Details Advanced Grant (AdG), PE5, ERC-2015-AdG
Summary The crucial role played by molecular motors in major biological processes gives a clue on the potential of these nanoscale devices for technology. Their exploitation depends on our ability to build working and robust artificial systems, and to interface them with their environment or other molecular constructs for using the motion to carry out tasks.
The goal of this project is to develop the first synthetic photochemical supramolecular pumps and to apply them for performing nanoscale transport functions and macroscopic actuation. The motor modules, which rely on a functioning and affordable minimalist design based on first principles and threaded topologies, operate autonomously away from equilibrium by using light as a clean energy source, can be switched on/off chemically, and are easy to make and functionalize. Appropriately designed motors will be embedded in the bilayer of vesicles to pump molecules across physically separated places, thereby photogenerating concentration gradients. In parallel we plan to arrange the pump modules in oligomeric tracks and investigate the autonomous, directional and processive displacement of a molecule over a few nm. These linear motors will be equipped with a cargo that can be loaded/unloaded with control, yielding the first man-made molecular transporters. Finally, we will integrate the pump components in polymeric scaffolds such that the photoinduced operation of the motors produces a non-equilibrium entanglement of the polymer chains, that can be eventually unravelled by chemical stimulation. Such materials may be used to convert, store, and reuse the energy of (sun)light upon demand.
All the above functionalities are unprecedented for wholly synthetic chemical structures. Their demonstration would be a landmark result in supramolecular chemistry and nanoscience, and open up radically new directions for nanotechnology, nanomedicine, and energy conversion.
Summary
The crucial role played by molecular motors in major biological processes gives a clue on the potential of these nanoscale devices for technology. Their exploitation depends on our ability to build working and robust artificial systems, and to interface them with their environment or other molecular constructs for using the motion to carry out tasks.
The goal of this project is to develop the first synthetic photochemical supramolecular pumps and to apply them for performing nanoscale transport functions and macroscopic actuation. The motor modules, which rely on a functioning and affordable minimalist design based on first principles and threaded topologies, operate autonomously away from equilibrium by using light as a clean energy source, can be switched on/off chemically, and are easy to make and functionalize. Appropriately designed motors will be embedded in the bilayer of vesicles to pump molecules across physically separated places, thereby photogenerating concentration gradients. In parallel we plan to arrange the pump modules in oligomeric tracks and investigate the autonomous, directional and processive displacement of a molecule over a few nm. These linear motors will be equipped with a cargo that can be loaded/unloaded with control, yielding the first man-made molecular transporters. Finally, we will integrate the pump components in polymeric scaffolds such that the photoinduced operation of the motors produces a non-equilibrium entanglement of the polymer chains, that can be eventually unravelled by chemical stimulation. Such materials may be used to convert, store, and reuse the energy of (sun)light upon demand.
All the above functionalities are unprecedented for wholly synthetic chemical structures. Their demonstration would be a landmark result in supramolecular chemistry and nanoscience, and open up radically new directions for nanotechnology, nanomedicine, and energy conversion.
Max ERC Funding
2 362 950 €
Duration
Start date: 2016-10-01, End date: 2022-09-30
Project acronym LocomotorIntegration
Project Functional connectome of brainstem circuits that control locomotion
Researcher (PI) Ole Kiehn
Host Institution (HI) KAROLINSKA INSTITUTET
Country Sweden
Call Details Advanced Grant (AdG), LS5, ERC-2015-AdG
Summary Locomotion is a complex motor act that is used in many daily life activities and is the output measures of a plethora of brain behaviors. The planning and initiation of locomotion take place in the brain and brainstem, while the execution is accomplished by activity in neuronal networks in the spinal cord itself. Recent experiments have provided significant insight to the organization of the executive spinal locomotor networks. However, little is known about the brainstem control of these networks. Here, I propose to provide a unified understanding of the functional connectome of the key brainstem networks that control locomotion in mammals needed to select appropriate locomotor outputs. To obtain these goals we will develop a suite of transgenic mouse models with optogenetic or chemogenetic switches in defined populations of brainstem neurons combined with the possibility to use state-of-the-art cell-specific electrophysiological and anatomical connectivity studies. We will reveal the functional organization of ‘go’ and ‘stop’ command systems in the brainstem that are directly upstream from the spinal locomotor networks and the mechanisms for how spinal networks are selected. We will further functionally deconstruct the next network layer in midbrain structures that control the ‘go’ and ‘stop’ command systems. Our research takes a specific approach to provide mechanistic insight to the integrated movement function by building the motor matrix in a functional chain from the locomotor–related spinal cord neurons that have been identified to midbrain neurons. A segment of our research will link these networks to locomotor impairments after basal ganglia dysfunction. The work has the potential to make a breakthrough in our understanding of how complex movements are generated by the brain and has translational implications for patients with movement disorders. It will push boundaries in the universal effort that aims to comprehend how brain networks create behaviors.
Summary
Locomotion is a complex motor act that is used in many daily life activities and is the output measures of a plethora of brain behaviors. The planning and initiation of locomotion take place in the brain and brainstem, while the execution is accomplished by activity in neuronal networks in the spinal cord itself. Recent experiments have provided significant insight to the organization of the executive spinal locomotor networks. However, little is known about the brainstem control of these networks. Here, I propose to provide a unified understanding of the functional connectome of the key brainstem networks that control locomotion in mammals needed to select appropriate locomotor outputs. To obtain these goals we will develop a suite of transgenic mouse models with optogenetic or chemogenetic switches in defined populations of brainstem neurons combined with the possibility to use state-of-the-art cell-specific electrophysiological and anatomical connectivity studies. We will reveal the functional organization of ‘go’ and ‘stop’ command systems in the brainstem that are directly upstream from the spinal locomotor networks and the mechanisms for how spinal networks are selected. We will further functionally deconstruct the next network layer in midbrain structures that control the ‘go’ and ‘stop’ command systems. Our research takes a specific approach to provide mechanistic insight to the integrated movement function by building the motor matrix in a functional chain from the locomotor–related spinal cord neurons that have been identified to midbrain neurons. A segment of our research will link these networks to locomotor impairments after basal ganglia dysfunction. The work has the potential to make a breakthrough in our understanding of how complex movements are generated by the brain and has translational implications for patients with movement disorders. It will push boundaries in the universal effort that aims to comprehend how brain networks create behaviors.
Max ERC Funding
2 500 000 €
Duration
Start date: 2016-08-01, End date: 2021-07-31
Project acronym LoTGlasSy
Project Low Temperature Glassy Systems
Researcher (PI) Giorgio Parisi
Host Institution (HI) UNIVERSITA DEGLI STUDI DI ROMA LA SAPIENZA
Country Italy
Call Details Advanced Grant (AdG), PE2, ERC-2015-AdG
Summary Jamming of hard spheres is a new critical phenomenon whose exponents are different from those of the other known transitions. These exponents have been recently computed in a mean field approximation whose limits of validity are not known. Even if their values are in very good agreement with the ones obtained by accurate numerical simulations, the deep reasons for this success are not understood.
Trampolining from these results I plan to develop a theory of the large scale properties of the free energy landscape of glasses at low temperature. I will use techniques of statistical field theory and of renormalization group to identify and compute universal features. This proposal has the following goals.
• We will develop a complete analytic theory of the infinite pressure limit (jamming) of hard spheres in dimensions greater than the upper critical dimensions. We will first compute analytically the upper critical dimension. Numerical simulations suggest that the upper critical dimensions is equal to or smaller than 2: this result is puzzling and it would be very interesting to find out if this indication is supported by the theory. We will also investigate in detail the scaling properties and the conformal invariance of the correlation functions.
• Starting from these results we will derive universal properties of glassy materials in the low temperature regions in the classical and in the quantum regime. The properties of multiple equilibrium configurations are crucial; we will study the structure of small (localized or extended) oscillations around them, the classical and quantum tunneling barriers.
• We will analyze both equilibrium features and off-equilibrium features (like plasticity and the time dependence of the specific heat). The subject has been widely discussed and phenomenological laws have been derived. I aim to obtain these laws from first principles using the properties of the free energy landscape in glasses that will be derived analytically.
Summary
Jamming of hard spheres is a new critical phenomenon whose exponents are different from those of the other known transitions. These exponents have been recently computed in a mean field approximation whose limits of validity are not known. Even if their values are in very good agreement with the ones obtained by accurate numerical simulations, the deep reasons for this success are not understood.
Trampolining from these results I plan to develop a theory of the large scale properties of the free energy landscape of glasses at low temperature. I will use techniques of statistical field theory and of renormalization group to identify and compute universal features. This proposal has the following goals.
• We will develop a complete analytic theory of the infinite pressure limit (jamming) of hard spheres in dimensions greater than the upper critical dimensions. We will first compute analytically the upper critical dimension. Numerical simulations suggest that the upper critical dimensions is equal to or smaller than 2: this result is puzzling and it would be very interesting to find out if this indication is supported by the theory. We will also investigate in detail the scaling properties and the conformal invariance of the correlation functions.
• Starting from these results we will derive universal properties of glassy materials in the low temperature regions in the classical and in the quantum regime. The properties of multiple equilibrium configurations are crucial; we will study the structure of small (localized or extended) oscillations around them, the classical and quantum tunneling barriers.
• We will analyze both equilibrium features and off-equilibrium features (like plasticity and the time dependence of the specific heat). The subject has been widely discussed and phenomenological laws have been derived. I aim to obtain these laws from first principles using the properties of the free energy landscape in glasses that will be derived analytically.
Max ERC Funding
1 760 000 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym LYSOSOMICS
Project Functional Genomics of the Lysosome
Researcher (PI) Andrea BALLABIO
Host Institution (HI) FONDAZIONE TELETHON
Country Italy
Call Details Advanced Grant (AdG), LS2, ERC-2015-AdG
Summary For a long time the lysosome has been viewed as a “static” organelle that performs “routine” work for the cell, mostly pertaining to degradation and recycling of cellular waste. My group has challenged this view and used a systems biology approach to discover that the lysosome is subject to a global transcriptional regulation, is able to adapt to environmental clues, and acts as a signalling hub to regulate cell homeostasis. Furthermore, an emerging role of the lysosome has been identified in many types of diseases, including the common neurodegenerative disorders Parkinson's and Alzheimer’s. These findings have opened entirely new fields of investigation on lysosomal biology, suggesting that there is a lot to be learned on the role of the lysosome in health and disease. The goal of LYSOSOMICS is to use “omics” approaches to study lysosomal function and its regulation in normal and pathological conditions. In this “organellar systems biology project” we plan to perform several types of genetic perturbations in three widely used cell lines and study their effects on lysosomal function using a set of newly developed cellular phenotypic assays. Moreover, we plan to identify lysosomal protein-protein interactions using a novel High Content FRET-based approach. Finally, we will use the CRISPR-Cas9 technology to generate a collection of cellular models for all lysosomal storage diseases, a group of severe inherited diseases often associated with early onset neurodegeneration. State-of-the-art computational approaches will be used to predict gene function and identify disease mechanisms potentially exploitable for therapeutic purposes. The physiological relevance of newly identified pathways will be validated by in vivo studies performed on selected genes by using medaka and mice as model systems. This study will allow us to gain a comprehensive understanding of lysosomal function and dysfunction and to use this knowledge to develop new therapeutic strategies.
Summary
For a long time the lysosome has been viewed as a “static” organelle that performs “routine” work for the cell, mostly pertaining to degradation and recycling of cellular waste. My group has challenged this view and used a systems biology approach to discover that the lysosome is subject to a global transcriptional regulation, is able to adapt to environmental clues, and acts as a signalling hub to regulate cell homeostasis. Furthermore, an emerging role of the lysosome has been identified in many types of diseases, including the common neurodegenerative disorders Parkinson's and Alzheimer’s. These findings have opened entirely new fields of investigation on lysosomal biology, suggesting that there is a lot to be learned on the role of the lysosome in health and disease. The goal of LYSOSOMICS is to use “omics” approaches to study lysosomal function and its regulation in normal and pathological conditions. In this “organellar systems biology project” we plan to perform several types of genetic perturbations in three widely used cell lines and study their effects on lysosomal function using a set of newly developed cellular phenotypic assays. Moreover, we plan to identify lysosomal protein-protein interactions using a novel High Content FRET-based approach. Finally, we will use the CRISPR-Cas9 technology to generate a collection of cellular models for all lysosomal storage diseases, a group of severe inherited diseases often associated with early onset neurodegeneration. State-of-the-art computational approaches will be used to predict gene function and identify disease mechanisms potentially exploitable for therapeutic purposes. The physiological relevance of newly identified pathways will be validated by in vivo studies performed on selected genes by using medaka and mice as model systems. This study will allow us to gain a comprehensive understanding of lysosomal function and dysfunction and to use this knowledge to develop new therapeutic strategies.
Max ERC Funding
2 362 563 €
Duration
Start date: 2016-10-01, End date: 2022-03-31