Project acronym AXIAL.EC
Project PRINCIPLES OF AXIAL POLARITY-DRIVEN VASCULAR PATTERNING
Researcher (PI) Claudio Franco
Host Institution (HI) INSTITUTO DE MEDICINA MOLECULAR JOAO LOBO ANTUNES
Country Portugal
Call Details Starting Grant (StG), LS4, ERC-2015-STG
Summary The formation of a functional patterned vascular network is essential for development, tissue growth and organ physiology. Several human vascular disorders arise from the mis-patterning of blood vessels, such as arteriovenous malformations, aneurysms and diabetic retinopathy. Although blood flow is recognised as a stimulus for vascular patterning, very little is known about the molecular mechanisms that regulate endothelial cell behaviour in response to flow and promote vascular patterning.
Recently, we uncovered that endothelial cells migrate extensively in the immature vascular network, and that endothelial cells polarise against the blood flow direction. Here, we put forward the hypothesis that vascular patterning is dependent on the polarisation and migration of endothelial cells against the flow direction, in a continuous flux of cells going from low-shear stress to high-shear stress regions. We will establish new reporter mouse lines to observe and manipulate endothelial polarity in vivo in order to investigate how polarisation and coordination of endothelial cells movements are orchestrated to generate vascular patterning. We will manipulate cell polarity using mouse models to understand the importance of cell polarisation in vascular patterning. Also, using a unique zebrafish line allowing analysis of endothelial cell polarity, we will perform a screen to identify novel regulators of vascular patterning. Finally, we will explore the hypothesis that defective flow-dependent endothelial polarisation underlies arteriovenous malformations using two genetic models.
This integrative approach, based on high-resolution imaging and unique experimental models, will provide a unifying model defining the cellular and molecular principles involved in vascular patterning. Given the physiological relevance of vascular patterning in health and disease, this research plan will set the basis for the development of novel clinical therapies targeting vascular disorders.
Summary
The formation of a functional patterned vascular network is essential for development, tissue growth and organ physiology. Several human vascular disorders arise from the mis-patterning of blood vessels, such as arteriovenous malformations, aneurysms and diabetic retinopathy. Although blood flow is recognised as a stimulus for vascular patterning, very little is known about the molecular mechanisms that regulate endothelial cell behaviour in response to flow and promote vascular patterning.
Recently, we uncovered that endothelial cells migrate extensively in the immature vascular network, and that endothelial cells polarise against the blood flow direction. Here, we put forward the hypothesis that vascular patterning is dependent on the polarisation and migration of endothelial cells against the flow direction, in a continuous flux of cells going from low-shear stress to high-shear stress regions. We will establish new reporter mouse lines to observe and manipulate endothelial polarity in vivo in order to investigate how polarisation and coordination of endothelial cells movements are orchestrated to generate vascular patterning. We will manipulate cell polarity using mouse models to understand the importance of cell polarisation in vascular patterning. Also, using a unique zebrafish line allowing analysis of endothelial cell polarity, we will perform a screen to identify novel regulators of vascular patterning. Finally, we will explore the hypothesis that defective flow-dependent endothelial polarisation underlies arteriovenous malformations using two genetic models.
This integrative approach, based on high-resolution imaging and unique experimental models, will provide a unifying model defining the cellular and molecular principles involved in vascular patterning. Given the physiological relevance of vascular patterning in health and disease, this research plan will set the basis for the development of novel clinical therapies targeting vascular disorders.
Max ERC Funding
1 618 750 €
Duration
Start date: 2016-09-01, End date: 2022-02-28
Project acronym Bi3BoostFlowBat
Project Bioinspired, biphasic and bipolar flow batteries with boosters for sustainable large-scale energy storage
Researcher (PI) Pekka PELJO
Host Institution (HI) TURUN YLIOPISTO
Country Finland
Call Details Starting Grant (StG), PE8, ERC-2020-STG
Summary To satisfy our growing energy demand while reducing reliance on fossil fuels, a switch to renewable energy sources is vital. The intermittent nature of the latter means innovations in energy storage technology is a key grand challenge. Cost and sustainability issues currently limit the widespread use of electrochemical energy storage technologies, such as lithium ion and redox flow batteries. As the scale for energy storage is simply enormous, the only option is to look for abundant materials. However, compounds that fulfil the extensive requirements entailed at low cost has yet to be reported. While it is possible that the holy grail of energy storage will be found, for example by advanced computational tools and machine learning to design “perfect” abundant molecules, a more flexible, innovative solution to sustainable and cost-effective large-scale energy storage is required. Bi3BoostFlowBat will develop game changing strategies to widen the choice of compounds utilizable for batteries to simultaneously satisfy the requirements for low cost, optimal redox potentials, high solubility and stability in all conditions. The aim of this project is to develop cost-efficient batteries by using solid boosters and by eliminating cross over. Two approaches will be pursued for cross-over elimination 1) bio-inspired polymer batteries, where cross-over of solubilized polymers is prevented by size-exclusion membranes and 2) biphasic emulsion flow batteries, where redox species are transferred to oil phase droplets upon charge. Third research direction focuses on systems to maintain a pH gradient, to allow operation of differential pH systems to improve the cell voltages. Limits of different approaches will be explored by taking an electrochemical engineering approach to model the performance of different systems and by validating the models experimentally. This work will chart the route towards the future third generation battery technologies for the large-scale energy storage.
Summary
To satisfy our growing energy demand while reducing reliance on fossil fuels, a switch to renewable energy sources is vital. The intermittent nature of the latter means innovations in energy storage technology is a key grand challenge. Cost and sustainability issues currently limit the widespread use of electrochemical energy storage technologies, such as lithium ion and redox flow batteries. As the scale for energy storage is simply enormous, the only option is to look for abundant materials. However, compounds that fulfil the extensive requirements entailed at low cost has yet to be reported. While it is possible that the holy grail of energy storage will be found, for example by advanced computational tools and machine learning to design “perfect” abundant molecules, a more flexible, innovative solution to sustainable and cost-effective large-scale energy storage is required. Bi3BoostFlowBat will develop game changing strategies to widen the choice of compounds utilizable for batteries to simultaneously satisfy the requirements for low cost, optimal redox potentials, high solubility and stability in all conditions. The aim of this project is to develop cost-efficient batteries by using solid boosters and by eliminating cross over. Two approaches will be pursued for cross-over elimination 1) bio-inspired polymer batteries, where cross-over of solubilized polymers is prevented by size-exclusion membranes and 2) biphasic emulsion flow batteries, where redox species are transferred to oil phase droplets upon charge. Third research direction focuses on systems to maintain a pH gradient, to allow operation of differential pH systems to improve the cell voltages. Limits of different approaches will be explored by taking an electrochemical engineering approach to model the performance of different systems and by validating the models experimentally. This work will chart the route towards the future third generation battery technologies for the large-scale energy storage.
Max ERC Funding
1 499 880 €
Duration
Start date: 2021-01-01, End date: 2025-12-31
Project acronym CapBed
Project Engineered Capillary Beds for Successful Prevascularization of Tissue Engineering Constructs
Researcher (PI) Rogerio Pedro Lemos de Sousa Pirraco
Host Institution (HI) UNIVERSIDADE DO MINHO
Country Portugal
Call Details Starting Grant (StG), PE8, ERC-2018-STG
Summary The demand for donated organs vastly outnumbers the supply, leading each year to the death of thousands of people and the suffering of millions more. Engineered tissues and organs following Tissue Engineering approaches are a possible solution to this problem. However, a prevascularization solution to irrigate complex engineered tissues and assure their survival after transplantation is currently elusive. In the human body, complex organs and tissues irrigation is achieved by a network of blood vessels termed capillary bed which suggests such a structure is needed in engineered tissues. Previous approaches to engineer capillary beds reached different levels of success but none yielded a fully functional one due to the inability in simultaneously addressing key elements such as correct angiogenic cell populations, a suitable matrix and dynamic conditions that mimic blood flow.
CapBed aims at proposing a new technology to fabricate in vitro capillary beds that include a vascular axis that can be anastomosed with a patient circulation. Such capillary beds could be used as prime tools to prevascularize in vitro engineered tissues and provide fast perfusion of those after transplantation to a patient. Cutting edge techniques will be for the first time integrated in a disruptive approach to address the requirements listed above. Angiogenic cell sheets of human Adipose-derived Stromal Vascular fraction cells will provide the cell populations that integrate the capillaries and manage its intricate formation, as well as the collagen required to build the matrix that will hold the capillary beds. Innovative fabrication technologies such as 3D printing and laser photoablation will be used for the fabrication of the micropatterned matrix that will allow fluid flow through microfluidics. The resulting functional capillary beds can be used with virtually every tissue engineering strategy rendering the proposed strategy with massive economical, scientific and medical potential
Summary
The demand for donated organs vastly outnumbers the supply, leading each year to the death of thousands of people and the suffering of millions more. Engineered tissues and organs following Tissue Engineering approaches are a possible solution to this problem. However, a prevascularization solution to irrigate complex engineered tissues and assure their survival after transplantation is currently elusive. In the human body, complex organs and tissues irrigation is achieved by a network of blood vessels termed capillary bed which suggests such a structure is needed in engineered tissues. Previous approaches to engineer capillary beds reached different levels of success but none yielded a fully functional one due to the inability in simultaneously addressing key elements such as correct angiogenic cell populations, a suitable matrix and dynamic conditions that mimic blood flow.
CapBed aims at proposing a new technology to fabricate in vitro capillary beds that include a vascular axis that can be anastomosed with a patient circulation. Such capillary beds could be used as prime tools to prevascularize in vitro engineered tissues and provide fast perfusion of those after transplantation to a patient. Cutting edge techniques will be for the first time integrated in a disruptive approach to address the requirements listed above. Angiogenic cell sheets of human Adipose-derived Stromal Vascular fraction cells will provide the cell populations that integrate the capillaries and manage its intricate formation, as well as the collagen required to build the matrix that will hold the capillary beds. Innovative fabrication technologies such as 3D printing and laser photoablation will be used for the fabrication of the micropatterned matrix that will allow fluid flow through microfluidics. The resulting functional capillary beds can be used with virtually every tissue engineering strategy rendering the proposed strategy with massive economical, scientific and medical potential
Max ERC Funding
1 499 940 €
Duration
Start date: 2018-11-01, End date: 2024-04-30
Project acronym DIRECT-fMRI
Project Sensing activity-induced cell swellings and ensuing neurotransmitter releases for in-vivo functional imaging sans hemodynamics
Researcher (PI) Noam Shemesh
Host Institution (HI) FUNDACAO D. ANNA SOMMER CHAMPALIMAUD E DR. CARLOS MONTEZ CHAMPALIMAUD
Country Portugal
Call Details Starting Grant (StG), PE4, ERC-2015-STG
Summary Functional-Magnetic Resonance Imaging (fMRI) has transformed our understanding of brain function due to its ability to noninvasively tag ‘active’ brain regions. Nevertheless, fMRI only detects neural activity indirectly, by relying on slow hemodynamic couplings whose relationships with underlying neural activity are not fully known.
We have recently pioneered two unique MR approaches: Non-Uniform Oscillating-Gradient Spin-Echo (NOGSE) MRI and Relaxation Enhanced MR Spectroscopy (RE MRS). NOGSE-MRI is an exquisite microstructural probe, sensing cell sizes (l) with an unprecedented l^6 sensitivity (compared to l^2 in conventional approaches); RE MRS is a new spectral technique capable of recording metabolic signals with extraordinary fidelity at ultrahigh fields.
This proposal aims to harness these novel concepts for mapping neural activity directly, without relying on hemodynamics. The specific objectives of this proposal are:
(1) Mapping neural activity via sensing cell swellings upon activity (μfMRI): we hypothesize that NOGSE can robustly sense subtle changes in cellular microstructure upon neural firings and hence convey neural activity directly.
(2) Probing the nature of elicited activity via detection of neurotransmitter release: we posit that RE MRS is sufficiently sensitive to robustly detect changes in Glutamate and GABA signals upon activation.
(3) Network mapping in optogenetically-stimulated, behaving mice: we propose to couple our novel approaches with optogenetics to resolve neural correlates of behavior in awake, behaving mice.
Simulations for μfMRI predict >4% signal changes upon subtle cell swellings; further, our in vivo RE MRS experiments have detected metabolites with SNR>50 in only 6 seconds. Hence, these two complementary –and importantly, hemodynamics-independent– approaches will represent a true paradigm shift: from indirect detection of neurovasculature couplings towards direct and noninvasive mapping of neural activity in vivo.
Summary
Functional-Magnetic Resonance Imaging (fMRI) has transformed our understanding of brain function due to its ability to noninvasively tag ‘active’ brain regions. Nevertheless, fMRI only detects neural activity indirectly, by relying on slow hemodynamic couplings whose relationships with underlying neural activity are not fully known.
We have recently pioneered two unique MR approaches: Non-Uniform Oscillating-Gradient Spin-Echo (NOGSE) MRI and Relaxation Enhanced MR Spectroscopy (RE MRS). NOGSE-MRI is an exquisite microstructural probe, sensing cell sizes (l) with an unprecedented l^6 sensitivity (compared to l^2 in conventional approaches); RE MRS is a new spectral technique capable of recording metabolic signals with extraordinary fidelity at ultrahigh fields.
This proposal aims to harness these novel concepts for mapping neural activity directly, without relying on hemodynamics. The specific objectives of this proposal are:
(1) Mapping neural activity via sensing cell swellings upon activity (μfMRI): we hypothesize that NOGSE can robustly sense subtle changes in cellular microstructure upon neural firings and hence convey neural activity directly.
(2) Probing the nature of elicited activity via detection of neurotransmitter release: we posit that RE MRS is sufficiently sensitive to robustly detect changes in Glutamate and GABA signals upon activation.
(3) Network mapping in optogenetically-stimulated, behaving mice: we propose to couple our novel approaches with optogenetics to resolve neural correlates of behavior in awake, behaving mice.
Simulations for μfMRI predict >4% signal changes upon subtle cell swellings; further, our in vivo RE MRS experiments have detected metabolites with SNR>50 in only 6 seconds. Hence, these two complementary –and importantly, hemodynamics-independent– approaches will represent a true paradigm shift: from indirect detection of neurovasculature couplings towards direct and noninvasive mapping of neural activity in vivo.
Max ERC Funding
1 787 500 €
Duration
Start date: 2016-03-01, End date: 2021-02-28
Project acronym ELASTIC-TURBULENCE
Project Purely-elastic flow instabilities and transition to elastic turbulence in microscale flows of complex fluids
Researcher (PI) Manuel Antonio Moreira Alves
Host Institution (HI) UNIVERSIDADE DO PORTO
Country Portugal
Call Details Starting Grant (StG), PE8, ERC-2012-StG_20111012
Summary Flows of complex fluids, such as many biological fluids and most synthetic fluids, are common in our daily life and are very important from an industrial perspective. Because of their inherent nonlinearity, the flow of complex viscoelastic fluids often leads to counterintuitive and complex behaviour and, above critical conditions, can prompt flow instabilities even under low Reynolds number conditions which are entirely absent in the corresponding Newtonian fluid flows.
The primary goal of this project is to substantially expand the frontiers of our current knowledge regarding the mechanisms that lead to the development of such purely-elastic flow instabilities, and ultimately to understand the transition to so-called “elastic turbulence”, a turbulent-like phenomenon which can arise even under inertialess flow conditions. This is an extremely challenging problem, and to significantly advance our knowledge in such important flows these instabilities will be investigated in a combined manner encompassing experiments, theory and numerical simulations. Such a holistic approach will enable us to understand the underlying mechanisms of those instabilities and to develop accurate criteria for their prediction far in advance of what we could achieve with either approach separately. A deep understanding of the mechanisms generating elastic instabilities and subsequent transition to elastic turbulence is crucial from a fundamental point of view and for many important practical applications involving engineered complex fluids, such as the design of microfluidic mixers for efficient operation under inertialess flow conditions, or the development of highly efficient micron-sized energy management and mass transfer systems.
This research proposal will create a solid basis for the establishment of an internationally-leading research group led by the PI studying flow instabilities and elastic turbulence in complex fluid flows.
Summary
Flows of complex fluids, such as many biological fluids and most synthetic fluids, are common in our daily life and are very important from an industrial perspective. Because of their inherent nonlinearity, the flow of complex viscoelastic fluids often leads to counterintuitive and complex behaviour and, above critical conditions, can prompt flow instabilities even under low Reynolds number conditions which are entirely absent in the corresponding Newtonian fluid flows.
The primary goal of this project is to substantially expand the frontiers of our current knowledge regarding the mechanisms that lead to the development of such purely-elastic flow instabilities, and ultimately to understand the transition to so-called “elastic turbulence”, a turbulent-like phenomenon which can arise even under inertialess flow conditions. This is an extremely challenging problem, and to significantly advance our knowledge in such important flows these instabilities will be investigated in a combined manner encompassing experiments, theory and numerical simulations. Such a holistic approach will enable us to understand the underlying mechanisms of those instabilities and to develop accurate criteria for their prediction far in advance of what we could achieve with either approach separately. A deep understanding of the mechanisms generating elastic instabilities and subsequent transition to elastic turbulence is crucial from a fundamental point of view and for many important practical applications involving engineered complex fluids, such as the design of microfluidic mixers for efficient operation under inertialess flow conditions, or the development of highly efficient micron-sized energy management and mass transfer systems.
This research proposal will create a solid basis for the establishment of an internationally-leading research group led by the PI studying flow instabilities and elastic turbulence in complex fluid flows.
Max ERC Funding
994 110 €
Duration
Start date: 2012-10-01, End date: 2018-01-31
Project acronym EnDeCAD
Project Enhancers Decoding the Mechanisms Underlying CAD Risk
Researcher (PI) Minna Unelma KAIKKONEN-MaeaeTTae
Host Institution (HI) ITA-SUOMEN YLIOPISTO
Country Finland
Call Details Starting Grant (StG), LS4, ERC-2018-STG
Summary In recent years, genome-wide association studies (GWAS) have discovered hundreds of single nucleotide polymorphisms (SNPs) which are significantly associated with coronary artery disease (CAD). However, the SNPs identified by GWAS explain typically only small portion of the trait heritability and vast majority of variants do not have known biological roles. This is explained by variants lying within noncoding regions such as in cell type specific enhancers and additionally ‘the lead SNP’ identified in GWAS may not be the ‘the causal SNP’ but only linked with a trait associated SNP. Therefore, a major priority for understanding disease mechanisms is to understand at the molecular level the function of each CAD loci. In this study we aim to bring the functional characterization of SNPs associated with CAD risk to date by focusing our search for causal SNPs to enhancers of disease relevant cell types, namely endothelial cells, macrophages and smooth muscle cells of the vessel wall, hepatocytes and adipocytes. By combination of massively parallel enhancer activity measurements, collection of novel eQTL data throughout cell types under disease relevant stimuli, identification of the target genes in physical interaction with the candidate enhancers and establishment of correlative relationships between enhancer activity and gene expression we hope to identify causal enhancer variants and link them with target genes to obtain a more complete picture of the gene regulatory events driving disease progression and the genetic basis of CAD. Linking these findings with our deep phenotypic data for cardiovascular risk factors, gene expression and metabolomics has the potential to improve risk prediction, biomarker identification and treatment selection in clinical practice. Ultimately, this research strives for fundamental discoveries and breakthrough that advance our knowledge of CAD and provides pioneering steps towards taking the growing array of GWAS for translatable results.
Summary
In recent years, genome-wide association studies (GWAS) have discovered hundreds of single nucleotide polymorphisms (SNPs) which are significantly associated with coronary artery disease (CAD). However, the SNPs identified by GWAS explain typically only small portion of the trait heritability and vast majority of variants do not have known biological roles. This is explained by variants lying within noncoding regions such as in cell type specific enhancers and additionally ‘the lead SNP’ identified in GWAS may not be the ‘the causal SNP’ but only linked with a trait associated SNP. Therefore, a major priority for understanding disease mechanisms is to understand at the molecular level the function of each CAD loci. In this study we aim to bring the functional characterization of SNPs associated with CAD risk to date by focusing our search for causal SNPs to enhancers of disease relevant cell types, namely endothelial cells, macrophages and smooth muscle cells of the vessel wall, hepatocytes and adipocytes. By combination of massively parallel enhancer activity measurements, collection of novel eQTL data throughout cell types under disease relevant stimuli, identification of the target genes in physical interaction with the candidate enhancers and establishment of correlative relationships between enhancer activity and gene expression we hope to identify causal enhancer variants and link them with target genes to obtain a more complete picture of the gene regulatory events driving disease progression and the genetic basis of CAD. Linking these findings with our deep phenotypic data for cardiovascular risk factors, gene expression and metabolomics has the potential to improve risk prediction, biomarker identification and treatment selection in clinical practice. Ultimately, this research strives for fundamental discoveries and breakthrough that advance our knowledge of CAD and provides pioneering steps towards taking the growing array of GWAS for translatable results.
Max ERC Funding
1 498 647 €
Duration
Start date: 2019-01-01, End date: 2023-12-31
Project acronym FARE
Project FAKE NEWS AND REAL PEOPLE – USING BIG DATA TO UNDERSTAND HUMAN BEHAVIOUR
Researcher (PI) Maria Joana GONcALVES-Sa
Host Institution (HI) LABORATORIO DE INSTRUMENTACAO E FISICA EXPERIMENTAL DE PARTICULAS LIP
Country Portugal
Call Details Starting Grant (StG), SH3, ERC-2019-STG
Summary Recent events, from the anti-vaccination movement, to Brexit and even to mob killings, have raised serious concerns about the influence of the so-called fake news (FN). False information is not new in human history, but the recent surge in online activity, coupled with poor digital literacy, consumer profiling, and large profits from ad revenues, created a perfect storm for the FN epidemic, with still unimaginable consequences.
This challenge is interdisciplinary and requires academic research to guide current calls for action issued by academics, governmental and non-governmental agencies, and the social network platforms themselves. FARE will enrich current efforts, which mostly confront FN spreading from an applied perspective, by offering a theoretical framework that allows to make testable predictions. FARE argues that sharing of FN is a deviation from pure rationality and brings together 1) state of the art knowledge in behavioural psychology, to assess the role that cognitive biases play in susceptibility to FN, and 2) current models in network science and epidemiology, to test whether FN spread more like simple or complex contagions. Finally, fully recognizing that these novel big-data approaches carry great risks, FARE will develop a new strategy, mostly based on distributed computing, and guidelines to the ethical handling of human-related big-data.
Together, FARE will offer a comprehensive model to ask questions such as: 1) What role(s) cognitive biases play in FN spreading? 2) How does network architecture affect FNs spread? 3) How do biases and position on networks build on each other to impact propagation? 4) What monitoring and mitigation interventions are likely to be more efficient?
Moreover, the study of FN from such a conceptual perspective has the potential to profoundly increase our knowledge on human behaviour and information spread, beyond specific problems, with implications for communication (science, political), economics, and psychology.
Summary
Recent events, from the anti-vaccination movement, to Brexit and even to mob killings, have raised serious concerns about the influence of the so-called fake news (FN). False information is not new in human history, but the recent surge in online activity, coupled with poor digital literacy, consumer profiling, and large profits from ad revenues, created a perfect storm for the FN epidemic, with still unimaginable consequences.
This challenge is interdisciplinary and requires academic research to guide current calls for action issued by academics, governmental and non-governmental agencies, and the social network platforms themselves. FARE will enrich current efforts, which mostly confront FN spreading from an applied perspective, by offering a theoretical framework that allows to make testable predictions. FARE argues that sharing of FN is a deviation from pure rationality and brings together 1) state of the art knowledge in behavioural psychology, to assess the role that cognitive biases play in susceptibility to FN, and 2) current models in network science and epidemiology, to test whether FN spread more like simple or complex contagions. Finally, fully recognizing that these novel big-data approaches carry great risks, FARE will develop a new strategy, mostly based on distributed computing, and guidelines to the ethical handling of human-related big-data.
Together, FARE will offer a comprehensive model to ask questions such as: 1) What role(s) cognitive biases play in FN spreading? 2) How does network architecture affect FNs spread? 3) How do biases and position on networks build on each other to impact propagation? 4) What monitoring and mitigation interventions are likely to be more efficient?
Moreover, the study of FN from such a conceptual perspective has the potential to profoundly increase our knowledge on human behaviour and information spread, beyond specific problems, with implications for communication (science, political), economics, and psychology.
Max ERC Funding
1 499 844 €
Duration
Start date: 2020-10-01, End date: 2025-09-30
Project acronym FattyCyanos
Project Fatty acid incorporation and modification in cyanobacterial natural products
Researcher (PI) Pedro LEaO
Host Institution (HI) CENTRO INTERDISCIPLINAR DE INVESTIGACAO MARINHA E AMBIENTAL
Country Portugal
Call Details Starting Grant (StG), PE5, ERC-2017-STG
Summary Known, but mostly novel natural products (NPs) are in high demand – these are used in drugs, cosmetics and agrochemicals and serve also as research tools to probe biological systems. NP structures inspire chemists to develop new syntheses, and NP biosynthetic enzymes add to the metabolic engineer’s toolbox. The advent of next generation DNA-sequencing has revealed a vastly rich pool of NP biosynthetic gene clusters (BGCs) among bacterial genomes, most of which with no corresponding NP. Hence, opportunities abound for the discovery of new chemistry and enzymology that has the potential to push the boundaries of chemical space and enzymatic reactivity. Still, we cannot reliably predict chemistry from BGCs with unusual organization or encoding unknown functionalities, and, for molecules of unorthodox architecture, it is difficult to anticipate how their BGCs are organized. It is the valuable, truly novel chemistry and biochemistry that lies on these unexplored connections, that we aim to reveal with this proposal. To achieve it, we will work with a chemically-talented group of organisms – cyanobacteria, and with a specific structural class – fatty acids (FAs) – that is metabolized in a quite peculiar fashion by these organisms, paving the way for NP and enzyme discovery. On one hand, we will exploit the unique FA metabolism of cyanobacteria to develop a feeding strategy that will quickly reveal unprecedented FA-incorporating NPs. On the other, we will scrutinize the intriguing biosynthesis of three unique classes of metabolites that we have isolated recently and that incorporate and modify FA-moieties. We will find the BGCs for these compounds and dissect the functionality involved in such puzzling modifications to uncover important underlying enzymatic chemistry. This proposal is a blend of discovery- and hypothesis-driven research at the NP chemistry/biosynthesis interface that draws on the experience of the PI’s work on different aspects of cyanobacterial NPs.
Summary
Known, but mostly novel natural products (NPs) are in high demand – these are used in drugs, cosmetics and agrochemicals and serve also as research tools to probe biological systems. NP structures inspire chemists to develop new syntheses, and NP biosynthetic enzymes add to the metabolic engineer’s toolbox. The advent of next generation DNA-sequencing has revealed a vastly rich pool of NP biosynthetic gene clusters (BGCs) among bacterial genomes, most of which with no corresponding NP. Hence, opportunities abound for the discovery of new chemistry and enzymology that has the potential to push the boundaries of chemical space and enzymatic reactivity. Still, we cannot reliably predict chemistry from BGCs with unusual organization or encoding unknown functionalities, and, for molecules of unorthodox architecture, it is difficult to anticipate how their BGCs are organized. It is the valuable, truly novel chemistry and biochemistry that lies on these unexplored connections, that we aim to reveal with this proposal. To achieve it, we will work with a chemically-talented group of organisms – cyanobacteria, and with a specific structural class – fatty acids (FAs) – that is metabolized in a quite peculiar fashion by these organisms, paving the way for NP and enzyme discovery. On one hand, we will exploit the unique FA metabolism of cyanobacteria to develop a feeding strategy that will quickly reveal unprecedented FA-incorporating NPs. On the other, we will scrutinize the intriguing biosynthesis of three unique classes of metabolites that we have isolated recently and that incorporate and modify FA-moieties. We will find the BGCs for these compounds and dissect the functionality involved in such puzzling modifications to uncover important underlying enzymatic chemistry. This proposal is a blend of discovery- and hypothesis-driven research at the NP chemistry/biosynthesis interface that draws on the experience of the PI’s work on different aspects of cyanobacterial NPs.
Max ERC Funding
1 462 938 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym GLUCOSE SENSING
Project Transcriptional networks in glucose sensing
Researcher (PI) Ville Ilmari Hietakangas
Host Institution (HI) HELSINGIN YLIOPISTO
Country Finland
Call Details Starting Grant (StG), LS4, ERC-2011-StG_20101109
Summary Glucose is key source of nutritional energy and raw material for biosynthetic processes. Maintaining glucose homeostasis requires a regulatory network that functions both in the systemic level through hormonal signaling and locally at the intracellular level. Insulin signalling is the main hormonal mechanism involved in maintaining the levels of circulating glucose through regulation of cellular glucose intake and metabolism. While the signalling pathways mediating the effects of insulin have been thoroughly studied, the transcriptional networks downstream of insulin signalling are not comprehensively understood. In addition to insulin signalling, intracellular glucose sensing mechanisms, including transcription factor complex MondoA/B-Mlx, have recently emerged as important regulators of glucose metabolism. In the proposed project we aim to take a systematic approach to characterize the transcriptional regulators involved in glucose sensing and metabolism in physiological context, using Drosophila as the main model system. We will use several complementary screening strategies, both in vivo and in cell culture, to identify transcription factors regulated by insulin and intracellular glucose. Identified transcription factors will be exposed to a panel of in vivo tests measuring parameters related to glucose and energy metabolism, aiming to identify those transcriptional regulators most essential in maintaining glucose homeostasis. With these factors, we will proceed to in-depth analysis, generating mutant alleles, analysing their metabolic profile and physiologically important target genes as well as functional conservation in mammals. Our aim is to identify and characterize several novel transcriptional regulators involved in glucose metabolism and to achieve a comprehensive overview on how these transcriptional regulators act together to achieve metabolic homeostasis in response to fluctuating dietary glucose intake.
Summary
Glucose is key source of nutritional energy and raw material for biosynthetic processes. Maintaining glucose homeostasis requires a regulatory network that functions both in the systemic level through hormonal signaling and locally at the intracellular level. Insulin signalling is the main hormonal mechanism involved in maintaining the levels of circulating glucose through regulation of cellular glucose intake and metabolism. While the signalling pathways mediating the effects of insulin have been thoroughly studied, the transcriptional networks downstream of insulin signalling are not comprehensively understood. In addition to insulin signalling, intracellular glucose sensing mechanisms, including transcription factor complex MondoA/B-Mlx, have recently emerged as important regulators of glucose metabolism. In the proposed project we aim to take a systematic approach to characterize the transcriptional regulators involved in glucose sensing and metabolism in physiological context, using Drosophila as the main model system. We will use several complementary screening strategies, both in vivo and in cell culture, to identify transcription factors regulated by insulin and intracellular glucose. Identified transcription factors will be exposed to a panel of in vivo tests measuring parameters related to glucose and energy metabolism, aiming to identify those transcriptional regulators most essential in maintaining glucose homeostasis. With these factors, we will proceed to in-depth analysis, generating mutant alleles, analysing their metabolic profile and physiologically important target genes as well as functional conservation in mammals. Our aim is to identify and characterize several novel transcriptional regulators involved in glucose metabolism and to achieve a comprehensive overview on how these transcriptional regulators act together to achieve metabolic homeostasis in response to fluctuating dietary glucose intake.
Max ERC Funding
1 496 930 €
Duration
Start date: 2012-01-01, End date: 2017-02-28
Project acronym GREEN
Project Generating Energy from Electroactive Algae
Researcher (PI) Paulo ROCHA
Host Institution (HI) UNIVERSIDADE DE COIMBRA
Country Portugal
Call Details Starting Grant (StG), PE8, ERC-2020-STG
Summary The aim of this grant is to establish a world leading research centre focusing on developing a radically different way to generate clean energy from algae. GREEN will deliver a self-sustainable bioenergy generator, with an output power of the order of W/m2 that is at least 100 times larger than current state-of-art bioenergy generators. The unprecedented enhancement in output power finally breaks the power scalability barrier for bioenergy generators and in this way delivers impact on the world’s renewable energy research trajectory.
I have recently discovered that a population of diatoms, a form of algae, communicate in a cooperative manner and produce long lasting large magnitude electrical oscillations. The discovery has been made possible through my recent breakthrough - I have developed a large area and low impedance transducer to record cooperative communication in cells.
My idea is to harvest the generated electricity from the algae. Using 2D electrodes, the output power is µW/m2, which is low. However, the power increases with the density of diatoms adhered to the electrode and with the electrical coupling of the cells to the electrode. By going from a 2D to porous 3D electrodes, and by optimizing the coupling an output power of W/m2 is within my reach.
To deliver the new bioenergy generator, it is essential to understand 1) which materials and 3D electrode geometries comprise larger cell densities and enable a more efficient charge transfer from the living organisms to the electrode 2) which organisms provide the higher output powers, and 3) how the electric circuitry will be developed to store and deliver the generated power.
This multidisciplinary research will advance the state-of-the-art by delivering a prototype for a new green self-sustained energy harvester, suitable for power scalability, through realising technological advances in 1) electrochemical electrodes, 2) cooperative signalling mechanisms in algae and 3) energy harvesting circuits.
Summary
The aim of this grant is to establish a world leading research centre focusing on developing a radically different way to generate clean energy from algae. GREEN will deliver a self-sustainable bioenergy generator, with an output power of the order of W/m2 that is at least 100 times larger than current state-of-art bioenergy generators. The unprecedented enhancement in output power finally breaks the power scalability barrier for bioenergy generators and in this way delivers impact on the world’s renewable energy research trajectory.
I have recently discovered that a population of diatoms, a form of algae, communicate in a cooperative manner and produce long lasting large magnitude electrical oscillations. The discovery has been made possible through my recent breakthrough - I have developed a large area and low impedance transducer to record cooperative communication in cells.
My idea is to harvest the generated electricity from the algae. Using 2D electrodes, the output power is µW/m2, which is low. However, the power increases with the density of diatoms adhered to the electrode and with the electrical coupling of the cells to the electrode. By going from a 2D to porous 3D electrodes, and by optimizing the coupling an output power of W/m2 is within my reach.
To deliver the new bioenergy generator, it is essential to understand 1) which materials and 3D electrode geometries comprise larger cell densities and enable a more efficient charge transfer from the living organisms to the electrode 2) which organisms provide the higher output powers, and 3) how the electric circuitry will be developed to store and deliver the generated power.
This multidisciplinary research will advance the state-of-the-art by delivering a prototype for a new green self-sustained energy harvester, suitable for power scalability, through realising technological advances in 1) electrochemical electrodes, 2) cooperative signalling mechanisms in algae and 3) energy harvesting circuits.
Max ERC Funding
2 267 667 €
Duration
Start date: 2021-01-01, End date: 2025-12-31