Project acronym AROMA-CFD
Project Advanced Reduced Order Methods with Applications in Computational Fluid Dynamics
Researcher (PI) Gianluigi Rozza
Host Institution (HI) SCUOLA INTERNAZIONALE SUPERIORE DI STUDI AVANZATI DI TRIESTE
Country Italy
Call Details Consolidator Grant (CoG), PE1, ERC-2015-CoG
Summary The aim of AROMA-CFD is to create a team of scientists at SISSA for the development of Advanced Reduced Order Modelling techniques with a focus in Computational Fluid Dynamics (CFD), in order to face and overcome many current limitations of the state of the art and improve the capabilities of reduced order methodologies for more demanding applications in industrial, medical and applied sciences contexts. AROMA-CFD deals with strong methodological developments in numerical analysis, with a special emphasis on mathematical modelling and extensive exploitation of computational science and engineering. Several tasks have been identified to tackle important problems and open questions in reduced order modelling: study of bifurcations and instabilities in flows, increasing Reynolds number and guaranteeing stability, moving towards turbulent flows, considering complex geometrical parametrizations of shapes as computational domains into extended networks. A reduced computational and geometrical framework will be developed for nonlinear inverse problems, focusing on optimal flow control, shape optimization and uncertainty quantification. Further, all the advanced developments in reduced order modelling for CFD will be delivered for applications in multiphysics, such as fluid-structure interaction problems and general coupled phenomena involving inviscid, viscous and thermal flows, solids and porous media. The advanced developed framework within AROMA-CFD will provide attractive capabilities for several industrial and medical applications (e.g. aeronautical, mechanical, naval, off-shore, wind, sport, biomedical engineering, and cardiovascular surgery as well), combining high performance computing (in dedicated supercomputing centers) and advanced reduced order modelling (in common devices) to guarantee real time computing and visualization. A new open source software library for AROMA-CFD will be created: ITHACA, In real Time Highly Advanced Computational Applications.
Summary
The aim of AROMA-CFD is to create a team of scientists at SISSA for the development of Advanced Reduced Order Modelling techniques with a focus in Computational Fluid Dynamics (CFD), in order to face and overcome many current limitations of the state of the art and improve the capabilities of reduced order methodologies for more demanding applications in industrial, medical and applied sciences contexts. AROMA-CFD deals with strong methodological developments in numerical analysis, with a special emphasis on mathematical modelling and extensive exploitation of computational science and engineering. Several tasks have been identified to tackle important problems and open questions in reduced order modelling: study of bifurcations and instabilities in flows, increasing Reynolds number and guaranteeing stability, moving towards turbulent flows, considering complex geometrical parametrizations of shapes as computational domains into extended networks. A reduced computational and geometrical framework will be developed for nonlinear inverse problems, focusing on optimal flow control, shape optimization and uncertainty quantification. Further, all the advanced developments in reduced order modelling for CFD will be delivered for applications in multiphysics, such as fluid-structure interaction problems and general coupled phenomena involving inviscid, viscous and thermal flows, solids and porous media. The advanced developed framework within AROMA-CFD will provide attractive capabilities for several industrial and medical applications (e.g. aeronautical, mechanical, naval, off-shore, wind, sport, biomedical engineering, and cardiovascular surgery as well), combining high performance computing (in dedicated supercomputing centers) and advanced reduced order modelling (in common devices) to guarantee real time computing and visualization. A new open source software library for AROMA-CFD will be created: ITHACA, In real Time Highly Advanced Computational Applications.
Max ERC Funding
1 656 579 €
Duration
Start date: 2016-05-01, End date: 2021-10-31
Project acronym BOOST
Project Biomimetic trick to re-balance Osteblast-Osteoclast loop in osteoporoSis treatment: a Topological and materials driven approach
Researcher (PI) Chiara Silvia Vitale Brovarone
Host Institution (HI) POLITECNICO DI TORINO
Country Italy
Call Details Consolidator Grant (CoG), PE8, ERC-2015-CoG
Summary One out of 5 people in their fifties will experience a bone fracture due to osteoporosis (OP)-induced fragility in their lifetime. The OP socio-economic burden is dramatic and involves tens of millions of people in the EU, with a steadily increasing number due to population ageing. Current treatments entail drug-therapy coupled with a healthy lifestyle but OP fractures need mechanical fixation to rapidly achieve union: the contribution of biomaterial scientists in this field is still far from taking its expected leading role in cutting-edge research. Bone remodelling is a well-coordinated process of bone resorption by osteoclasts followed by the production of new bone by osteoblasts. This process occurs continuously throughout life in a coupling with a positive balance during growth and negative with ageing, which can result in OP. We believe that an architecture driven stimulation of the osteoclast/osteoblast coupling, with an avant-garde focus on osteoclasts activity, is the key to success in treating unbalanced bone remodelling. We aim to manufacture a scaffold that mimics healthy bone features which will establish a new microenvironment favoring a properly stimulated and active population of osteoclasts and osteoblasts, i.e. a well-balanced bone cooperation. After 5 years we will be able to prove the efficacy of this approach. A benchmark will be set up for OP fracture treatment and for the realization of smart bone substitutes that will be able to locally “trick” aged bone cells stimulating them to act as healthy ones. BOOST results will have an unprecedented impact on the scientific research community, opening a new approach to set up smart, biomimetic strategies to treat aged, unbalanced bone tissues and to reduce OP-associated disabilities and financial burdens.
Summary
One out of 5 people in their fifties will experience a bone fracture due to osteoporosis (OP)-induced fragility in their lifetime. The OP socio-economic burden is dramatic and involves tens of millions of people in the EU, with a steadily increasing number due to population ageing. Current treatments entail drug-therapy coupled with a healthy lifestyle but OP fractures need mechanical fixation to rapidly achieve union: the contribution of biomaterial scientists in this field is still far from taking its expected leading role in cutting-edge research. Bone remodelling is a well-coordinated process of bone resorption by osteoclasts followed by the production of new bone by osteoblasts. This process occurs continuously throughout life in a coupling with a positive balance during growth and negative with ageing, which can result in OP. We believe that an architecture driven stimulation of the osteoclast/osteoblast coupling, with an avant-garde focus on osteoclasts activity, is the key to success in treating unbalanced bone remodelling. We aim to manufacture a scaffold that mimics healthy bone features which will establish a new microenvironment favoring a properly stimulated and active population of osteoclasts and osteoblasts, i.e. a well-balanced bone cooperation. After 5 years we will be able to prove the efficacy of this approach. A benchmark will be set up for OP fracture treatment and for the realization of smart bone substitutes that will be able to locally “trick” aged bone cells stimulating them to act as healthy ones. BOOST results will have an unprecedented impact on the scientific research community, opening a new approach to set up smart, biomimetic strategies to treat aged, unbalanced bone tissues and to reduce OP-associated disabilities and financial burdens.
Max ERC Funding
1 977 500 €
Duration
Start date: 2016-05-01, End date: 2022-06-30
Project acronym CAVE
Project Challenges and Advancements in Virtual Elements
Researcher (PI) Lourenco Beirao da veiga
Host Institution (HI) UNIVERSITA' DEGLI STUDI DI MILANO-BICOCCA
Country Italy
Call Details Consolidator Grant (CoG), PE1, ERC-2015-CoG
Summary The Virtual Element Method (VEM) is a novel technology for the discretization of partial differential equations (PDEs), that shares the same variational background as the Finite Element Method. First but not only, the VEM responds to the strongly increasing interest in using general polyhedral and polygonal meshes in the approximation of PDEs without the limit of using tetrahedral or hexahedral grids. By avoiding the explicit integration of the shape functions that span the discrete space and introducing an innovative construction of the stiffness matrixes, the VEM acquires very interesting properties and advantages with respect to more standard Galerkin methods, yet still keeping the same coding complexity. For instance, the VEM easily allows for polygonal/polyhedral meshes (even non-conforming) with non-convex elements and possibly with curved faces; it allows for discrete spaces of arbitrary C^k regularity on unstructured meshes.
The main scope of the project is to address the recent theoretical challenges posed by VEM and to assess whether this promising technology can achieve a breakthrough in applications. First, the theoretical and computational foundations of VEM will be made stronger. A deeper theoretical insight, supported by a wider numerical experience on benchmark problems, will be developed to gain a better understanding of the method's potentials and set the foundations for more applicative purposes. Second, we will focus our attention on two tough and up-to-date problems of practical interest: large deformation elasticity (where VEM can yield a dramatically more efficient handling of material inclusions, meshing of the domain and grid adaptivity, plus a much stronger robustness with respect to large grid distortions) and the cardiac bidomain model (where VEM can lead to a more accurate domain approximation through MRI data, a flexible refinement/de-refinement procedure along the propagation front, to an exact satisfaction of conservation laws).
Summary
The Virtual Element Method (VEM) is a novel technology for the discretization of partial differential equations (PDEs), that shares the same variational background as the Finite Element Method. First but not only, the VEM responds to the strongly increasing interest in using general polyhedral and polygonal meshes in the approximation of PDEs without the limit of using tetrahedral or hexahedral grids. By avoiding the explicit integration of the shape functions that span the discrete space and introducing an innovative construction of the stiffness matrixes, the VEM acquires very interesting properties and advantages with respect to more standard Galerkin methods, yet still keeping the same coding complexity. For instance, the VEM easily allows for polygonal/polyhedral meshes (even non-conforming) with non-convex elements and possibly with curved faces; it allows for discrete spaces of arbitrary C^k regularity on unstructured meshes.
The main scope of the project is to address the recent theoretical challenges posed by VEM and to assess whether this promising technology can achieve a breakthrough in applications. First, the theoretical and computational foundations of VEM will be made stronger. A deeper theoretical insight, supported by a wider numerical experience on benchmark problems, will be developed to gain a better understanding of the method's potentials and set the foundations for more applicative purposes. Second, we will focus our attention on two tough and up-to-date problems of practical interest: large deformation elasticity (where VEM can yield a dramatically more efficient handling of material inclusions, meshing of the domain and grid adaptivity, plus a much stronger robustness with respect to large grid distortions) and the cardiac bidomain model (where VEM can lead to a more accurate domain approximation through MRI data, a flexible refinement/de-refinement procedure along the propagation front, to an exact satisfaction of conservation laws).
Max ERC Funding
980 634 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym ENUBET
Project Enhanced NeUtrino BEams from kaon Tagging
Researcher (PI) Andrea Longhin
Host Institution (HI) UNIVERSITA DEGLI STUDI DI PADOVA
Country Italy
Call Details Consolidator Grant (CoG), PE2, ERC-2015-CoG
Summary ENUBET has been designed to open a new window of opportunities in accelerator neutrino physics.
The proposed project enables for the first time the measurement of the positrons produced in the decay tunnel of conventional neutrino beams: these particles signal uniquely the generation of an electron neutrino at source.
Neutrino facilities enhanced by the ENUBET technique will have an unprecedented control of the neutrino flux. This will allow to reduce by one order of magnitude the uncertainties on neutrino cross sections: a leap that has been sought after since decades and that is needed to address the challenges of discovering matter-antimatter asymmetries in the leptonic sector.
The apparatus is a highly specialized electromagnetic calorimeter with fast response, sustaining particle rates as high as 0.5 MHz/cm^2, having excellent electron/pion separation capabilities with a reduced number of read-out channels. ENUBET will boost technologies that have been envisaged for high energy colliders to address this new challenge. On the other hand it will operate in a substantially different configuration. The experiment will be performed at the CERN Neutrino Platform, a recently approved facility where innovative neutrino detectors will be developed exploiting dedicated hadron beam-lines from the SPS accelerator. In the first phase of the project, ENUBET will address the challenges of particle identification from extended sources, developing innovative optical readout systems and cost-effective solutions for radiation imaging. This approach is based on cutting-edge technologies for single photon sensitive devices. During the second phase, the detector will be assembled and characterized at CERN with particle beams. Finally, it will be operated in time coincidence with Liquid Argon neutrino detectors, achieving a major step towards the realization of the concept of tagging individual neutrinos both at production and interaction level, on an event-by-event basis.
Summary
ENUBET has been designed to open a new window of opportunities in accelerator neutrino physics.
The proposed project enables for the first time the measurement of the positrons produced in the decay tunnel of conventional neutrino beams: these particles signal uniquely the generation of an electron neutrino at source.
Neutrino facilities enhanced by the ENUBET technique will have an unprecedented control of the neutrino flux. This will allow to reduce by one order of magnitude the uncertainties on neutrino cross sections: a leap that has been sought after since decades and that is needed to address the challenges of discovering matter-antimatter asymmetries in the leptonic sector.
The apparatus is a highly specialized electromagnetic calorimeter with fast response, sustaining particle rates as high as 0.5 MHz/cm^2, having excellent electron/pion separation capabilities with a reduced number of read-out channels. ENUBET will boost technologies that have been envisaged for high energy colliders to address this new challenge. On the other hand it will operate in a substantially different configuration. The experiment will be performed at the CERN Neutrino Platform, a recently approved facility where innovative neutrino detectors will be developed exploiting dedicated hadron beam-lines from the SPS accelerator. In the first phase of the project, ENUBET will address the challenges of particle identification from extended sources, developing innovative optical readout systems and cost-effective solutions for radiation imaging. This approach is based on cutting-edge technologies for single photon sensitive devices. During the second phase, the detector will be assembled and characterized at CERN with particle beams. Finally, it will be operated in time coincidence with Liquid Argon neutrino detectors, achieving a major step towards the realization of the concept of tagging individual neutrinos both at production and interaction level, on an event-by-event basis.
Max ERC Funding
2 000 000 €
Duration
Start date: 2016-06-01, End date: 2022-05-31
Project acronym FricLess
Project A seamless multi-scale model for contact, friction, and solid lubrication
Researcher (PI) Lucia Nicola
Host Institution (HI) UNIVERSITA DEGLI STUDI DI PADOVA
Country Italy
Call Details Consolidator Grant (CoG), PE8, ERC-2015-CoG
Summary Friction and wear are liable for enormous losses in terms of energy and resources in modern society. Costs related to unwanted friction in industrialised countries are estimated to be about 3% of the gross domestic product. Urgency is even greater nowadays as friction between micro-components has become the bottleneck of several applications for which miniaturisation is critical.
Lubrication is a commonly adopted solution to reduce friction. Graphite is a broadly used solid lubricant for large scale applications, while the lubricating properties of a few-layers graphene hold great promise especially for smaller scale applications. At present, our knowledge of the friction and lubrication of rough surfaces is essentially phenomenological. This is because friction is only deceivingly a simple mechanisms, which instead requires understanding of physical phenomena simultaneously acting at different length scales. The change in contact size, which controls the friction stress, depends on nano-scale phenomena such as atomic de-adhesion, sliding, dislocation nucleation in metals, but also on micro- and macro-scale phenomena as (size-dependent) plastic deformation.
The objective of this proposal is to reach an unprecedented understanding of metal friction and lubrication by accounting, for the first time, for all relevant phenomena occurring from the atomic to the macro-scale, and their interplay.
To this end, a seamless concurrent multi-scale model will be developed. The power of this new model lies in its capability of describing three-dimensional bodies with realistic roughness in sliding lubricated contact, with the accuracy of an atomistic simulation.
This research builds towards a complete picture of metal friction and lubrication. The materials chosen for the proposed research are copper and multi-layer graphene. However, the model that will be developed is general and can be used to study different materials, lubricants and environmental conditions.
Summary
Friction and wear are liable for enormous losses in terms of energy and resources in modern society. Costs related to unwanted friction in industrialised countries are estimated to be about 3% of the gross domestic product. Urgency is even greater nowadays as friction between micro-components has become the bottleneck of several applications for which miniaturisation is critical.
Lubrication is a commonly adopted solution to reduce friction. Graphite is a broadly used solid lubricant for large scale applications, while the lubricating properties of a few-layers graphene hold great promise especially for smaller scale applications. At present, our knowledge of the friction and lubrication of rough surfaces is essentially phenomenological. This is because friction is only deceivingly a simple mechanisms, which instead requires understanding of physical phenomena simultaneously acting at different length scales. The change in contact size, which controls the friction stress, depends on nano-scale phenomena such as atomic de-adhesion, sliding, dislocation nucleation in metals, but also on micro- and macro-scale phenomena as (size-dependent) plastic deformation.
The objective of this proposal is to reach an unprecedented understanding of metal friction and lubrication by accounting, for the first time, for all relevant phenomena occurring from the atomic to the macro-scale, and their interplay.
To this end, a seamless concurrent multi-scale model will be developed. The power of this new model lies in its capability of describing three-dimensional bodies with realistic roughness in sliding lubricated contact, with the accuracy of an atomistic simulation.
This research builds towards a complete picture of metal friction and lubrication. The materials chosen for the proposed research are copper and multi-layer graphene. However, the model that will be developed is general and can be used to study different materials, lubricants and environmental conditions.
Max ERC Funding
1 999 985 €
Duration
Start date: 2016-06-01, End date: 2022-11-30
Project acronym MIMIC
Project Modeling microgels: from microscopic design to macroscopic description
Researcher (PI) Emanuela Zaccarelli
Host Institution (HI) CONSIGLIO NAZIONALE DELLE RICERCHE
Country Italy
Call Details Consolidator Grant (CoG), PE3, ERC-2015-CoG
Summary Soft matter provides the ideal playground for exploring physical phenomena that have no counterpart in atomic and molecular systems. A continuous progress in particle synthesis has provided a rich variety of soft, polymeric colloids, which are highly interpenetrable and can reach ultra-dense, jammed states. Such colloids offer exquisite control of material properties through a change in their internal architecture. Among this new generation of soft particles, microgels – colloidal-scale particles individually made by crosslinked polymer networks – have become a favourite model system for their responsive swelling properties and their multitude of applications. Notwithstanding their potentialities, knowledge of their behaviour from a fundamental point of view is still very limited. The present theoretical description is mostly based on simple models, which do not account for the internal, polymeric nature of the particles. Using state-of-the-art computational techniques across all scales (from atomistic to multi-blob coarse-graining), this 5-years work-program will provide an accurate model of both the microgels and of the effective interactions among them. The model will account for
polymer/solvent interactions and for variation of the external control parameters at all densities, up to jamming conditions. In this way, I will develop a unified framework from the design at the molecular level of the individual particle up to the description of the macroscopic properties of the material. At all steps, I will verify my theoretical progress with experimental measurements performed by world-leading collaborators. This proposal will thus bring the current understanding of microgels to a new level: besides rationalizing existing results, it will open the way for new uses and applications of these fascinating systems.
Summary
Soft matter provides the ideal playground for exploring physical phenomena that have no counterpart in atomic and molecular systems. A continuous progress in particle synthesis has provided a rich variety of soft, polymeric colloids, which are highly interpenetrable and can reach ultra-dense, jammed states. Such colloids offer exquisite control of material properties through a change in their internal architecture. Among this new generation of soft particles, microgels – colloidal-scale particles individually made by crosslinked polymer networks – have become a favourite model system for their responsive swelling properties and their multitude of applications. Notwithstanding their potentialities, knowledge of their behaviour from a fundamental point of view is still very limited. The present theoretical description is mostly based on simple models, which do not account for the internal, polymeric nature of the particles. Using state-of-the-art computational techniques across all scales (from atomistic to multi-blob coarse-graining), this 5-years work-program will provide an accurate model of both the microgels and of the effective interactions among them. The model will account for
polymer/solvent interactions and for variation of the external control parameters at all densities, up to jamming conditions. In this way, I will develop a unified framework from the design at the molecular level of the individual particle up to the description of the macroscopic properties of the material. At all steps, I will verify my theoretical progress with experimental measurements performed by world-leading collaborators. This proposal will thus bring the current understanding of microgels to a new level: besides rationalizing existing results, it will open the way for new uses and applications of these fascinating systems.
Max ERC Funding
1 314 375 €
Duration
Start date: 2016-06-01, End date: 2022-01-31
Project acronym NIRV_HOST_INT
Project Population genomics of co-evolution between non-retroviral RNA viruses and their hosts
Researcher (PI) Mariangela Bonizzoni
Host Institution (HI) UNIVERSITA DEGLI STUDI DI PAVIA
Country Italy
Call Details Consolidator Grant (CoG), LS8, ERC-2015-CoG
Summary Recent discoveries clearly show that non-retroviral RNA viruses, despite not coding for reverse transcriptase and integrase, can transfer genetic material to their hosts, similarly to DNA viruses and retroviruses. The distribution of non-retroviral integrated RNA viruses (NIRVs) in host populations, mechanisms of NIRVs formation and effects on hosts are unclear. The main objective of this proposal is to uncover the complex biological interactions between non-retroviral RNA viruses and their hosts using the model system “Aedes albopictus and Flavivirus”. This system is ideal because Ae. albopictus is a known vector of non-retroviral RNA viruses, including several highly relevant for public health such as dengue viruses (Flaviviridae, Flavivirus) and NIRVs phylogenetically related to Flaviviruses have been identified in its genome. First, a population genomic approach will be used to interrogate the genome of Ae. albopictus from different geographic populations at their DNA and RNA levels. This approach will permit the systematic characterization of the distributions of NIRVs in natural host populations, the analyses of correlations between the presence of NIRVs and viral infections and the description of NIRVs genomic context, from which insights on mechanisms of NIRVs formation can be derived. Secondly, tissue-specificity of the NIRVs, their trans-generational stability and impact on mosquito biology will be analysed in a controlled laboratory environment. Somatic integrations could contribute to acquired immunity to their respective viruses or establishment of persistent viral infection. Germ-line integrations could have an evolutionary impact. If NIRVs affect Ae. albopictus vector competence or the genome of emerging viral populations, they could be manipulated for vector control purposes. Additionally, results on NIRV distribution in natural host populations and mechanisms of NIRVs formation will have implications in medicine because several non-retroviral RNA viruses are emerging as delivery systems for gene therapy applications.
Summary
Recent discoveries clearly show that non-retroviral RNA viruses, despite not coding for reverse transcriptase and integrase, can transfer genetic material to their hosts, similarly to DNA viruses and retroviruses. The distribution of non-retroviral integrated RNA viruses (NIRVs) in host populations, mechanisms of NIRVs formation and effects on hosts are unclear. The main objective of this proposal is to uncover the complex biological interactions between non-retroviral RNA viruses and their hosts using the model system “Aedes albopictus and Flavivirus”. This system is ideal because Ae. albopictus is a known vector of non-retroviral RNA viruses, including several highly relevant for public health such as dengue viruses (Flaviviridae, Flavivirus) and NIRVs phylogenetically related to Flaviviruses have been identified in its genome. First, a population genomic approach will be used to interrogate the genome of Ae. albopictus from different geographic populations at their DNA and RNA levels. This approach will permit the systematic characterization of the distributions of NIRVs in natural host populations, the analyses of correlations between the presence of NIRVs and viral infections and the description of NIRVs genomic context, from which insights on mechanisms of NIRVs formation can be derived. Secondly, tissue-specificity of the NIRVs, their trans-generational stability and impact on mosquito biology will be analysed in a controlled laboratory environment. Somatic integrations could contribute to acquired immunity to their respective viruses or establishment of persistent viral infection. Germ-line integrations could have an evolutionary impact. If NIRVs affect Ae. albopictus vector competence or the genome of emerging viral populations, they could be manipulated for vector control purposes. Additionally, results on NIRV distribution in natural host populations and mechanisms of NIRVs formation will have implications in medicine because several non-retroviral RNA viruses are emerging as delivery systems for gene therapy applications.
Max ERC Funding
1 686 875 €
Duration
Start date: 2016-05-01, End date: 2022-04-30
Project acronym REPSUMODDT
Project Mechanisms and regulators coordinating replication integrity and DNA damage tolerance.
Researcher (PI) Dana Branzei
Host Institution (HI) IFOM FONDAZIONE ISTITUTO FIRC DI ONCOLOGIA MOLECOLARE
Country Italy
Call Details Consolidator Grant (CoG), LS1, ERC-2015-CoG
Summary Accurate chromosomal DNA replication is of fundamental importance for cellular function, genome integrity and development. In response to replication perturbations, DNA damage response (DDR) and DNA damage tolerance (DDT) pathways become activated and are crucial for detection and tolerance of lesions, as well as for facilitating replication completion and supporting chromosome structural integrity. While important functions and key players of these regulatory processes have been outlined, much less is known about the choreography and mechanistic interplay between DDR and DDT during replication. Moreover, the principles by which they uniquely or commonly affect replication-associated chromosome integrity remain poorly understood.
Here, we will use novel tools and a palette of ingenious genetic, molecular and proteomic based experimental strategies, to investigate the replication stress response triggered by diverse endogenous and exogenous cues, and to identify the underlying mechanisms. We will define the principles of local and temporal regulation of DDT in response to genotoxic stress, with a focus on the mechanisms of SUMO-regulated DNA metabolism processes. Additionally, we will investigate the topological DNA transitions triggered at intrinsically difficult to replicate genomic regions, stalled and terminal forks, with the aim of identifying key mechanisms and regulators of replication integrity at specific complex genomic regions or following specific types of replication stress. Finally, we will explore the relationship between DDT, replication fork architecture and sister chromatid cohesion in the context of DDR- and SUMO-orchestrated DNA transactions. We expect that these studies will reveal new aspects of how replication-associated DNA metabolism processes are inter-related and regulated, uniformly or at specific loci in the genome, and will break new ground in areas of replication mechanisms and chromosome integrity in general.
Summary
Accurate chromosomal DNA replication is of fundamental importance for cellular function, genome integrity and development. In response to replication perturbations, DNA damage response (DDR) and DNA damage tolerance (DDT) pathways become activated and are crucial for detection and tolerance of lesions, as well as for facilitating replication completion and supporting chromosome structural integrity. While important functions and key players of these regulatory processes have been outlined, much less is known about the choreography and mechanistic interplay between DDR and DDT during replication. Moreover, the principles by which they uniquely or commonly affect replication-associated chromosome integrity remain poorly understood.
Here, we will use novel tools and a palette of ingenious genetic, molecular and proteomic based experimental strategies, to investigate the replication stress response triggered by diverse endogenous and exogenous cues, and to identify the underlying mechanisms. We will define the principles of local and temporal regulation of DDT in response to genotoxic stress, with a focus on the mechanisms of SUMO-regulated DNA metabolism processes. Additionally, we will investigate the topological DNA transitions triggered at intrinsically difficult to replicate genomic regions, stalled and terminal forks, with the aim of identifying key mechanisms and regulators of replication integrity at specific complex genomic regions or following specific types of replication stress. Finally, we will explore the relationship between DDT, replication fork architecture and sister chromatid cohesion in the context of DDR- and SUMO-orchestrated DNA transactions. We expect that these studies will reveal new aspects of how replication-associated DNA metabolism processes are inter-related and regulated, uniformly or at specific loci in the genome, and will break new ground in areas of replication mechanisms and chromosome integrity in general.
Max ERC Funding
1 991 250 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym SPRINT
Project Ultra-Short Pulse laser Resonators IN the Terahertz
Researcher (PI) Miriam Serena Vitiello
Host Institution (HI) CONSIGLIO NAZIONALE DELLE RICERCHE
Country Italy
Call Details Consolidator Grant (CoG), PE7, ERC-2015-CoG
Summary "Ultra-short light pulses with large instantaneous intensities can probe light-matter interaction phenomena, capture snapshots of molecular dynamics and drive high-speed communications. In a semiconductor laser, mode-locking is the primary way to generate ultrafast signals. Despite the intriguing perspectives, operation at Terahertz (THz) frequencies is facing fundamental limitations: engineering ""ultrafast"" THz semiconductor lasers from scratch or finding an integrated technology to shorten THz light pulses are currently two demanding routes.
SPRINT aims to innovatively combine the groundbreaking quantum cascade laser (QCL) technology with graphene, to develop a new generation of passive mode-locked THz photonic laser resonators, combined with unexplored electronic nanodetectors for ultrafast THz sensing and imaging.
To achieve these ambitious objectives, the versatile quantum design of QCLs will be exploited to engineer the laser gain spectrum on purpose. Resonators of unusual symmetry and shape, like photonic quasi-crystals or random patterns, will be implemented, offering the flexibility to control and guide photons and the lithographic capability to embed miniaturized intra-cavity passive components to probe and modulate light. Graphene, owing to its gapless nature and ultrafast, gating-tunable carrier dynamic, will lead to a major breakthrough: integration in the THz QCL cavity will allow superbly manipulating its functionalities. Antenna-coupled quantum-dot nanowires will be also devised to sense and probe ultra-short THz pulses.
The project will target radically new concepts and interdisciplinary approaches encompassing unconventional THz QCL micro-resonators, graphene and polaritonic THz saturable absorbers, non-linear ultra-low dimensional detection architectures.
Pushing forward the understanding of ultrafast dynamics in complex THz electronic and photonic systems, SPRINT prospects new directions and long-term impacts on fundamental and applied science."
Summary
"Ultra-short light pulses with large instantaneous intensities can probe light-matter interaction phenomena, capture snapshots of molecular dynamics and drive high-speed communications. In a semiconductor laser, mode-locking is the primary way to generate ultrafast signals. Despite the intriguing perspectives, operation at Terahertz (THz) frequencies is facing fundamental limitations: engineering ""ultrafast"" THz semiconductor lasers from scratch or finding an integrated technology to shorten THz light pulses are currently two demanding routes.
SPRINT aims to innovatively combine the groundbreaking quantum cascade laser (QCL) technology with graphene, to develop a new generation of passive mode-locked THz photonic laser resonators, combined with unexplored electronic nanodetectors for ultrafast THz sensing and imaging.
To achieve these ambitious objectives, the versatile quantum design of QCLs will be exploited to engineer the laser gain spectrum on purpose. Resonators of unusual symmetry and shape, like photonic quasi-crystals or random patterns, will be implemented, offering the flexibility to control and guide photons and the lithographic capability to embed miniaturized intra-cavity passive components to probe and modulate light. Graphene, owing to its gapless nature and ultrafast, gating-tunable carrier dynamic, will lead to a major breakthrough: integration in the THz QCL cavity will allow superbly manipulating its functionalities. Antenna-coupled quantum-dot nanowires will be also devised to sense and probe ultra-short THz pulses.
The project will target radically new concepts and interdisciplinary approaches encompassing unconventional THz QCL micro-resonators, graphene and polaritonic THz saturable absorbers, non-linear ultra-low dimensional detection architectures.
Pushing forward the understanding of ultrafast dynamics in complex THz electronic and photonic systems, SPRINT prospects new directions and long-term impacts on fundamental and applied science."
Max ERC Funding
1 990 011 €
Duration
Start date: 2016-09-01, End date: 2022-08-31
Project acronym TOPSIM
Project Topology and symmetries in synthetic fermionic systems
Researcher (PI) Leonardo Fallani
Host Institution (HI) UNIVERSITA DEGLI STUDI DI FIRENZE
Country Italy
Call Details Consolidator Grant (CoG), PE2, ERC-2015-CoG
Summary Topology and symmetry are two fundamental and intertwined concepts driving the behavior of fermionic systems in both condensed-matter and high-energy physics. The goal of the TOPSIM project is to address open problems concerning topological states of fermionic matter from an experimental point of view, by taking advantage of novel possibilities of quantum control on synthetic systems formed by ultracold neutral atoms. We will investigate the behavior of fermionic matter under strong gauge fields in order to study quantum Hall physics and the emergence of topological order in a fully tunable experimental geometry. We will also synthesize fermionic systems exhibiting enlarged interaction symmetries beyond the SU(2) symmetry of electrons, which will allow us to experimentally realize, for the first time, SU(N) models that have no other experimental counterpart in physics, and to use them to study the emergence of long-sought topological states of matter. With these ambitious goals, the TOPSIM project will considerably advance our understanding of topological fermionic matter, paving the way to new methods of investigation of open questions in both high- and low-energy physics, by approaching many-body problems with metrological quantum control.
Summary
Topology and symmetry are two fundamental and intertwined concepts driving the behavior of fermionic systems in both condensed-matter and high-energy physics. The goal of the TOPSIM project is to address open problems concerning topological states of fermionic matter from an experimental point of view, by taking advantage of novel possibilities of quantum control on synthetic systems formed by ultracold neutral atoms. We will investigate the behavior of fermionic matter under strong gauge fields in order to study quantum Hall physics and the emergence of topological order in a fully tunable experimental geometry. We will also synthesize fermionic systems exhibiting enlarged interaction symmetries beyond the SU(2) symmetry of electrons, which will allow us to experimentally realize, for the first time, SU(N) models that have no other experimental counterpart in physics, and to use them to study the emergence of long-sought topological states of matter. With these ambitious goals, the TOPSIM project will considerably advance our understanding of topological fermionic matter, paving the way to new methods of investigation of open questions in both high- and low-energy physics, by approaching many-body problems with metrological quantum control.
Max ERC Funding
1 595 000 €
Duration
Start date: 2016-11-01, End date: 2021-10-31