Project acronym ADDABU
Project Automated detection of damage to buildings
Researcher (PI) Luc VAN GOOL
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Proof of Concept (PoC), ERC-2017-PoC
Summary Hail and storm damages represent the most often occurring cases for building insurance companies. Currently, the damage is estimated by an insurance expert, visiting the damaged building and drafting a report. Researchers at the Computer Vision Lab at ETH Zurich joined forces with business and sales people, spinning out the company Casalva, to strongly reduce such costs via automated image analysis. The idea is that the insurers’ clients upload photos of the damages, which will then be analyzed automatically by a computer. This involves computer vision technologies – grounded in the ERC project VarCity – to recognize the damaged building structures and to analyze the corresponding textures as to assess the extent of the damage and the estimated costs for its repair. Cutting costs is not the only consideration, as the fast assessment of damages improves customer satisfaction and prevents the occurrence of additional damages because of a delayed repair (like water leaking before repair). Such follow-on damages are estimated to be 20% of overall costs on average and are therefore far from negligible. Guaranteeing a short term response currently is a major issue, as a single storm may affect thousands of buildings. Processing times tend to stretch out due to the peak in cases following such extreme weather events. Over half of hail storm damage cases concern facade structures. The VarCity project produced methods to automatically parse facades into such structures, and to select the best way to describe their textures. These will be refined to optimally deal with the application area. The remaining technical developments and risk mitigations will be funded through other means (a Swiss project that has already been submitted), while this Proof-of-Concept project will focus on equally important aspects like market analysis, development of a corporate identity and graphical house style for the Casalva spin-off, that has been created but should now get market introduction.
Summary
Hail and storm damages represent the most often occurring cases for building insurance companies. Currently, the damage is estimated by an insurance expert, visiting the damaged building and drafting a report. Researchers at the Computer Vision Lab at ETH Zurich joined forces with business and sales people, spinning out the company Casalva, to strongly reduce such costs via automated image analysis. The idea is that the insurers’ clients upload photos of the damages, which will then be analyzed automatically by a computer. This involves computer vision technologies – grounded in the ERC project VarCity – to recognize the damaged building structures and to analyze the corresponding textures as to assess the extent of the damage and the estimated costs for its repair. Cutting costs is not the only consideration, as the fast assessment of damages improves customer satisfaction and prevents the occurrence of additional damages because of a delayed repair (like water leaking before repair). Such follow-on damages are estimated to be 20% of overall costs on average and are therefore far from negligible. Guaranteeing a short term response currently is a major issue, as a single storm may affect thousands of buildings. Processing times tend to stretch out due to the peak in cases following such extreme weather events. Over half of hail storm damage cases concern facade structures. The VarCity project produced methods to automatically parse facades into such structures, and to select the best way to describe their textures. These will be refined to optimally deal with the application area. The remaining technical developments and risk mitigations will be funded through other means (a Swiss project that has already been submitted), while this Proof-of-Concept project will focus on equally important aspects like market analysis, development of a corporate identity and graphical house style for the Casalva spin-off, that has been created but should now get market introduction.
Max ERC Funding
143 750 €
Duration
Start date: 2017-09-01, End date: 2018-08-31
Project acronym AGRISCENTS
Project Scents and sensibility in agriculture: exploiting specificity in herbivore- and pathogen-induced plant volatiles for real-time crop monitoring
Researcher (PI) Theodoor Turlings
Host Institution (HI) UNIVERSITE DE NEUCHATEL
Call Details Advanced Grant (AdG), LS9, ERC-2017-ADG
Summary Plants typically release large quantities of volatiles in response to attack by herbivores or pathogens. I may claim to have contributed to various breakthroughs in this research field, including the discovery that the volatile blends induced by different attackers are astonishingly specific, resulting in characteristic, readily distinguishable odour blends. Using maize as our model plant, I wish to take several leaps forward in our understanding of this signal specificity and use this knowledge to develop sensors for the real-time detection of crop pests and diseases. For this, three interconnected work-packages will aim to:
• Develop chemical analytical techniques and statistical models to decipher the odorous vocabulary of plants, and to create a complete inventory of “odour-prints” for a wide range of herbivore-plant and pathogen-plant combinations, including simultaneous infestations.
• Develop and optimize nano-mechanical sensors for the detection of specific plant volatile mixtures. For this, we will initially adapt a prototype sensor that has been successfully developed for the detection of cancer-related volatiles in human breath.
• Genetically manipulate maize plants to release a unique blend of root-produced volatiles upon herbivory. For this, we will engineer gene cassettes that combine recently identified P450 (CYP) genes from poplar with inducible, root-specific promoters from maize. This will result in maize plants that, in response to pest attack, release easy-to-detect aldoximes and nitriles from their roots.
In short, by investigating and manipulating the specificity of inducible odour blends we will generate the necessary knowhow to develop a novel odour-detection device. The envisioned sensor technology will permit real-time monitoring of the pests and enable farmers to apply crop protection treatments at the right time and in the right place.
Summary
Plants typically release large quantities of volatiles in response to attack by herbivores or pathogens. I may claim to have contributed to various breakthroughs in this research field, including the discovery that the volatile blends induced by different attackers are astonishingly specific, resulting in characteristic, readily distinguishable odour blends. Using maize as our model plant, I wish to take several leaps forward in our understanding of this signal specificity and use this knowledge to develop sensors for the real-time detection of crop pests and diseases. For this, three interconnected work-packages will aim to:
• Develop chemical analytical techniques and statistical models to decipher the odorous vocabulary of plants, and to create a complete inventory of “odour-prints” for a wide range of herbivore-plant and pathogen-plant combinations, including simultaneous infestations.
• Develop and optimize nano-mechanical sensors for the detection of specific plant volatile mixtures. For this, we will initially adapt a prototype sensor that has been successfully developed for the detection of cancer-related volatiles in human breath.
• Genetically manipulate maize plants to release a unique blend of root-produced volatiles upon herbivory. For this, we will engineer gene cassettes that combine recently identified P450 (CYP) genes from poplar with inducible, root-specific promoters from maize. This will result in maize plants that, in response to pest attack, release easy-to-detect aldoximes and nitriles from their roots.
In short, by investigating and manipulating the specificity of inducible odour blends we will generate the necessary knowhow to develop a novel odour-detection device. The envisioned sensor technology will permit real-time monitoring of the pests and enable farmers to apply crop protection treatments at the right time and in the right place.
Max ERC Funding
2 498 086 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym AMSEL
Project Atomic Force Microscopy for Molecular Structure Elucidation
Researcher (PI) Leo Gross
Host Institution (HI) IBM RESEARCH GMBH
Call Details Consolidator Grant (CoG), PE4, ERC-2015-CoG
Summary Molecular structure elucidation is of great importance in synthetic chemistry, pharmacy, life sciences, energy and environmental sciences, and technology applications. To date structure elucidation by atomic force microscopy (AFM) has been demonstrated for a few, small and mainly planar molecules. In this project high-risk, high-impact scientific questions will be solved using structure elucidation with the AFM employing a novel tool and novel methodologies.
A combined low-temperature scanning tunneling microscope/atomic force microscope (LT-STM/AFM) with high throughput and in situ electrospray deposition method will be developed. Chemical resolution will be achieved by novel measurement techniques, in particular the usage of different and novel tip functionalizations and combination with Kelvin probe force microscopy. Elements will be identified using substructure recognition provided by a database that will be erected and by refined theory and simulations.
The developed tools and techniques will be applied to molecules of increasing fragility, complexity, size, and three-dimensionality. In particular samples that are challenging to characterize with conventional methods will be studied. Complex molecular mixtures will be investigated molecule-by-molecule taking advantage of the single-molecule sensitivity. The absolute stereochemistry of molecules will be determined, resolving molecules with multiple stereocenters. The operation of single molecular machines as nanocars and molecular gears will be investigated. Reactive intermediates generated with atomic manipulation will be characterized and their on-surface reactivity will be studied by AFM.
Summary
Molecular structure elucidation is of great importance in synthetic chemistry, pharmacy, life sciences, energy and environmental sciences, and technology applications. To date structure elucidation by atomic force microscopy (AFM) has been demonstrated for a few, small and mainly planar molecules. In this project high-risk, high-impact scientific questions will be solved using structure elucidation with the AFM employing a novel tool and novel methodologies.
A combined low-temperature scanning tunneling microscope/atomic force microscope (LT-STM/AFM) with high throughput and in situ electrospray deposition method will be developed. Chemical resolution will be achieved by novel measurement techniques, in particular the usage of different and novel tip functionalizations and combination with Kelvin probe force microscopy. Elements will be identified using substructure recognition provided by a database that will be erected and by refined theory and simulations.
The developed tools and techniques will be applied to molecules of increasing fragility, complexity, size, and three-dimensionality. In particular samples that are challenging to characterize with conventional methods will be studied. Complex molecular mixtures will be investigated molecule-by-molecule taking advantage of the single-molecule sensitivity. The absolute stereochemistry of molecules will be determined, resolving molecules with multiple stereocenters. The operation of single molecular machines as nanocars and molecular gears will be investigated. Reactive intermediates generated with atomic manipulation will be characterized and their on-surface reactivity will be studied by AFM.
Max ERC Funding
2 000 000 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym Antibodyomics
Project Vaccine profiling and immunodiagnostic discovery by high-throughput antibody repertoire analysis
Researcher (PI) Sai Tota Reddy
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), LS7, ERC-2015-STG
Summary Vaccines and immunodiagnostics have been vital for public health and medicine, however a quantitative molecular understanding of vaccine-induced antibody responses is lacking. Antibody research is currently going through a big-data driven revolution, largely due to progress in next-generation sequencing (NGS) and bioinformatic analysis of antibody repertoires. A main advantage of high-throughput antibody repertoire analysis is that it provides a wealth of quantitative information not possible with other classical methods of antibody analysis (i.e., serum titers); this information includes: clonal distribution and diversity, somatic hypermutation patterns, and lineage tracing. In preliminary work my group has established standardized methods for antibody repertoire NGS, including an experimental-bioinformatic pipeline for error and bias correction that enables highly accurate repertoire sequencing and analysis. The overall goal of this proposal will be to apply high-throughput antibody repertoire analysis for quantitative vaccine profiling and discovery of next-generation immunodiagnostics. Using mouse subunit vaccination as our model system, we will answer for the first time, a fundamental biological question within the context of antibody responses - what is the link between genotype (antibody repertoire) and phenotype (serum antibodies)? We will expand upon this approach for improved rational vaccine design by quantitatively determining the impact of a comprehensive set of subunit vaccination parameters on complete antibody landscapes. Finally, we will develop advanced bioinformatic methods to discover immunodiagnostics based on antibody repertoire sequences. In summary, this proposal lays the foundation for fundamentally new approaches in the quantitative analysis of antibody responses, which long-term will promote the development of next-generation vaccines and immunodiagnostics.
Summary
Vaccines and immunodiagnostics have been vital for public health and medicine, however a quantitative molecular understanding of vaccine-induced antibody responses is lacking. Antibody research is currently going through a big-data driven revolution, largely due to progress in next-generation sequencing (NGS) and bioinformatic analysis of antibody repertoires. A main advantage of high-throughput antibody repertoire analysis is that it provides a wealth of quantitative information not possible with other classical methods of antibody analysis (i.e., serum titers); this information includes: clonal distribution and diversity, somatic hypermutation patterns, and lineage tracing. In preliminary work my group has established standardized methods for antibody repertoire NGS, including an experimental-bioinformatic pipeline for error and bias correction that enables highly accurate repertoire sequencing and analysis. The overall goal of this proposal will be to apply high-throughput antibody repertoire analysis for quantitative vaccine profiling and discovery of next-generation immunodiagnostics. Using mouse subunit vaccination as our model system, we will answer for the first time, a fundamental biological question within the context of antibody responses - what is the link between genotype (antibody repertoire) and phenotype (serum antibodies)? We will expand upon this approach for improved rational vaccine design by quantitatively determining the impact of a comprehensive set of subunit vaccination parameters on complete antibody landscapes. Finally, we will develop advanced bioinformatic methods to discover immunodiagnostics based on antibody repertoire sequences. In summary, this proposal lays the foundation for fundamentally new approaches in the quantitative analysis of antibody responses, which long-term will promote the development of next-generation vaccines and immunodiagnostics.
Max ERC Funding
1 492 586 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym ARTIVISM
Project Art and Activism : Creativity and Performance as Subversive Forms of Political Expression in Super-Diverse Cities
Researcher (PI) Monika Salzbrunn
Host Institution (HI) UNIVERSITE DE LAUSANNE
Call Details Consolidator Grant (CoG), SH5, ERC-2015-CoG
Summary ARTIVISM aims at exploring new artistic forms of political expression under difficult, precarious and/or oppressive conditions. It asks how social actors create belonging and multiple forms of resistance when they use art in activism or activism in art. What kind of alliances do these two forms of social practices generate in super-diverse places, in times of crisis and in precarious situations? Thus, ARTIVISM seeks to understand how social actors engage artistically in order to bring about social, economic and political change. Going beyond former research in urban and migration studies, and beyond the anthropology of art, ARTIVISM focuses on a broad range of artistic tools, styles and means of expression, namely festive events and parades, cartoons and comics and street art. By articulating performance studies, street anthropology and the sociology of celebration with migration and diversity studies, the project challenges former concepts, which took stable social groups for granted and reified them with ethnic lenses. The applied methodology considerably renews the field by bringing together event-, actor- and condition-centred approaches and a multi-sensory framework. Besides its multidisciplinary design, the ground-breaking nature of ARTIVISM lies in the application of the core concepts of performativity and liminality, as well as in an examination of the way to advance and refine these concepts and to create new analytical tools to respond to recent social phenomena. We have developed and tested innovative methods that respond to a postmodern type of fluid and temporary social action: audio-visual ethnography, urban event ethnography, street ethnography, field-crossing, and sensory ethnography (apprenticeship). Therefore, ARTIVISM develops new methods and theories in order to introduce a multi-faceted trans-disciplinary approach to the study of an emerging field of social transformations that is of challenging significance to the social sciences.
Summary
ARTIVISM aims at exploring new artistic forms of political expression under difficult, precarious and/or oppressive conditions. It asks how social actors create belonging and multiple forms of resistance when they use art in activism or activism in art. What kind of alliances do these two forms of social practices generate in super-diverse places, in times of crisis and in precarious situations? Thus, ARTIVISM seeks to understand how social actors engage artistically in order to bring about social, economic and political change. Going beyond former research in urban and migration studies, and beyond the anthropology of art, ARTIVISM focuses on a broad range of artistic tools, styles and means of expression, namely festive events and parades, cartoons and comics and street art. By articulating performance studies, street anthropology and the sociology of celebration with migration and diversity studies, the project challenges former concepts, which took stable social groups for granted and reified them with ethnic lenses. The applied methodology considerably renews the field by bringing together event-, actor- and condition-centred approaches and a multi-sensory framework. Besides its multidisciplinary design, the ground-breaking nature of ARTIVISM lies in the application of the core concepts of performativity and liminality, as well as in an examination of the way to advance and refine these concepts and to create new analytical tools to respond to recent social phenomena. We have developed and tested innovative methods that respond to a postmodern type of fluid and temporary social action: audio-visual ethnography, urban event ethnography, street ethnography, field-crossing, and sensory ethnography (apprenticeship). Therefore, ARTIVISM develops new methods and theories in order to introduce a multi-faceted trans-disciplinary approach to the study of an emerging field of social transformations that is of challenging significance to the social sciences.
Max ERC Funding
1 999 287 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym ATTOLIQ
Project Attosecond X-ray spectroscopy of liquids
Researcher (PI) Hans Jakob WÖRNER
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Consolidator Grant (CoG), PE4, ERC-2017-COG
Summary Charge and energy transfer are the key steps underlying most chemical reactions and biological transformations. The purely electronic dynamics that control such processes take place on attosecond time scales. A complete understanding of these dynamics on the electronic level therefore calls for new experimental methods with attosecond resolution that are applicable to aqueous environments. We propose to combine the element sensitivity of X-ray spectroscopy with attosecond temporal resolution and ultrathin liquid microjets to study electronic dynamics of relevance to chemical, biological and photovoltaic processes. We will build on our recent achievements in demonstrating femtosecond time-resolved measurements in the water, attosecond pho-toelectron spectroscopy on a liquid microjet and measuring and controlling attosecond charge migration in isolated molecules. We will first concentrate on liquid water to study its electronic dynamics following outer-valence ionization, the formation pathway of the solvated electron and the time scales and intermolecular Coulombic decay following inner-valence or core-level ionization. Second, we will turn to solvated species and measure electronic dynamics and charge migration in solvated molecules, transition-metal complexes and pho-toexcited nanoparticles. These goals will be achieved by developing several innovative experimental tech-niques. We will develop a source of isolated attosecond pulses covering the water window (285-538 eV) and combine it with a flat liquid microjet to realize attosecond transient absorption in liquids. We will complement these measurements with attosecond X-ray emission spectroscopy, Auger spectroscopy and a novel hetero-dyne-detected variant of resonant inelastic Raman scattering, exploiting the large bandwidth that is naturally available from attosecond X-ray sources.
Summary
Charge and energy transfer are the key steps underlying most chemical reactions and biological transformations. The purely electronic dynamics that control such processes take place on attosecond time scales. A complete understanding of these dynamics on the electronic level therefore calls for new experimental methods with attosecond resolution that are applicable to aqueous environments. We propose to combine the element sensitivity of X-ray spectroscopy with attosecond temporal resolution and ultrathin liquid microjets to study electronic dynamics of relevance to chemical, biological and photovoltaic processes. We will build on our recent achievements in demonstrating femtosecond time-resolved measurements in the water, attosecond pho-toelectron spectroscopy on a liquid microjet and measuring and controlling attosecond charge migration in isolated molecules. We will first concentrate on liquid water to study its electronic dynamics following outer-valence ionization, the formation pathway of the solvated electron and the time scales and intermolecular Coulombic decay following inner-valence or core-level ionization. Second, we will turn to solvated species and measure electronic dynamics and charge migration in solvated molecules, transition-metal complexes and pho-toexcited nanoparticles. These goals will be achieved by developing several innovative experimental tech-niques. We will develop a source of isolated attosecond pulses covering the water window (285-538 eV) and combine it with a flat liquid microjet to realize attosecond transient absorption in liquids. We will complement these measurements with attosecond X-ray emission spectroscopy, Auger spectroscopy and a novel hetero-dyne-detected variant of resonant inelastic Raman scattering, exploiting the large bandwidth that is naturally available from attosecond X-ray sources.
Max ERC Funding
2 750 000 €
Duration
Start date: 2018-04-01, End date: 2023-03-31
Project acronym BactInd
Project Bacterial cooperation at the individual cell level
Researcher (PI) Rolf Kümmerli
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Consolidator Grant (CoG), LS8, ERC-2015-CoG
Summary All levels of life entail cooperation and conflict. Genes cooperate to build up a functional genome, which can yet be undermined by selfish genetic elements. Humans and animals cooperate to build up societies, which can yet be subverted by cheats. There is a long-standing interest among biologists to comprehend the tug-of-war between cooperation and conflict. Recently, research on bacteria was successful in identifying key factors that can tip the balance in favour or against cooperation. Bacteria cooperate through the formation of protective biofilms, cell-to-cell communication, and the secretion of shareable public goods. However, the advantage of bacteria being fast replicating units, easily cultivatable in high numbers, is also their disadvantage: they are small and imperceptible, such that measures of cooperation typically rely on averaged responses across millions of cells. Thus, we still know very little about bacterial cooperation at the biological relevant scale: the individual cell level. Here, I present research using the secretion of public goods in the opportunistic human pathogen Pseudomonas aeruginosa, to tackle this issue. I will explore new dimensions of bacterial cooperation by asking whether bacteria engage in collective-decision making to find optimal group-level solutions; whether bacteria show division of labour to split up work efficiently; and whether bacteria can distinguish between trustworthy and cheating partners. The proposed research will make two significant contributions. First, it will reveal whether bacteria engage in complex forms of cooperation (collective decision-making, division of labour, partner recognition), which have traditionally been associated with higher organisms. Second, it will provide insights into the evolutionary stability of cooperation – key knowledge for designing therapies that interfere with virulence-inducing public goods in infections, and the design of stable public-good based remediation processes.
Summary
All levels of life entail cooperation and conflict. Genes cooperate to build up a functional genome, which can yet be undermined by selfish genetic elements. Humans and animals cooperate to build up societies, which can yet be subverted by cheats. There is a long-standing interest among biologists to comprehend the tug-of-war between cooperation and conflict. Recently, research on bacteria was successful in identifying key factors that can tip the balance in favour or against cooperation. Bacteria cooperate through the formation of protective biofilms, cell-to-cell communication, and the secretion of shareable public goods. However, the advantage of bacteria being fast replicating units, easily cultivatable in high numbers, is also their disadvantage: they are small and imperceptible, such that measures of cooperation typically rely on averaged responses across millions of cells. Thus, we still know very little about bacterial cooperation at the biological relevant scale: the individual cell level. Here, I present research using the secretion of public goods in the opportunistic human pathogen Pseudomonas aeruginosa, to tackle this issue. I will explore new dimensions of bacterial cooperation by asking whether bacteria engage in collective-decision making to find optimal group-level solutions; whether bacteria show division of labour to split up work efficiently; and whether bacteria can distinguish between trustworthy and cheating partners. The proposed research will make two significant contributions. First, it will reveal whether bacteria engage in complex forms of cooperation (collective decision-making, division of labour, partner recognition), which have traditionally been associated with higher organisms. Second, it will provide insights into the evolutionary stability of cooperation – key knowledge for designing therapies that interfere with virulence-inducing public goods in infections, and the design of stable public-good based remediation processes.
Max ERC Funding
1 994 981 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym BATMAN
Project Development of Quantitative Metrologies to Guide Lithium Ion Battery Manufacturing
Researcher (PI) Vanessa Wood
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), PE8, ERC-2015-STG
Summary Lithium ion batteries offer tremendous potential as an enabling technology for sustainable transportation and development. However, their widespread usage as the energy storage solution for electric mobility and grid-level integration of renewables is impeded by the fact that current state-of-the-art lithium ion batteries have energy densities that are too small, charge- and discharge rates that are too low, and costs that are too high. Highly publicized instances of catastrophic failure of lithium ion batteries raise questions of safety. Understanding the limitations to battery performance and origins of the degradation and failure is highly complex due to the difficulties in studying interrelated processes that take place at different length and time scales in a corrosive environment. In the project, we will (1) develop and implement quantitative methods to study the complex interrelations between structure and electrochemistry occurring at the nano-, micron-, and milli-scales in lithium ion battery active materials and electrodes, (2) conduct systematic experimental studies with our new techniques to understand the origins of performance limitations and to develop design guidelines for achieving high performance and safe batteries, and (3) investigate economically viable engineering solutions based on these guidelines to achieve high performance and safe lithium ion batteries.
Summary
Lithium ion batteries offer tremendous potential as an enabling technology for sustainable transportation and development. However, their widespread usage as the energy storage solution for electric mobility and grid-level integration of renewables is impeded by the fact that current state-of-the-art lithium ion batteries have energy densities that are too small, charge- and discharge rates that are too low, and costs that are too high. Highly publicized instances of catastrophic failure of lithium ion batteries raise questions of safety. Understanding the limitations to battery performance and origins of the degradation and failure is highly complex due to the difficulties in studying interrelated processes that take place at different length and time scales in a corrosive environment. In the project, we will (1) develop and implement quantitative methods to study the complex interrelations between structure and electrochemistry occurring at the nano-, micron-, and milli-scales in lithium ion battery active materials and electrodes, (2) conduct systematic experimental studies with our new techniques to understand the origins of performance limitations and to develop design guidelines for achieving high performance and safe batteries, and (3) investigate economically viable engineering solutions based on these guidelines to achieve high performance and safe lithium ion batteries.
Max ERC Funding
1 500 000 €
Duration
Start date: 2016-05-01, End date: 2021-04-30
Project acronym BEFINE
Project mechanical BEhavior of Fluid-INduced Earthquakes
Researcher (PI) Marie, Estelle, Solange VIOLAY
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Starting Grant (StG), PE10, ERC-2017-STG
Summary Fluids play an important role in fault zone and in earthquakes generation. Fluid pressure reduces the normal effective stress, lowering the frictional strength of the fault, potentially triggering earthquake ruptures. Fluid injection induced earthquakes (FIE) are direct evidence of the effect of fluid pressure on the fault strength. In addition, natural earthquake sequences are often associated with high fluid pressures at seismogenic depths. Although simple in theory, the mechanisms that govern the nucleation, propagation and recurrence of FIEs are poorly constrained, and our ability to assess the seismic hazard that is associated with natural and induced events remains limited. This project aims to enhance our knowledge of FIE mechanisms over entire seismic cycles through multidisciplinary approaches, including the following:
- Set-up and installation of a new and unique rock friction apparatus that is dedicated to the study of FIEs.
- Low strain rate friction experiments (coupled with electrical conductivity measurements) to investigate the influence of fluids on fault creep and earthquake recurrence.
- Intermediate strain rate friction experiments to investigate the effect of fluids on fault stability during earthquake nucleation.
- High strain rate friction experiments to investigate the effect of fluids on fault weakening during earthquake propagation.
- Post-mortem experimental fault analyses with state-of-art microstructural techniques.
- The theoretical friction law will be calibrated with friction experiments and faulted rock microstructural observations.
These steps will produce fundamental discoveries regarding natural earthquakes and tectonic processes and help scientists understand and eventually manage the occurrence of induced seismicity, an increasingly hot topic in geo-engineering. The sustainable exploitation of geo-resources is a key research and technology challenge at the European scale, with a substantial economical and societal impact.
Summary
Fluids play an important role in fault zone and in earthquakes generation. Fluid pressure reduces the normal effective stress, lowering the frictional strength of the fault, potentially triggering earthquake ruptures. Fluid injection induced earthquakes (FIE) are direct evidence of the effect of fluid pressure on the fault strength. In addition, natural earthquake sequences are often associated with high fluid pressures at seismogenic depths. Although simple in theory, the mechanisms that govern the nucleation, propagation and recurrence of FIEs are poorly constrained, and our ability to assess the seismic hazard that is associated with natural and induced events remains limited. This project aims to enhance our knowledge of FIE mechanisms over entire seismic cycles through multidisciplinary approaches, including the following:
- Set-up and installation of a new and unique rock friction apparatus that is dedicated to the study of FIEs.
- Low strain rate friction experiments (coupled with electrical conductivity measurements) to investigate the influence of fluids on fault creep and earthquake recurrence.
- Intermediate strain rate friction experiments to investigate the effect of fluids on fault stability during earthquake nucleation.
- High strain rate friction experiments to investigate the effect of fluids on fault weakening during earthquake propagation.
- Post-mortem experimental fault analyses with state-of-art microstructural techniques.
- The theoretical friction law will be calibrated with friction experiments and faulted rock microstructural observations.
These steps will produce fundamental discoveries regarding natural earthquakes and tectonic processes and help scientists understand and eventually manage the occurrence of induced seismicity, an increasingly hot topic in geo-engineering. The sustainable exploitation of geo-resources is a key research and technology challenge at the European scale, with a substantial economical and societal impact.
Max ERC Funding
1 982 925 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym BETLIV
Project Returning to a Better Place: The (Re)assessment of the ‘Good Life’ in Times of Crisis
Researcher (PI) Valerio SIMONI RIBA
Host Institution (HI) FONDATION POUR L INSTITUT DE HAUTES ETUDES INTERNATIONALES ET DU DEVELOPPEMENT
Call Details Starting Grant (StG), SH5, ERC-2017-STG
Summary What makes for a valuable and good life is a question that many people in the contemporary world ask themselves, yet it is one that social science research has seldom addressed. Only recently have scholars started undertaking inductive comparative research on different notions of the ‘good life’, highlighting socio-cultural variations and calling for a better understanding of the different imaginaries, aspirations and values that guide people in their quest for better living conditions. Research is still lacking, however, on how people themselves evaluate, compare, and put into perspective different visions of good living and their socio-cultural anchorage. This project addresses such questions from an anthropological perspective, proposing an innovative study of how ideals of the good life are articulated, (re)assessed, and related to specific places and contexts as a result of the experience of crisis and migration. The case studies chosen to operationalize these lines of enquiry focus on the phenomenon of return migration, and consist in an analysis of the imaginaries and experience of return by Ecuadorian and Cuban men and women who migrated to Spain, are dissatisfied with their life there, and envisage/carry out the project of going back to their countries of origin (Ecuador and Cuba respectively). The project’s ambition is to bring together and contribute to three main scholarly areas of enquiry: 1) the study of morality, ethics and what counts as ‘good life’, 2) the study of the field of economic practice, its definition, value regimes, and ‘crises’, and 3) the study of migratory aspirations, projects, and trajectories. A multi-sited endeavour, the research is designed in three subprojects carried out in Spain (PhD student), Ecuador (Post-Doc), and Cuba (PI), in which ethnographic methods will be used to provide the first empirically grounded study of the links between notions and experiences of crisis, return migration, and the (re)assessment of good living.
Summary
What makes for a valuable and good life is a question that many people in the contemporary world ask themselves, yet it is one that social science research has seldom addressed. Only recently have scholars started undertaking inductive comparative research on different notions of the ‘good life’, highlighting socio-cultural variations and calling for a better understanding of the different imaginaries, aspirations and values that guide people in their quest for better living conditions. Research is still lacking, however, on how people themselves evaluate, compare, and put into perspective different visions of good living and their socio-cultural anchorage. This project addresses such questions from an anthropological perspective, proposing an innovative study of how ideals of the good life are articulated, (re)assessed, and related to specific places and contexts as a result of the experience of crisis and migration. The case studies chosen to operationalize these lines of enquiry focus on the phenomenon of return migration, and consist in an analysis of the imaginaries and experience of return by Ecuadorian and Cuban men and women who migrated to Spain, are dissatisfied with their life there, and envisage/carry out the project of going back to their countries of origin (Ecuador and Cuba respectively). The project’s ambition is to bring together and contribute to three main scholarly areas of enquiry: 1) the study of morality, ethics and what counts as ‘good life’, 2) the study of the field of economic practice, its definition, value regimes, and ‘crises’, and 3) the study of migratory aspirations, projects, and trajectories. A multi-sited endeavour, the research is designed in three subprojects carried out in Spain (PhD student), Ecuador (Post-Doc), and Cuba (PI), in which ethnographic methods will be used to provide the first empirically grounded study of the links between notions and experiences of crisis, return migration, and the (re)assessment of good living.
Max ERC Funding
1 500 000 €
Duration
Start date: 2018-02-01, End date: 2023-01-31
Project acronym BIGCODE
Project Learning from Big Code: Probabilistic Models, Analysis and Synthesis
Researcher (PI) Martin Vechev
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), PE6, ERC-2015-STG
Summary The goal of this proposal is to fundamentally change the way we build and reason about software. We aim to develop new kinds of statistical programming systems that provide probabilistically likely solutions to tasks that are difficult or impossible to solve with traditional approaches.
These statistical programming systems will be based on probabilistic models of massive codebases (also known as ``Big Code'') built via a combination of advanced programming languages and powerful machine learning and natural language processing techniques. To solve a particular challenge, a statistical programming system will query a probabilistic model, compute the most likely predictions, and present those to the developer.
Based on probabilistic models of ``Big Code'', we propose to investigate new statistical techniques in the context of three fundamental research directions: i) statistical program synthesis where we develop techniques that automatically synthesize and predict new programs, ii) statistical prediction of program properties where we develop new techniques that can predict important facts (e.g., types) about programs, and iii) statistical translation of programs where we investigate new techniques for statistical translation of programs (e.g., from one programming language to another, or to a natural language).
We believe the research direction outlined in this interdisciplinary proposal opens a new and exciting area of computer science. This area will combine sophisticated statistical learning and advanced programming language techniques for building the next-generation statistical programming systems.
We expect the results of this proposal to have an immediate impact upon millions of developers worldwide, triggering a paradigm shift in the way tomorrow's software is built, as well as a long-lasting impact on scientific fields such as machine learning, natural language processing, programming languages and software engineering.
Summary
The goal of this proposal is to fundamentally change the way we build and reason about software. We aim to develop new kinds of statistical programming systems that provide probabilistically likely solutions to tasks that are difficult or impossible to solve with traditional approaches.
These statistical programming systems will be based on probabilistic models of massive codebases (also known as ``Big Code'') built via a combination of advanced programming languages and powerful machine learning and natural language processing techniques. To solve a particular challenge, a statistical programming system will query a probabilistic model, compute the most likely predictions, and present those to the developer.
Based on probabilistic models of ``Big Code'', we propose to investigate new statistical techniques in the context of three fundamental research directions: i) statistical program synthesis where we develop techniques that automatically synthesize and predict new programs, ii) statistical prediction of program properties where we develop new techniques that can predict important facts (e.g., types) about programs, and iii) statistical translation of programs where we investigate new techniques for statistical translation of programs (e.g., from one programming language to another, or to a natural language).
We believe the research direction outlined in this interdisciplinary proposal opens a new and exciting area of computer science. This area will combine sophisticated statistical learning and advanced programming language techniques for building the next-generation statistical programming systems.
We expect the results of this proposal to have an immediate impact upon millions of developers worldwide, triggering a paradigm shift in the way tomorrow's software is built, as well as a long-lasting impact on scientific fields such as machine learning, natural language processing, programming languages and software engineering.
Max ERC Funding
1 500 000 €
Duration
Start date: 2016-04-01, End date: 2021-03-31
Project acronym BINDING FIBRES
Project Soluble dietary fibre: unraveling how weak bonds have a strong impact on function
Researcher (PI) Laura Nyström
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), LS9, ERC-2015-STG
Summary Dietary fibres are recognized for their health promoting properties; nevertheless, many of the physicochemical mechanisms behind these effects remain poorly understood. While it is understood that dietary fibres can associate with small molecules influencing, both positively or negatively their absorption, the molecular mechanism, by which these associations take place, have yet to be elucidated We propose a study of the binding in soluble dietary fibres at a molecular level to establish binding constants for various fibres and nutritionally relevant ligands. The interactions between fibres and target compounds may be quite weak, but still have a major impact on the bioavailability. To gain insight to the binding mechanisms at a level of detail that has not earlier been achieved, we will apply novel combinations of analytical techniques (MS, NMR, EPR) and both natural as well as synthetic probes to elucidate the associations in these complexes from macromolecular to atomic level. Glucans, xyloglucans and galactomannans will serve as model soluble fibres, representative of real food systems, allowing us to determine their binding constants with nutritionally relevant micronutrients, such as monosaccharides, bile acids, and metals. Furthermore, we will examine supramolecular interactions between fibre strands to evaluate possible contribution of several fibre strands to the micronutrient associations. At the atomic level, we will use complementary spectroscopies to identify the functional groups and atoms involved in the bonds between fibres and the ligands. The proposal describes a unique approach to quantify binding of small molecules by dietary fibres, which can be translated to polysaccharide interactions with ligands in a broad range of biological systems and disciplines. The findings from this study may further allow us to predictably utilize fibres in functional foods, which can have far-reaching consequences in human nutrition, and thereby also public health.
Summary
Dietary fibres are recognized for their health promoting properties; nevertheless, many of the physicochemical mechanisms behind these effects remain poorly understood. While it is understood that dietary fibres can associate with small molecules influencing, both positively or negatively their absorption, the molecular mechanism, by which these associations take place, have yet to be elucidated We propose a study of the binding in soluble dietary fibres at a molecular level to establish binding constants for various fibres and nutritionally relevant ligands. The interactions between fibres and target compounds may be quite weak, but still have a major impact on the bioavailability. To gain insight to the binding mechanisms at a level of detail that has not earlier been achieved, we will apply novel combinations of analytical techniques (MS, NMR, EPR) and both natural as well as synthetic probes to elucidate the associations in these complexes from macromolecular to atomic level. Glucans, xyloglucans and galactomannans will serve as model soluble fibres, representative of real food systems, allowing us to determine their binding constants with nutritionally relevant micronutrients, such as monosaccharides, bile acids, and metals. Furthermore, we will examine supramolecular interactions between fibre strands to evaluate possible contribution of several fibre strands to the micronutrient associations. At the atomic level, we will use complementary spectroscopies to identify the functional groups and atoms involved in the bonds between fibres and the ligands. The proposal describes a unique approach to quantify binding of small molecules by dietary fibres, which can be translated to polysaccharide interactions with ligands in a broad range of biological systems and disciplines. The findings from this study may further allow us to predictably utilize fibres in functional foods, which can have far-reaching consequences in human nutrition, and thereby also public health.
Max ERC Funding
1 500 000 €
Duration
Start date: 2016-04-01, End date: 2021-03-31
Project acronym BioBarPro
Project A Hot-Spot Bio-Barcode Strategy for Prognostic Biomarkers In Colorectal Cancer
Researcher (PI) Shana Sturla
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Proof of Concept (PoC), ERC-2015-PoC, ERC-2015-PoC
Summary Colorectal cancer (CRC) is caused by alterations in genes that regulate tissue growth and the risk of developing CRC is influenced by a combination of environmental and genetic factors. Although CRC is often preventable by removing precursor lesions, screening efforts have been hampered by low participation rates and by performance limitations of the screening tools themselves. Detection of blood in faeces is currently the most common screening tool, while stool DNA testing of molecular markers has emerged as a biologically rational and user-friendly strategy for the non-invasive detection of CRC and critical precursor lesions. This advance has significantly increased performance in detecting CRC, but still more than half of the precancerous lesions cannot be detected. The stool DNA test performance for detecting precancerous lesions is expected to be improved substantively by including a completely new type of biomarker, those formed earlier than genetic mutations in the process of carcinogenesis. Such biomarkers are DNA adducts; DNA molecules bound to chemicals. If not repaired, these DNA adducts generate mutations. Herein, we propose to expand an ERC-funded research result into a kit for measuring CRC-initiating DNA adducts in a stool sample. This kit will enable personalized feedback that quantitatively integrates environmental and genetic factors in colon-cancer associated DNA damage. We have filed a patent application for the chemical basis of the technology and have partnered with an ETH spin-off for the scientific development of our existing proof of principle assay to a prototype kit. In parallel to the scientific work, during the Proof of Concept phase, we will address a phase of the overall commercialization plan that involves licensing the technology to a business partner in the life sciences sector.
Summary
Colorectal cancer (CRC) is caused by alterations in genes that regulate tissue growth and the risk of developing CRC is influenced by a combination of environmental and genetic factors. Although CRC is often preventable by removing precursor lesions, screening efforts have been hampered by low participation rates and by performance limitations of the screening tools themselves. Detection of blood in faeces is currently the most common screening tool, while stool DNA testing of molecular markers has emerged as a biologically rational and user-friendly strategy for the non-invasive detection of CRC and critical precursor lesions. This advance has significantly increased performance in detecting CRC, but still more than half of the precancerous lesions cannot be detected. The stool DNA test performance for detecting precancerous lesions is expected to be improved substantively by including a completely new type of biomarker, those formed earlier than genetic mutations in the process of carcinogenesis. Such biomarkers are DNA adducts; DNA molecules bound to chemicals. If not repaired, these DNA adducts generate mutations. Herein, we propose to expand an ERC-funded research result into a kit for measuring CRC-initiating DNA adducts in a stool sample. This kit will enable personalized feedback that quantitatively integrates environmental and genetic factors in colon-cancer associated DNA damage. We have filed a patent application for the chemical basis of the technology and have partnered with an ETH spin-off for the scientific development of our existing proof of principle assay to a prototype kit. In parallel to the scientific work, during the Proof of Concept phase, we will address a phase of the overall commercialization plan that involves licensing the technology to a business partner in the life sciences sector.
Max ERC Funding
150 000 €
Duration
Start date: 2015-12-01, End date: 2017-05-31
Project acronym BIOGEOS
Project Bio-mediated Geo-material Strengthening for engineering applications
Researcher (PI) Lyesse LALOUI
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE8, ERC-2017-ADG
Summary Given the increasing scarcity of suitable land for development, soil strengthening technologies have emerged in the past decade and go hand-in-hand with the implementation of the majority of foundation solutions. The goal is to alter the soil structure and its mechanical properties for ultimately securing the integrity of structures. The BIOGEOS project puts the focus on bio-mediated soil improvement, which falls within the broader framework of multi-physical processes in geo-mechanics. The goal of the project is to engineer a novel, natural material under controlled processes, for ultimately providing solutions to real problems in the geo-engineering and geo-energy fields by advancing knowledge around complex multi-physical phenomena in porous media. The bio-cemented geo-material, which is produced by carefully integrating the metabolic activity of native soil bacteria, is produced through the bio-mineralization of calcite bonds, which act as natural cementation for endowing the subsurface with real cohesion and increased resistance. A principal characteristic of the project is its multi-scale approach through advanced experimentation to identify the main physical mechanisms involved in the formation of the bio-mineralized bonds and their behaviour under mechanical loading. The development of such a bio-mediated technology will lead to innovative applications in a series of engineering problems such as the restoration of weak foundations, seismic retrofitting, erosion protection, and the enhancement of heat transfer in thermo-active geo-structures. The project foresees to adopt multiple loading conditions for its laboratory characterization and ultimately pass to the large experimental scale. BIOGEOS further aims to provide new knowledge around the way we perceive materials in relation with their micro-structure by implementing state-of-the-art inspection of the material’s structure in 3D space and subsequent prediction of their behaviour through numerical tools.
Summary
Given the increasing scarcity of suitable land for development, soil strengthening technologies have emerged in the past decade and go hand-in-hand with the implementation of the majority of foundation solutions. The goal is to alter the soil structure and its mechanical properties for ultimately securing the integrity of structures. The BIOGEOS project puts the focus on bio-mediated soil improvement, which falls within the broader framework of multi-physical processes in geo-mechanics. The goal of the project is to engineer a novel, natural material under controlled processes, for ultimately providing solutions to real problems in the geo-engineering and geo-energy fields by advancing knowledge around complex multi-physical phenomena in porous media. The bio-cemented geo-material, which is produced by carefully integrating the metabolic activity of native soil bacteria, is produced through the bio-mineralization of calcite bonds, which act as natural cementation for endowing the subsurface with real cohesion and increased resistance. A principal characteristic of the project is its multi-scale approach through advanced experimentation to identify the main physical mechanisms involved in the formation of the bio-mineralized bonds and their behaviour under mechanical loading. The development of such a bio-mediated technology will lead to innovative applications in a series of engineering problems such as the restoration of weak foundations, seismic retrofitting, erosion protection, and the enhancement of heat transfer in thermo-active geo-structures. The project foresees to adopt multiple loading conditions for its laboratory characterization and ultimately pass to the large experimental scale. BIOGEOS further aims to provide new knowledge around the way we perceive materials in relation with their micro-structure by implementing state-of-the-art inspection of the material’s structure in 3D space and subsequent prediction of their behaviour through numerical tools.
Max ERC Funding
2 497 115 €
Duration
Start date: 2018-11-01, End date: 2023-10-31
Project acronym BioMeTRe
Project Biophysical mechanisms of long-range transcriptional regulation
Researcher (PI) Luca GIORGETTI
Host Institution (HI) FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH FONDATION
Call Details Starting Grant (StG), LS2, ERC-2017-STG
Summary In mammals, transcriptional control of many genes relies on cis-regulatory elements such as enhancers, which are often located tens to hundreds of kilobases away from their cognate promoters. Functional interactions between distal regulatory elements and target promoters require mutual physical proximity, which is linked to the three-dimensional structure of the chromatin fiber. Chromosome conformation capture studies revealed that chromosomes are partitioned into Topologically Associating Domains (TADs), sub-megabase domains of preferential physical interactions of the chromatin fiber. Genetic evidence showed that TAD boundaries restrict the genomic range of enhancer-promoter communication, and that interactions between regulatory sequences within TADs are further fine-tuned by smaller-scale structures. However, the mechanistic details of how physical interactions translate into transcriptional outputs are totally unknown. Here we propose to explore the biophysical mechanisms that link chromosome conformation and long-range transcriptional regulation using molecular biology, genetic engineering, single-cell experiments and physical modeling. We will measure chromosomal interactions in single cells and in time using a novel method that relies on an enzymatic process in vivo. Genetic engineering will be used to establish a cell system that allows quantitative measurement of how enhancer-promoter interactions relate to transcription at the population and single-cell levels, and to test the effects of perturbations without confounding effects. Finally, we will develop physical models of promoter operation in the presence of distal enhancers, which will be used to interpret the experimental data and formulate new testable predictions. With this integrated approach we aim at providing an entirely new layer of description of the general principles underlying transcriptional control, which could establish new paradigms for research in epigenetics and gene regulation.
Summary
In mammals, transcriptional control of many genes relies on cis-regulatory elements such as enhancers, which are often located tens to hundreds of kilobases away from their cognate promoters. Functional interactions between distal regulatory elements and target promoters require mutual physical proximity, which is linked to the three-dimensional structure of the chromatin fiber. Chromosome conformation capture studies revealed that chromosomes are partitioned into Topologically Associating Domains (TADs), sub-megabase domains of preferential physical interactions of the chromatin fiber. Genetic evidence showed that TAD boundaries restrict the genomic range of enhancer-promoter communication, and that interactions between regulatory sequences within TADs are further fine-tuned by smaller-scale structures. However, the mechanistic details of how physical interactions translate into transcriptional outputs are totally unknown. Here we propose to explore the biophysical mechanisms that link chromosome conformation and long-range transcriptional regulation using molecular biology, genetic engineering, single-cell experiments and physical modeling. We will measure chromosomal interactions in single cells and in time using a novel method that relies on an enzymatic process in vivo. Genetic engineering will be used to establish a cell system that allows quantitative measurement of how enhancer-promoter interactions relate to transcription at the population and single-cell levels, and to test the effects of perturbations without confounding effects. Finally, we will develop physical models of promoter operation in the presence of distal enhancers, which will be used to interpret the experimental data and formulate new testable predictions. With this integrated approach we aim at providing an entirely new layer of description of the general principles underlying transcriptional control, which could establish new paradigms for research in epigenetics and gene regulation.
Max ERC Funding
1 500 000 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym BIOMOL. SIMULATION
Project Development of multi-scale molecular models, force fields and computer software for biomolecular simulation
Researcher (PI) Willem Frederik Van Gunsteren
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE4, ERC-2008-AdG
Summary During the past decades the PI has helped shape the research field of computer simulation of biomolecular systems at the atomic level. He has carried out one of the first molecular dynamics (MD) simulations of proteins, and has since then contributed many different methodological improvements and developed one of the major atomic-level force fields for simulations of proteins, carbohydrates, nucleotides and lipids. Methodology and force field have been implemented in a set of programs called GROMOS (GROningen MOlecular Simulation package), which is currently used in hundreds of academic and industrial research groups from over 50 countries on all continents. It is proposed to develop a next generation of molecular models, force fields, multi-scaling simulation methodology and software for biomolecular simulations which is at least an order of magnitude more accurate in terms of energetics, and which is 1000 times more efficient through the use of coarse-grained molecular models than the currently available software and models.
Summary
During the past decades the PI has helped shape the research field of computer simulation of biomolecular systems at the atomic level. He has carried out one of the first molecular dynamics (MD) simulations of proteins, and has since then contributed many different methodological improvements and developed one of the major atomic-level force fields for simulations of proteins, carbohydrates, nucleotides and lipids. Methodology and force field have been implemented in a set of programs called GROMOS (GROningen MOlecular Simulation package), which is currently used in hundreds of academic and industrial research groups from over 50 countries on all continents. It is proposed to develop a next generation of molecular models, force fields, multi-scaling simulation methodology and software for biomolecular simulations which is at least an order of magnitude more accurate in terms of energetics, and which is 1000 times more efficient through the use of coarse-grained molecular models than the currently available software and models.
Max ERC Funding
1 320 000 €
Duration
Start date: 2008-11-01, End date: 2014-09-30
Project acronym Bits2Cosmology
Project Time-domain Gibbs sampling: From bits to inflationary gravitational waves
Researcher (PI) Hans Kristian ERIKSEN
Host Institution (HI) UNIVERSITETET I OSLO
Call Details Consolidator Grant (CoG), PE9, ERC-2017-COG
Summary The detection of primordial gravity waves created during the Big Bang ranks among the greatest potential intellectual achievements in modern science. During the last few decades, the instrumental progress necessary to achieve this has been nothing short of breathtaking, and we today are able to measure the microwave sky with better than one-in-a-million precision. However, from the latest ultra-sensitive experiments such as BICEP2 and Planck, it is clear that instrumental sensitivity alone will not be sufficient to make a robust detection of gravitational waves. Contamination in the form of astrophysical radiation from the Milky Way, for instance thermal dust and synchrotron radiation, obscures the cosmological signal by orders of magnitude. Even more critically, though, are second-order interactions between this radiation and the instrument characterization itself that lead to a highly non-linear and complicated problem.
I propose a ground-breaking solution to this problem that allows for joint estimation of cosmological parameters, astrophysical components, and instrument specifications. The engine of this method is called Gibbs sampling, which I have already applied extremely successfully to basic CMB component separation. The new and ciritical step is to apply this method to raw time-ordered observations observed directly by the instrument, as opposed to pre-processed frequency maps. While representing a ~100-fold increase in input data volume, this step is unavoidable in order to break through the current foreground-induced systematics floor. I will apply this method to the best currently available and future data sets (WMAP, Planck, SPIDER and LiteBIRD), and thereby derive the world's tightest constraint on the amplitude of inflationary gravitational waves. Additionally, the resulting ancillary science in the form of robust cosmological parameters and astrophysical component maps will represent the state-of-the-art in observational cosmology in years to come.
Summary
The detection of primordial gravity waves created during the Big Bang ranks among the greatest potential intellectual achievements in modern science. During the last few decades, the instrumental progress necessary to achieve this has been nothing short of breathtaking, and we today are able to measure the microwave sky with better than one-in-a-million precision. However, from the latest ultra-sensitive experiments such as BICEP2 and Planck, it is clear that instrumental sensitivity alone will not be sufficient to make a robust detection of gravitational waves. Contamination in the form of astrophysical radiation from the Milky Way, for instance thermal dust and synchrotron radiation, obscures the cosmological signal by orders of magnitude. Even more critically, though, are second-order interactions between this radiation and the instrument characterization itself that lead to a highly non-linear and complicated problem.
I propose a ground-breaking solution to this problem that allows for joint estimation of cosmological parameters, astrophysical components, and instrument specifications. The engine of this method is called Gibbs sampling, which I have already applied extremely successfully to basic CMB component separation. The new and ciritical step is to apply this method to raw time-ordered observations observed directly by the instrument, as opposed to pre-processed frequency maps. While representing a ~100-fold increase in input data volume, this step is unavoidable in order to break through the current foreground-induced systematics floor. I will apply this method to the best currently available and future data sets (WMAP, Planck, SPIDER and LiteBIRD), and thereby derive the world's tightest constraint on the amplitude of inflationary gravitational waves. Additionally, the resulting ancillary science in the form of robust cosmological parameters and astrophysical component maps will represent the state-of-the-art in observational cosmology in years to come.
Max ERC Funding
1 999 205 €
Duration
Start date: 2018-04-01, End date: 2023-03-31
Project acronym BSMOXFORD
Project Physics Beyond the Standard Model at the LHC and with Atom Interferometers
Researcher (PI) Savas Dimopoulos
Host Institution (HI) EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH
Call Details Advanced Grant (AdG), PE2, ERC-2008-AdG
Summary Elementary particle physics is entering a spectacular new era in which experiments at the Large Hadron Collider (LHC) at CERN will soon start probing some of the deepest questions in physics, such as: Why is gravity so weak? Do elementary particles have substructure? What is the origin of mass? Are there new dimensions? Can we produce black holes in the lab? Could there be other universes with different physical laws? While the LHC pushes the energy frontier, the unprecedented precision of Atom Interferometry, has pointed me to a new tool for fundamental physics. These experiments based on the quantum interference of atoms can test General Relativity on the surface of the Earth, detect gravity waves, and test short-distance gravity, charge quantization, and quantum mechanics with unprecedented precision in the next decade. This ERC Advanced grant proposal is aimed at setting up a world-leading European center for development of a deeper theory of fundamental physics. The next 10 years is the optimal time for such studies to benefit from the wealth of new data that will emerge from the LHC, astrophysical observations and atom interferometry. This is a once-in-a-generation opportunity for making ground-breaking progress, and will open up many new research horizons.
Summary
Elementary particle physics is entering a spectacular new era in which experiments at the Large Hadron Collider (LHC) at CERN will soon start probing some of the deepest questions in physics, such as: Why is gravity so weak? Do elementary particles have substructure? What is the origin of mass? Are there new dimensions? Can we produce black holes in the lab? Could there be other universes with different physical laws? While the LHC pushes the energy frontier, the unprecedented precision of Atom Interferometry, has pointed me to a new tool for fundamental physics. These experiments based on the quantum interference of atoms can test General Relativity on the surface of the Earth, detect gravity waves, and test short-distance gravity, charge quantization, and quantum mechanics with unprecedented precision in the next decade. This ERC Advanced grant proposal is aimed at setting up a world-leading European center for development of a deeper theory of fundamental physics. The next 10 years is the optimal time for such studies to benefit from the wealth of new data that will emerge from the LHC, astrophysical observations and atom interferometry. This is a once-in-a-generation opportunity for making ground-breaking progress, and will open up many new research horizons.
Max ERC Funding
2 200 000 €
Duration
Start date: 2009-05-01, End date: 2014-04-30
Project acronym CAMERA
Project Characterizing Adaptation and Migration Events with Modern and Ancient Genomes
Researcher (PI) Anna-Sapfo Malaspinas
Host Institution (HI) UNIVERSITAET BERN
Call Details Starting Grant (StG), LS8, ERC-2015-STG
Summary BACKGROUND Ancient DNA research has recently entered the genomics era. Performing “ancient population genomics” is now technically possible. Utilizing the temporal aspect of this new data, we can address fundamental evolutionary questions such as the amount of selection acting on the genome or the mode and tempo of the colonization of the world. AIMS The overall goal of the proposed research is to (i) generate and analyse data to answer two long standing questions in human evolution: understanding the molecular basis of human adaptation to high altitude and investigating the timing of the Polynesian-South American contact, (ii) develop statistical approaches that combine ancient and modern genetic data to estimate the timing and the intensity of a selective sweep and an admixture event. METHODOLOGY Application: We will collect, date and DNA sequence human remains. Combining the ancient genetic data, 14C dates with existing modern genomic data will allow us to increase the resolution as to the timing of the adaptive and the admixture event, respectively, while generating unique datasets. Theory: We will build on existing methods based on one-locus classical population genetic models to develop tools to analyse whole genome time serial data. RELEVANCE Ecological: The results will address the fundamental question of how much of the human genome is undergoing selection, better characterize one of the textbook examples of adaptation in humans and contribute to our understanding of the peopling of the Americas. Medical: We will gain insights into the fundamental stress physiology experienced at high altitude and therefore into altitude-related illnesses. Methodological: The methods developed in this project will not only benefit the growing field of ancient genomics but also other fields where data is collected in a temporal manner, such as experimental evolution and epidemiology
Summary
BACKGROUND Ancient DNA research has recently entered the genomics era. Performing “ancient population genomics” is now technically possible. Utilizing the temporal aspect of this new data, we can address fundamental evolutionary questions such as the amount of selection acting on the genome or the mode and tempo of the colonization of the world. AIMS The overall goal of the proposed research is to (i) generate and analyse data to answer two long standing questions in human evolution: understanding the molecular basis of human adaptation to high altitude and investigating the timing of the Polynesian-South American contact, (ii) develop statistical approaches that combine ancient and modern genetic data to estimate the timing and the intensity of a selective sweep and an admixture event. METHODOLOGY Application: We will collect, date and DNA sequence human remains. Combining the ancient genetic data, 14C dates with existing modern genomic data will allow us to increase the resolution as to the timing of the adaptive and the admixture event, respectively, while generating unique datasets. Theory: We will build on existing methods based on one-locus classical population genetic models to develop tools to analyse whole genome time serial data. RELEVANCE Ecological: The results will address the fundamental question of how much of the human genome is undergoing selection, better characterize one of the textbook examples of adaptation in humans and contribute to our understanding of the peopling of the Americas. Medical: We will gain insights into the fundamental stress physiology experienced at high altitude and therefore into altitude-related illnesses. Methodological: The methods developed in this project will not only benefit the growing field of ancient genomics but also other fields where data is collected in a temporal manner, such as experimental evolution and epidemiology
Max ERC Funding
1 498 478 €
Duration
Start date: 2016-08-01, End date: 2021-07-31
Project acronym CARBOTIGHT
Project Diffusion Barrier Layers and Anticorrosive Coatings from Functional Carbon Nanosheets
Researcher (PI) Holger FRAUENRATH
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Proof of Concept (PoC), PC1, ERC-2015-PoC
Summary Materials with excellent diffusion barrier properties are highly relevant for packaging applications (food, pharmaceutics), sealing (car tires), protective encapsulation (microelectronics, photovoltaics, displays), and anticorrosive coatings (automotive). In all these fields of application, there is a strong technological demand for more effective, less costly, and environmentally benign solutions, which constitutes a significant business opportunity. The proposed project aims to develop novel barrier layers and anticorrosive coatings based on functionalized carbon nanosheets that are prepared from reactive, carbon-rich molecular precursors with chemical functional groups that provide surface-specific binding and adhesion. These materials combine the excellent barrier and anticorrosive properties of atomically dense carbon or inorganic thin film coatings with the tailored surface properties of monolayer coatings. Moreover, their preparation will be compatible with scalable and inexpensive solution-phase processing methods such as painting, spraying, or printing, followed by UV curing. The goal of the proposed project is to provide technology demonstrators for a diffusion barrier layer aimed at packaging applications, as well as for a wear-resistant, anti-corrosive coating on a metal surface.
Summary
Materials with excellent diffusion barrier properties are highly relevant for packaging applications (food, pharmaceutics), sealing (car tires), protective encapsulation (microelectronics, photovoltaics, displays), and anticorrosive coatings (automotive). In all these fields of application, there is a strong technological demand for more effective, less costly, and environmentally benign solutions, which constitutes a significant business opportunity. The proposed project aims to develop novel barrier layers and anticorrosive coatings based on functionalized carbon nanosheets that are prepared from reactive, carbon-rich molecular precursors with chemical functional groups that provide surface-specific binding and adhesion. These materials combine the excellent barrier and anticorrosive properties of atomically dense carbon or inorganic thin film coatings with the tailored surface properties of monolayer coatings. Moreover, their preparation will be compatible with scalable and inexpensive solution-phase processing methods such as painting, spraying, or printing, followed by UV curing. The goal of the proposed project is to provide technology demonstrators for a diffusion barrier layer aimed at packaging applications, as well as for a wear-resistant, anti-corrosive coating on a metal surface.
Max ERC Funding
149 500 €
Duration
Start date: 2016-02-01, End date: 2017-01-31
Project acronym CATACOAT
Project Nanostructured catalyst overcoats for renewable chemical production from biomass
Researcher (PI) Jeremy Scott LUTERBACHER
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Starting Grant (StG), PE8, ERC-2017-STG
Summary In the CATACOAT project, we will develop layer-by-layer solution-processed catalyst overcoating methods, which will result in catalysts that have both targeted and broad impacts. We will produce highly active, stable and selective catalysts for the upgrading of lignin – the largest natural source of aromatic chemicals – into commodity chemicals, which will have an important targeted impact. The broader impact of our work will lie in the production of catalytic materials with unprecedented control over the active site architecture.
There is an urgent need to provide these cheap, stable, selective, and highly active catalysts for renewable molecule production. Thanks to its availability and relatively low cost, lignocellulosic biomass is an attractive source of renewable carbon. However, unlike petroleum, biomass-derived molecules are highly oxygenated, and often produced in dilute-aqueous streams. Heterogeneous catalysts – the workhorses of the petrochemical industry – are sensitive to water and contain many metals that easily sinter and leach in liquid-phase conditions. The production of renewable chemicals from biomass, especially valuable aromatics, often requires expensive platinum group metals and suffers from low selectivity.
Catalyst overcoating presents a potential solution to this problem. Recent breakthroughs using catalyst overcoating with atomic layer deposition (ALD) showed that base metal catalysts can be stabilized against sintering and leaching in liquid phase conditions. However, ALD creates dramatic drops in activity due to excessive coverage, and forms an overcoat that cannot be tuned.
Our materials will feature the controlled placement of metal sites (including single atoms), several oxide sites, and even molecular imprints with sub-nanometer precision within highly accessible nanocavities. We anticipate that such materials will create unprecedented opportunities for reducing cost and increasing sustainability in the chemical industry and beyond.
Summary
In the CATACOAT project, we will develop layer-by-layer solution-processed catalyst overcoating methods, which will result in catalysts that have both targeted and broad impacts. We will produce highly active, stable and selective catalysts for the upgrading of lignin – the largest natural source of aromatic chemicals – into commodity chemicals, which will have an important targeted impact. The broader impact of our work will lie in the production of catalytic materials with unprecedented control over the active site architecture.
There is an urgent need to provide these cheap, stable, selective, and highly active catalysts for renewable molecule production. Thanks to its availability and relatively low cost, lignocellulosic biomass is an attractive source of renewable carbon. However, unlike petroleum, biomass-derived molecules are highly oxygenated, and often produced in dilute-aqueous streams. Heterogeneous catalysts – the workhorses of the petrochemical industry – are sensitive to water and contain many metals that easily sinter and leach in liquid-phase conditions. The production of renewable chemicals from biomass, especially valuable aromatics, often requires expensive platinum group metals and suffers from low selectivity.
Catalyst overcoating presents a potential solution to this problem. Recent breakthroughs using catalyst overcoating with atomic layer deposition (ALD) showed that base metal catalysts can be stabilized against sintering and leaching in liquid phase conditions. However, ALD creates dramatic drops in activity due to excessive coverage, and forms an overcoat that cannot be tuned.
Our materials will feature the controlled placement of metal sites (including single atoms), several oxide sites, and even molecular imprints with sub-nanometer precision within highly accessible nanocavities. We anticipate that such materials will create unprecedented opportunities for reducing cost and increasing sustainability in the chemical industry and beyond.
Max ERC Funding
1 785 195 €
Duration
Start date: 2017-12-01, End date: 2022-11-30
Project acronym CausalStats
Project Statistics, Prediction and Causality for Large-Scale Data
Researcher (PI) Peter Lukas Bühlmann
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE1, ERC-2017-ADG
Summary Understanding cause-effect relationships between variables is of great interest in many fields of science. However, causal inference from data is much more ambitious and difficult than inferring (undirected) measures of association such as correlations, partial correlations or multivariate regression coefficients, mainly because of fundamental identifiability
problems. A main objective of the proposal is to exploit advantages from large-scale heterogeneous data for causal inference where heterogeneity arises from different experimental conditions or different unknown sub-populations. A key idea is to consider invariance or stability across different experimental conditions of certain conditional probability distributions: the invariants correspond on the one hand to (properly defined) causal variables which are of main interest in causality; andon the other hand, they correspond to the features for constructing powerful predictions for new scenarios which are unobserved in the data (new probability distributions). This opens novel perspectives: causal inference
can be phrased as a prediction problem of a certain kind, and vice versa, new prediction methods which work well across different scenarios (unobserved in the data) should be based on or regularized towards causal variables. Fundamental identifiability limits will become weaker with increased degree of heterogeneity, as we expect in large-scale data. The topic is essentially unexplored, yet it opens new avenues for causal inference, structural equation and graphical modeling, and robust prediction based on large-scale complex data. We will develop mathematical theory, statistical methodology and efficient algorithms; and we will also work and collaborate on major application problems such as inferring causal effects (i.e., total intervention effects) from gene knock-out or RNA interference perturbation experiments, genome-wide association studies and novel prediction tasks in economics.
Summary
Understanding cause-effect relationships between variables is of great interest in many fields of science. However, causal inference from data is much more ambitious and difficult than inferring (undirected) measures of association such as correlations, partial correlations or multivariate regression coefficients, mainly because of fundamental identifiability
problems. A main objective of the proposal is to exploit advantages from large-scale heterogeneous data for causal inference where heterogeneity arises from different experimental conditions or different unknown sub-populations. A key idea is to consider invariance or stability across different experimental conditions of certain conditional probability distributions: the invariants correspond on the one hand to (properly defined) causal variables which are of main interest in causality; andon the other hand, they correspond to the features for constructing powerful predictions for new scenarios which are unobserved in the data (new probability distributions). This opens novel perspectives: causal inference
can be phrased as a prediction problem of a certain kind, and vice versa, new prediction methods which work well across different scenarios (unobserved in the data) should be based on or regularized towards causal variables. Fundamental identifiability limits will become weaker with increased degree of heterogeneity, as we expect in large-scale data. The topic is essentially unexplored, yet it opens new avenues for causal inference, structural equation and graphical modeling, and robust prediction based on large-scale complex data. We will develop mathematical theory, statistical methodology and efficient algorithms; and we will also work and collaborate on major application problems such as inferring causal effects (i.e., total intervention effects) from gene knock-out or RNA interference perturbation experiments, genome-wide association studies and novel prediction tasks in economics.
Max ERC Funding
2 184 375 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym CELLFUSION
Project Molecular dissection of the mechanisms of cell-cell fusion in the fission yeast
Researcher (PI) Sophie Geneviève Elisabeth Martin Benton
Host Institution (HI) UNIVERSITE DE LAUSANNE
Call Details Consolidator Grant (CoG), LS3, ERC-2015-CoG
Summary Cell fusion is critical for fertilization and development, for instance underlying muscle or bone formation. Cell fusion may also play important roles in regeneration and cancer. A conceptual understanding is emerging that cell fusion requires cell-cell communication, polarization of the cells towards each other, and assembly of a fusion machinery, in which an actin-based structure promotes membrane juxtaposition and fusogenic factors drive membrane fusion. However, in no single system have the molecular nature of all these parts been described, and thus the molecular basis of cell fusion remains poorly understood.
This proposal aims to depict the complete fusion process in a single organism, using the simple yeast model Schizosaccharomyces pombe, which has a long track record of discoveries in fundamental cellular processes. These haploid cells, which fuse to generate a diploid zygote, use highly conserved mechanisms of cell-cell communication (through pheromones and GPCR signaling), cell polarization (centred around the small GTPase Cdc42) and fusion. Indeed, we recently showed that these cells assemble an actin-based fusion structure, dubbed the actin fusion focus. Our five aims probe the molecular nature of, and the links between, signaling, polarization and the fusion machinery from initiation to termination of the process. These are:
1: To define the roles and feedback regulation of Cdc42 during cell fusion
2: To understand the molecular mechanisms of actin fusion focus formation
3: To identify the fusogen(s) promoting membrane fusion
4: To probe the GPCR signal for fusion initiation
5: To define the mechanism of fusion termination
By combining genetic, optogenetic, biochemical, live-imaging, synthetic and modeling approaches, this project will bring a molecular and conceptual understanding of cell fusion. This work will have far-ranging relevance for cell polarization, cytoskeletal organization, cell signalling and communication, and cell fate regulation.
Summary
Cell fusion is critical for fertilization and development, for instance underlying muscle or bone formation. Cell fusion may also play important roles in regeneration and cancer. A conceptual understanding is emerging that cell fusion requires cell-cell communication, polarization of the cells towards each other, and assembly of a fusion machinery, in which an actin-based structure promotes membrane juxtaposition and fusogenic factors drive membrane fusion. However, in no single system have the molecular nature of all these parts been described, and thus the molecular basis of cell fusion remains poorly understood.
This proposal aims to depict the complete fusion process in a single organism, using the simple yeast model Schizosaccharomyces pombe, which has a long track record of discoveries in fundamental cellular processes. These haploid cells, which fuse to generate a diploid zygote, use highly conserved mechanisms of cell-cell communication (through pheromones and GPCR signaling), cell polarization (centred around the small GTPase Cdc42) and fusion. Indeed, we recently showed that these cells assemble an actin-based fusion structure, dubbed the actin fusion focus. Our five aims probe the molecular nature of, and the links between, signaling, polarization and the fusion machinery from initiation to termination of the process. These are:
1: To define the roles and feedback regulation of Cdc42 during cell fusion
2: To understand the molecular mechanisms of actin fusion focus formation
3: To identify the fusogen(s) promoting membrane fusion
4: To probe the GPCR signal for fusion initiation
5: To define the mechanism of fusion termination
By combining genetic, optogenetic, biochemical, live-imaging, synthetic and modeling approaches, this project will bring a molecular and conceptual understanding of cell fusion. This work will have far-ranging relevance for cell polarization, cytoskeletal organization, cell signalling and communication, and cell fate regulation.
Max ERC Funding
1 999 956 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym CENDUP
Project Decoding the mechanisms of centrosome duplication
Researcher (PI) Pierre Gönczy
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), LS3, ERC-2008-AdG
Summary Centrosome duplication entails the formation of a single procentriole next to each centriole once per cell cycle. The mechanisms governing procentriole formation are poorly understood and constitute a fundamental open question in cell biology. We will launch an innovative multidisciplinary research program to gain significant insight into these mechanisms using C. elegans and human cells. This research program is also expected to have a significant impact by contributing important novel assays to the field. Six specific aims will be pursued: 1) SAS-6 as a ZYG-1 substrate: mechanisms of procentriole formation in C. elegans. We will test in vivo the consequence of SAS-6 phosphorylation by ZYG-1. 2) Biochemical and structural analysis of SAS-6-containing macromolecular complexes (SAMACs). We will isolate and characterize SAMACs from C. elegans embryos and human cells, and analyze their structure using single-particle electron microscopy. 3) Novel cell-free assay for procentriole formation in human cells. We will develop such an assay and use it to test whether SAMACs can direct procentriole formation and whether candidate proteins are needed at centrioles or in the cytoplasm. 4) Mapping interactions between centriolar proteins in live human cells. We will use chemical methods developed by our collaborators to probe interactions between HsSAS-6 and centriolar proteins in a time- and space-resolved manner. 5) Functional genomic and chemical genetic screens in human cells. We will conduct high-throughput fluorescence-based screens in human cells to identify novel genes required for procentriole formation and small molecule inhibitors of this process. 6) Mechanisms underlying differential centriolar maintenance in the germline. In C. elegans, we will characterize how the sas-1 locus is required for centriole maintenance during spermatogenesis, as well as analyze centriole elimination during oogenesis and identify components needed for this process
Summary
Centrosome duplication entails the formation of a single procentriole next to each centriole once per cell cycle. The mechanisms governing procentriole formation are poorly understood and constitute a fundamental open question in cell biology. We will launch an innovative multidisciplinary research program to gain significant insight into these mechanisms using C. elegans and human cells. This research program is also expected to have a significant impact by contributing important novel assays to the field. Six specific aims will be pursued: 1) SAS-6 as a ZYG-1 substrate: mechanisms of procentriole formation in C. elegans. We will test in vivo the consequence of SAS-6 phosphorylation by ZYG-1. 2) Biochemical and structural analysis of SAS-6-containing macromolecular complexes (SAMACs). We will isolate and characterize SAMACs from C. elegans embryos and human cells, and analyze their structure using single-particle electron microscopy. 3) Novel cell-free assay for procentriole formation in human cells. We will develop such an assay and use it to test whether SAMACs can direct procentriole formation and whether candidate proteins are needed at centrioles or in the cytoplasm. 4) Mapping interactions between centriolar proteins in live human cells. We will use chemical methods developed by our collaborators to probe interactions between HsSAS-6 and centriolar proteins in a time- and space-resolved manner. 5) Functional genomic and chemical genetic screens in human cells. We will conduct high-throughput fluorescence-based screens in human cells to identify novel genes required for procentriole formation and small molecule inhibitors of this process. 6) Mechanisms underlying differential centriolar maintenance in the germline. In C. elegans, we will characterize how the sas-1 locus is required for centriole maintenance during spermatogenesis, as well as analyze centriole elimination during oogenesis and identify components needed for this process
Max ERC Funding
2 004 155 €
Duration
Start date: 2009-04-01, End date: 2014-03-31
Project acronym CERDEV
Project Transcriptional controls over cerebellar neuron differentiation and circuit assembly
Researcher (PI) Ludovic TELLEY
Host Institution (HI) UNIVERSITE DE LAUSANNE
Call Details Starting Grant (StG), LS5, ERC-2017-STG
Summary The cerebellum is a critical regulator of motor function, which acts to integrate ongoing body states, sensory inputs and desired outcomes to adjust motor output. This motor control is achieved by a relatively small number of neuron types receiving two main sources of inputs and forming a single output pathway, the axons of Purkinje cells. Although the cerebellum is one of the first structures of the brain to differentiate, it undergoes a prolonged differentiation period such that mature cellular and circuit configuration is achieved only late after birth. Despite the functional importance of this structure, the molecular mechanisms that control type-specific cerebellar neurons generation, differentiation, and circuit assembly are poorly understood and are the topic of the present study.
In my research program, I propose to investigate the transcriptional programs that control the generation of distinct subtypes of cerebellar neurons from progenitors, including Purkinje cells, granule cells and molecular layer interneurons (Work Package 1); the diversity of Purkinje cells across cerebellar regions (Work Package 2) and the postnatal differentiation and circuit integration of granule cells and molecular layer interneurons (Work Package 3). The general bases of the approach I propose consist in: i) specifically label cerebellar neuron progenitors and their progeny at sequential developmental time points pre- and post-natally using birthdate-based tagging, ii) FAC-sort these distinct cell types, iii) isolate these cells and identify their transcriptional signatures with single-cell resolution, iv) functionally interrogate top candidate genes and associated transcriptional programs using in vivo gain- and loss-of-function approaches. Together, these experiments aim at deciphering the cell-intrinsic processes controlling cerebellar circuit formation, towards a better understanding of the molecular mechanisms underlying cerebellar function and dysfunction.
Summary
The cerebellum is a critical regulator of motor function, which acts to integrate ongoing body states, sensory inputs and desired outcomes to adjust motor output. This motor control is achieved by a relatively small number of neuron types receiving two main sources of inputs and forming a single output pathway, the axons of Purkinje cells. Although the cerebellum is one of the first structures of the brain to differentiate, it undergoes a prolonged differentiation period such that mature cellular and circuit configuration is achieved only late after birth. Despite the functional importance of this structure, the molecular mechanisms that control type-specific cerebellar neurons generation, differentiation, and circuit assembly are poorly understood and are the topic of the present study.
In my research program, I propose to investigate the transcriptional programs that control the generation of distinct subtypes of cerebellar neurons from progenitors, including Purkinje cells, granule cells and molecular layer interneurons (Work Package 1); the diversity of Purkinje cells across cerebellar regions (Work Package 2) and the postnatal differentiation and circuit integration of granule cells and molecular layer interneurons (Work Package 3). The general bases of the approach I propose consist in: i) specifically label cerebellar neuron progenitors and their progeny at sequential developmental time points pre- and post-natally using birthdate-based tagging, ii) FAC-sort these distinct cell types, iii) isolate these cells and identify their transcriptional signatures with single-cell resolution, iv) functionally interrogate top candidate genes and associated transcriptional programs using in vivo gain- and loss-of-function approaches. Together, these experiments aim at deciphering the cell-intrinsic processes controlling cerebellar circuit formation, towards a better understanding of the molecular mechanisms underlying cerebellar function and dysfunction.
Max ERC Funding
1 499 885 €
Duration
Start date: 2018-02-01, End date: 2023-01-31
Project acronym CfC
Project Carrier for Cure: tailored combination drug delivery solutions for oncology
Researcher (PI) Donald Michael Hilvert
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Proof of Concept (PoC), ERC-2017-PoC
Summary Chemotherapy, often given in conjunction with other therapies is infamous for its off target associated side effects. Recent studies have shown that drugs combinations can act synergistically at certain ratios and are more effective and less toxic than single drug therapies. Despite promising in vitro results, combination drug therapy for Oncology has not been successfully translated to the clinic due to lack of efficient delivery systems that can maintain the desired synergistic drug concentrations in the body as each drug has a different pharmacokinetics and toxicity profile. The objective of this project is to develop a universal platform for simultaneous delivery of multiple drugs to specific cells in vivo using a protein cage that was developed in our laboratory for encapsulation of diverse cargoes.
Summary
Chemotherapy, often given in conjunction with other therapies is infamous for its off target associated side effects. Recent studies have shown that drugs combinations can act synergistically at certain ratios and are more effective and less toxic than single drug therapies. Despite promising in vitro results, combination drug therapy for Oncology has not been successfully translated to the clinic due to lack of efficient delivery systems that can maintain the desired synergistic drug concentrations in the body as each drug has a different pharmacokinetics and toxicity profile. The objective of this project is to develop a universal platform for simultaneous delivery of multiple drugs to specific cells in vivo using a protein cage that was developed in our laboratory for encapsulation of diverse cargoes.
Max ERC Funding
150 000 €
Duration
Start date: 2017-11-01, End date: 2019-04-30
Project acronym CFT-MAP
Project Charting the space of Conformal Field Theories: a combined nuMerical and Analytical aPproach
Researcher (PI) Alessandro VICHI
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Starting Grant (StG), PE2, ERC-2017-STG
Summary Conformal Field Theory (CFT) was originally conceived in four and three dimensions, with applications to particle physics and critical phenomena in mind. However, it is in two dimensions that the most spectacular results have been obtained. In higher dimensions, there used to be a general feeling that the constraining power of conformal symmetry by itself is insufficient to tell nontrivial things about the dynamics. Hence the interest in various additional assumptions. This is not fully satisfactory, since there are likely many CFTs that do not fulfill any of them.
The main focus of this proposal is to take a fresh look at the idea that the mathematical structure of CFTs is instead such a strong constraint that it can allow for a complete solution of the theory. This program, known as conformal bootstrap, has provided a new element in the quantum field theory toolbox to describe genuine non-perturbative cases.
This project aims to explore new directions and push forward the frontiers of conformal filed theories, with the ultimate objective of a detailed classification and understanding of scale invariant systems and their properties.
CFT-MAP will develop more efficient numerical techniques and complementary analytical tools making use of two main methods: by studying correlation functions of operators present in any quantum field theory, such as global symmetry conserved currents and the energy momentum tensor; by inspecting the analytical structure of correlation functions.
The project will scan the landscape of CFTs, identifying where and how they exist. By significantly improving over the methods at disposal, this proposal will be able to study theories currently are out of reach.
Besides the innovative methodologies, a fundamental outcome of CFT-MAP will be a word record determination of critical exponents in second phase transition, together with additional information that allows an approximate reconstruction of the QFT in the neighborhood of fixed points.
Summary
Conformal Field Theory (CFT) was originally conceived in four and three dimensions, with applications to particle physics and critical phenomena in mind. However, it is in two dimensions that the most spectacular results have been obtained. In higher dimensions, there used to be a general feeling that the constraining power of conformal symmetry by itself is insufficient to tell nontrivial things about the dynamics. Hence the interest in various additional assumptions. This is not fully satisfactory, since there are likely many CFTs that do not fulfill any of them.
The main focus of this proposal is to take a fresh look at the idea that the mathematical structure of CFTs is instead such a strong constraint that it can allow for a complete solution of the theory. This program, known as conformal bootstrap, has provided a new element in the quantum field theory toolbox to describe genuine non-perturbative cases.
This project aims to explore new directions and push forward the frontiers of conformal filed theories, with the ultimate objective of a detailed classification and understanding of scale invariant systems and their properties.
CFT-MAP will develop more efficient numerical techniques and complementary analytical tools making use of two main methods: by studying correlation functions of operators present in any quantum field theory, such as global symmetry conserved currents and the energy momentum tensor; by inspecting the analytical structure of correlation functions.
The project will scan the landscape of CFTs, identifying where and how they exist. By significantly improving over the methods at disposal, this proposal will be able to study theories currently are out of reach.
Besides the innovative methodologies, a fundamental outcome of CFT-MAP will be a word record determination of critical exponents in second phase transition, together with additional information that allows an approximate reconstruction of the QFT in the neighborhood of fixed points.
Max ERC Funding
1 500 000 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym CHANGE
Project New CHallenges for (adaptive) PDE solvers: the interplay of ANalysis and GEometry
Researcher (PI) Annalisa BUFFA
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE1, ERC-2015-AdG
Summary The simulation of Partial Differential Equations (PDEs) is an indispensable tool for innovation in science and technology.
Computer-based simulation of PDEs approximates unknowns defined on a geometrical entity such as the computational domain with all of its properties. Mainly due to historical reasons, geometric design and numerical methods for PDEs have been developed independently, resulting in tools that rely on different representations of the same objects.
CHANGE aims at developing innovative mathematical tools for numerically solving PDEs and for geometric modeling and processing, the final goal being the definition of a common framework where geometrical entities and simulation are coherently integrated and where adaptive methods can be used to guarantee optimal use of computer resources, from the geometric description to the simulation.
We will concentrate on two classes of methods for the discretisation of PDEs that are having growing impact:
isogeometric methods and variational methods on polyhedral partitions. They are both extensions of standard finite elements enjoying exciting features, but both lack of an ad-hoc geometric modelling counterpart.
We will extend numerical methods to ensure robustness on the most general geometric models, and we will develop geometric tools to construct, manipulate and refine such models. Based on our tools, we will design an innovative adaptive framework, that jointly exploits multilevel representation of geometric entities and PDE unknowns.
Moreover, efficient algorithms call for efficient implementation: the issue of the optimisation of our algorithms on modern computer architecture will be addressed.
Our research (and the team involved in the project) will combine competencies in computer science, numerical analysis, high performance computing, and computational mechanics. Leveraging our innovative tools, we will also tackle challenging numerical problems deriving from bio-mechanical applications.
Summary
The simulation of Partial Differential Equations (PDEs) is an indispensable tool for innovation in science and technology.
Computer-based simulation of PDEs approximates unknowns defined on a geometrical entity such as the computational domain with all of its properties. Mainly due to historical reasons, geometric design and numerical methods for PDEs have been developed independently, resulting in tools that rely on different representations of the same objects.
CHANGE aims at developing innovative mathematical tools for numerically solving PDEs and for geometric modeling and processing, the final goal being the definition of a common framework where geometrical entities and simulation are coherently integrated and where adaptive methods can be used to guarantee optimal use of computer resources, from the geometric description to the simulation.
We will concentrate on two classes of methods for the discretisation of PDEs that are having growing impact:
isogeometric methods and variational methods on polyhedral partitions. They are both extensions of standard finite elements enjoying exciting features, but both lack of an ad-hoc geometric modelling counterpart.
We will extend numerical methods to ensure robustness on the most general geometric models, and we will develop geometric tools to construct, manipulate and refine such models. Based on our tools, we will design an innovative adaptive framework, that jointly exploits multilevel representation of geometric entities and PDE unknowns.
Moreover, efficient algorithms call for efficient implementation: the issue of the optimisation of our algorithms on modern computer architecture will be addressed.
Our research (and the team involved in the project) will combine competencies in computer science, numerical analysis, high performance computing, and computational mechanics. Leveraging our innovative tools, we will also tackle challenging numerical problems deriving from bio-mechanical applications.
Max ERC Funding
2 199 219 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym CIRCUIT
Project Neural circuits for space representation in the mammalian cortex
Researcher (PI) Edvard Ingjald Moser
Host Institution (HI) NORGES TEKNISK-NATURVITENSKAPELIGE UNIVERSITET NTNU
Call Details Advanced Grant (AdG), LS5, ERC-2008-AdG
Summary Neuroscience is one of the fastest-developing areas of science, but it is fair to say that we are still far from understanding how the brain produces subjective experience. For example, simple questions about the origin of thought, imagination, social interaction, or feelings lack even rudimentary answers. We have learnt much about the workings of individual cells and synapses, but psychological phenomena cannot be understood only at this level. These phenomena all emerge from interactions between large numbers of diverse cells in intermingled neural circuits. A major obstacle has been the absence of concepts and tools for investigating neural computation at the circuit level. The aim of this proposal is to combine new transgenic methods for cell type-specific intervention with large-scale multisite single-cell recording to determine how a basic cognitive function self-localization is generated in a functionally well-described mammalian neural circuit. We shall use our recent discovery of entorhinal grid cells as an access ramp. Grid cells fire only when the animal moves through certain locations. For each cell, these locations define a periodic triangular array spanning the whole environment. Grid cells co-exist with other entorhinal cell types encoding head direction, geometric borders, or conjunctions of features. This network is thought to form an essential part of the brain s coordinate system for metric navigation but the detailed wiring, the mechanism of grid formation, and the function of each morphological and functional cell type all remain to be determined. We shall address these open questions by measuring how dynamic spatial representation is affected by transgene-induced activation or inactivation of the individual components of the circuit. The endeavour will pioneer the functional analysis of neural circuits and may, perhaps for the first time, provide us with mechanistic insight into a non-sensory cognitive function in the mammalian cortex.
Summary
Neuroscience is one of the fastest-developing areas of science, but it is fair to say that we are still far from understanding how the brain produces subjective experience. For example, simple questions about the origin of thought, imagination, social interaction, or feelings lack even rudimentary answers. We have learnt much about the workings of individual cells and synapses, but psychological phenomena cannot be understood only at this level. These phenomena all emerge from interactions between large numbers of diverse cells in intermingled neural circuits. A major obstacle has been the absence of concepts and tools for investigating neural computation at the circuit level. The aim of this proposal is to combine new transgenic methods for cell type-specific intervention with large-scale multisite single-cell recording to determine how a basic cognitive function self-localization is generated in a functionally well-described mammalian neural circuit. We shall use our recent discovery of entorhinal grid cells as an access ramp. Grid cells fire only when the animal moves through certain locations. For each cell, these locations define a periodic triangular array spanning the whole environment. Grid cells co-exist with other entorhinal cell types encoding head direction, geometric borders, or conjunctions of features. This network is thought to form an essential part of the brain s coordinate system for metric navigation but the detailed wiring, the mechanism of grid formation, and the function of each morphological and functional cell type all remain to be determined. We shall address these open questions by measuring how dynamic spatial representation is affected by transgene-induced activation or inactivation of the individual components of the circuit. The endeavour will pioneer the functional analysis of neural circuits and may, perhaps for the first time, provide us with mechanistic insight into a non-sensory cognitive function in the mammalian cortex.
Max ERC Funding
2 499 112 €
Duration
Start date: 2009-01-01, End date: 2013-12-31
Project acronym CIVICS
Project Criminality, Victimization and Social Interactions
Researcher (PI) Katrine Vellesen LOKEN
Host Institution (HI) NORGES HANDELSHOYSKOLE
Call Details Starting Grant (StG), SH1, ERC-2017-STG
Summary A large social science literature tries to describe and understand the causes and consequences of crime, usually focusing on individuals’ criminal activity in isolation. The ambitious aim of this research project is to establish a broader perspective of crime that takes into account the social context in which it takes place. The findings will inform policymakers on how to better use funds both for crime prevention and the rehabilitation of incarcerated criminals.
Criminal activity is often a group phenomenon, yet little is known about how criminal networks form and what can be done to break them up or prevent them from forming in the first place. Overlooking victims of crime and their relationships to criminals has led to an incomplete and distorted view of crime and its individual and social costs. While a better understanding of these social interactions is crucial for designing more effective anti-crime policy, existing research in criminology, sociology and economics has struggled to identify causal effects due to data limitations and difficult statistical identification issues.
This project will push the research frontier by combining register datasets that have never been merged before, and by using several state-of-the-art statistical methods to estimate causal effects related to criminal peer groups and their victims. More specifically, we aim to do the following:
-Use recent advances in network modelling to describe the structure and density of various criminal networks and study network dynamics following the arrest/incarceration or death of a central player in a network.
-Obtain a more accurate measure of the societal costs of crime, including actual measures for lost earnings and physical and mental health problems, following victims and their offenders both before and after a crime takes place.
-Conduct a randomized controlled trial within a prison system to better understand how current rehabilitation programs affect criminal and victim networks.
Summary
A large social science literature tries to describe and understand the causes and consequences of crime, usually focusing on individuals’ criminal activity in isolation. The ambitious aim of this research project is to establish a broader perspective of crime that takes into account the social context in which it takes place. The findings will inform policymakers on how to better use funds both for crime prevention and the rehabilitation of incarcerated criminals.
Criminal activity is often a group phenomenon, yet little is known about how criminal networks form and what can be done to break them up or prevent them from forming in the first place. Overlooking victims of crime and their relationships to criminals has led to an incomplete and distorted view of crime and its individual and social costs. While a better understanding of these social interactions is crucial for designing more effective anti-crime policy, existing research in criminology, sociology and economics has struggled to identify causal effects due to data limitations and difficult statistical identification issues.
This project will push the research frontier by combining register datasets that have never been merged before, and by using several state-of-the-art statistical methods to estimate causal effects related to criminal peer groups and their victims. More specifically, we aim to do the following:
-Use recent advances in network modelling to describe the structure and density of various criminal networks and study network dynamics following the arrest/incarceration or death of a central player in a network.
-Obtain a more accurate measure of the societal costs of crime, including actual measures for lost earnings and physical and mental health problems, following victims and their offenders both before and after a crime takes place.
-Conduct a randomized controlled trial within a prison system to better understand how current rehabilitation programs affect criminal and victim networks.
Max ERC Funding
1 187 046 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym CLLCLONE
Project Harnessing clonal evolution in chronic lymphocytic leukemia
Researcher (PI) Davide ROSSI
Host Institution (HI) FONDAZIONE PER L'ISTITUTO ONCOLOGICO DI RICERCA (IOR)
Call Details Consolidator Grant (CoG), LS7, ERC-2017-COG
Summary Chronic lymphocytic leukemia (CLL), the most common leukemia in adults, is addicted of interactions with the microenvironment. The B-cell receptor (BCR) is one of the most important surface molecules that CLL cells use to gain oncogenic signals from the microenvironment. The critical role of BCR signaling for the pathogenesis of CLL is supported by the therapeutic success of ibrutinib, a targeted agent that disrupts the BCR pathway. Beside microenvironment-promoted oncogenic signals, the biology of CLL is also driven by molecular lesions and clonal evolution, that mark CLL progression and treatment resistance. The interconnection between microenvironment-promoted oncogenic signals and clonal evolution has been postulated in CLL but never proven because of the lack of suitable ex vivo models. Ibrutinib allows the unprecedented opportunity of assessing the contribution of cell signaling to cancer clonal evolution directly in vivo in patients. The project working hypothesis is that mutation- and selection-driven clonal evolution is promoted by microenvironment-induced signals, including those propagated from the BCR. According to this hypothesis: i) BCR signaling inhibition due to ibrutinib should stop clonal evolution; while ii) acquisition of by-pass mechanisms that keep ongoing signaling should promote mutation and selection despite BCR inhibition, thus favoring CLL clonal evolution and ibrutinib resistance. In this scenario, the combination of ibrutinib with drugs that overcome by-pass mechanisms could prevent clonal evolution, thus improving treatment efficacy and patient outcome. In order to address our working hypothesis, we will take advantage of clinical trial and co-clinical trial samples to monitor signaling and clonal evolution under ibrutinib and ibrutinib-based combination treatments.
Summary
Chronic lymphocytic leukemia (CLL), the most common leukemia in adults, is addicted of interactions with the microenvironment. The B-cell receptor (BCR) is one of the most important surface molecules that CLL cells use to gain oncogenic signals from the microenvironment. The critical role of BCR signaling for the pathogenesis of CLL is supported by the therapeutic success of ibrutinib, a targeted agent that disrupts the BCR pathway. Beside microenvironment-promoted oncogenic signals, the biology of CLL is also driven by molecular lesions and clonal evolution, that mark CLL progression and treatment resistance. The interconnection between microenvironment-promoted oncogenic signals and clonal evolution has been postulated in CLL but never proven because of the lack of suitable ex vivo models. Ibrutinib allows the unprecedented opportunity of assessing the contribution of cell signaling to cancer clonal evolution directly in vivo in patients. The project working hypothesis is that mutation- and selection-driven clonal evolution is promoted by microenvironment-induced signals, including those propagated from the BCR. According to this hypothesis: i) BCR signaling inhibition due to ibrutinib should stop clonal evolution; while ii) acquisition of by-pass mechanisms that keep ongoing signaling should promote mutation and selection despite BCR inhibition, thus favoring CLL clonal evolution and ibrutinib resistance. In this scenario, the combination of ibrutinib with drugs that overcome by-pass mechanisms could prevent clonal evolution, thus improving treatment efficacy and patient outcome. In order to address our working hypothesis, we will take advantage of clinical trial and co-clinical trial samples to monitor signaling and clonal evolution under ibrutinib and ibrutinib-based combination treatments.
Max ERC Funding
1 940 000 €
Duration
Start date: 2018-07-01, End date: 2023-06-30
Project acronym CLUSTER
Project Birth of solids: atomic-scale processes in crystal nucleation
Researcher (PI) Rolf Erni
Host Institution (HI) EIDGENOSSISCHE MATERIALPRUFUNGS- UND FORSCHUNGSANSTALT
Call Details Consolidator Grant (CoG), PE4, ERC-2015-CoG
Summary The goal of this project is to explore the fundamental processes which trigger the nucleation and growth of solids. Condensed matter is formed by clustering of atoms, ions or molecules. This initial step is key for the onset of crystallization, condensation and precipitate formation. Yet, despite of the scientific and technological significance of these phenomena, on an atomistic level we merely have expectations on how atoms should behave rather than experimental evidence about how the growth of solid matter is initiated. The classical nucleation theory is commonly in agreement with experiments, provided the original and the final stages are inspected qualitatively. However, the classical theory does not define what fundamentally constitutes a pre-nucleation state or how a nucleus is formed at all. CLUSTER aims at investigating the very early stages of crystalline matter formation on an unprecedented length scale. It shall explore the atomic mechanisms which prompt the formation of solids. Complemented by density functional theory calculations and molecular dynamics simulations, in-situ high-resolution electron microscopy shall be used to investigate the formation, dynamics, stability and evolution of tiniest atomic clusters which represent the embryos of solid matter. Firstly, we investigate the 3D structure of clusters deposited on suspended graphene. Secondly, we focus on cluster formation, the evolution of sub-critical nuclei and the onset of particle growth by thermal activation. Thirdly, using a novel liquid-cell approach in the transmission electron microscope, we control and monitor in-situ cluster formation and precipitation in supersaturated solutions. The results of CLUSTER, which will advance the understanding of the birth of solid matter, are important for the controlled synthesis of (nano-)materials, for cluster science and catalysis and for the development of novel materials.
Summary
The goal of this project is to explore the fundamental processes which trigger the nucleation and growth of solids. Condensed matter is formed by clustering of atoms, ions or molecules. This initial step is key for the onset of crystallization, condensation and precipitate formation. Yet, despite of the scientific and technological significance of these phenomena, on an atomistic level we merely have expectations on how atoms should behave rather than experimental evidence about how the growth of solid matter is initiated. The classical nucleation theory is commonly in agreement with experiments, provided the original and the final stages are inspected qualitatively. However, the classical theory does not define what fundamentally constitutes a pre-nucleation state or how a nucleus is formed at all. CLUSTER aims at investigating the very early stages of crystalline matter formation on an unprecedented length scale. It shall explore the atomic mechanisms which prompt the formation of solids. Complemented by density functional theory calculations and molecular dynamics simulations, in-situ high-resolution electron microscopy shall be used to investigate the formation, dynamics, stability and evolution of tiniest atomic clusters which represent the embryos of solid matter. Firstly, we investigate the 3D structure of clusters deposited on suspended graphene. Secondly, we focus on cluster formation, the evolution of sub-critical nuclei and the onset of particle growth by thermal activation. Thirdly, using a novel liquid-cell approach in the transmission electron microscope, we control and monitor in-situ cluster formation and precipitation in supersaturated solutions. The results of CLUSTER, which will advance the understanding of the birth of solid matter, are important for the controlled synthesis of (nano-)materials, for cluster science and catalysis and for the development of novel materials.
Max ERC Funding
2 271 250 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym CODE
Project Coincidence detection of proteins and lipids in regulation of cellular membrane dynamics
Researcher (PI) Harald STENMARK
Host Institution (HI) UNIVERSITETET I OSLO
Call Details Advanced Grant (AdG), LS3, ERC-2017-ADG
Summary Specific recruitment of different proteins to distinct intracellular membranes is fundamental in the biology of eukaryotic cells, but the molecular basis for specificity is incompletely understood. This proposal investigates the hypothesis that coincidence detection of proteins and lipids constitutes a major mechanism for specific recruitment of proteins to intracellular membranes in order to control cellular membrane dynamics. CODE will establish and validate mathematical models for coincidence detection, identify and functionally characterise novel coincidence detectors, and engineer artificial coincidence detectors as novel tools in cell biology and biotechnology.
Summary
Specific recruitment of different proteins to distinct intracellular membranes is fundamental in the biology of eukaryotic cells, but the molecular basis for specificity is incompletely understood. This proposal investigates the hypothesis that coincidence detection of proteins and lipids constitutes a major mechanism for specific recruitment of proteins to intracellular membranes in order to control cellular membrane dynamics. CODE will establish and validate mathematical models for coincidence detection, identify and functionally characterise novel coincidence detectors, and engineer artificial coincidence detectors as novel tools in cell biology and biotechnology.
Max ERC Funding
2 500 000 €
Duration
Start date: 2019-01-01, End date: 2023-12-31
Project acronym COGRA
Project Decoding the Mechanics of Metals by Coarse-Grained Atomistics
Researcher (PI) Dennis Michael KOCHMANN
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Consolidator Grant (CoG), PE8, ERC-2017-COG
Summary """First principles"" and ""bottom-up"" have become buzz words across scientific and engineering disciplines when it comes to the discovery, prediction and understanding of material properties and their link to processing and microstructure. Reality, however, teaches us that in the foreseeable future computational resources will be insufficient to apply predictive techniques such as quantum mechanics or atomistics to the technologically most relevant length and time scales - far above nanometers and nanoseconds. This proposal aims for nothing less but the seemingly impossible: the application of atomistic techniques to problems occurring over microns to millimeters and seconds to minutes. Instead of relying on computational power, this will be achieved by a combination of scale-bridging methodologies (involving the PI's nonlocal and meshless quasicontinuum techniques, concepts from particle methods, continuum and statistical mechanics) and computational science strategies in order to produce new theory and an open-source, computational toolset for long-term, large-scale simulations relying solely on atomistic input. Spatial upscaling, temporal upscaling as well as heat and mass transfer will be addressed. Enabled by the new scale-bridging capabilities, two representative, open challenges will be investigated: recrystallization in magnesium during thermo-mechanical processing and corrosion in steel by hydrogen embrittlement. Both are of enormous technological and economic importance but current techniques are insufficient to bridge the gap between the macroscopic mechanical performance, microstructural mechanisms and predictive atomic-scale simulations. The outcomes of this five-year research program will provide never-before techniques and numerical tools to catalyze a user community across science and technology. Although the focus is on metals, several of the proposed techniques are applicable to a significantly wider range of materials and applications."
Summary
"""First principles"" and ""bottom-up"" have become buzz words across scientific and engineering disciplines when it comes to the discovery, prediction and understanding of material properties and their link to processing and microstructure. Reality, however, teaches us that in the foreseeable future computational resources will be insufficient to apply predictive techniques such as quantum mechanics or atomistics to the technologically most relevant length and time scales - far above nanometers and nanoseconds. This proposal aims for nothing less but the seemingly impossible: the application of atomistic techniques to problems occurring over microns to millimeters and seconds to minutes. Instead of relying on computational power, this will be achieved by a combination of scale-bridging methodologies (involving the PI's nonlocal and meshless quasicontinuum techniques, concepts from particle methods, continuum and statistical mechanics) and computational science strategies in order to produce new theory and an open-source, computational toolset for long-term, large-scale simulations relying solely on atomistic input. Spatial upscaling, temporal upscaling as well as heat and mass transfer will be addressed. Enabled by the new scale-bridging capabilities, two representative, open challenges will be investigated: recrystallization in magnesium during thermo-mechanical processing and corrosion in steel by hydrogen embrittlement. Both are of enormous technological and economic importance but current techniques are insufficient to bridge the gap between the macroscopic mechanical performance, microstructural mechanisms and predictive atomic-scale simulations. The outcomes of this five-year research program will provide never-before techniques and numerical tools to catalyze a user community across science and technology. Although the focus is on metals, several of the proposed techniques are applicable to a significantly wider range of materials and applications."
Max ERC Funding
1 995 128 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym COLLMOT
Project Complex structure and dynamics of collective motion
Researcher (PI) Tamás Vicsek
Host Institution (HI) EOTVOS LORAND TUDOMANYEGYETEM
Call Details Advanced Grant (AdG), PE3, ERC-2008-AdG
Summary Collective behaviour is a widespread phenomenon in nature and technology making it a very important subject to study in various contexts. The main goal we intend to achieve in our multidisciplinary research is the identification and documentation of new unifying principles describing the essential aspects of collective motion, being one of the most relevant and spectacular manifestations of collective behaviour. We shall carry out novel type of experiments, design models that are both simple and realistic enough to reproduce the observations and develop concepts for a better interpretation of the complexity of systems consisting of many organisms and such non-living objects as interacting robots. We plan to study systems ranging from cultures of migrating tissue cells through flocks of birds to collectively moving devices. The interrelation of these systems will be considered in order to deepen the understanding of the main patterns of group motion in both living and non-living systems by learning about the similar phenomena in the two domains of nature. Thus, we plan to understand the essential ingredients of flocking of birds by building collectively moving unmanned aerial vehicles while, in turn, high resolution spatiotemporal GPS data of pigeon flocks will be used to make helpful conclusions for the best designs for swarms of robots. In particular, we shall construct and build a set of vehicles that will be capable, for the first time, to exhibit flocking behaviour in the three-dimensional space. The methods we shall adopt will range from approaches used in statistical physics and network theory to various new techniques in cell biology and collective robotics. All this will be based on numerous prior results (both ours and others) published in leading interdisciplinary journals. The planned research will have the potential of leading to ground breaking results with significant implications in various fields of science and technology.
Summary
Collective behaviour is a widespread phenomenon in nature and technology making it a very important subject to study in various contexts. The main goal we intend to achieve in our multidisciplinary research is the identification and documentation of new unifying principles describing the essential aspects of collective motion, being one of the most relevant and spectacular manifestations of collective behaviour. We shall carry out novel type of experiments, design models that are both simple and realistic enough to reproduce the observations and develop concepts for a better interpretation of the complexity of systems consisting of many organisms and such non-living objects as interacting robots. We plan to study systems ranging from cultures of migrating tissue cells through flocks of birds to collectively moving devices. The interrelation of these systems will be considered in order to deepen the understanding of the main patterns of group motion in both living and non-living systems by learning about the similar phenomena in the two domains of nature. Thus, we plan to understand the essential ingredients of flocking of birds by building collectively moving unmanned aerial vehicles while, in turn, high resolution spatiotemporal GPS data of pigeon flocks will be used to make helpful conclusions for the best designs for swarms of robots. In particular, we shall construct and build a set of vehicles that will be capable, for the first time, to exhibit flocking behaviour in the three-dimensional space. The methods we shall adopt will range from approaches used in statistical physics and network theory to various new techniques in cell biology and collective robotics. All this will be based on numerous prior results (both ours and others) published in leading interdisciplinary journals. The planned research will have the potential of leading to ground breaking results with significant implications in various fields of science and technology.
Max ERC Funding
1 248 000 €
Duration
Start date: 2009-03-01, End date: 2015-02-28
Project acronym COMANFLO
Project Computation and analysis of statistical solutions of fluid flow
Researcher (PI) Siddhartha MISHRA
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Consolidator Grant (CoG), PE1, ERC-2017-COG
Summary Entropy (admissible) weak solutions are widely considered to be the standard solution framework for hyperbolic systems of conservation laws and incompressible Euler equations. However, the lack of global existence results in several space dimensions, the recent demonstration of non-uniqueness of these solutions and computations showing the lack of convergence of state of the art numerical methods to them, have reinforced the need to seek alternative solution paradigms.
Although one can show that numerical approximations of these nonlinear PDEs converge to measure-valued solutions i.e Young measures, these solutions are not unique and we need to constrain them further. Statistical solutions i.e, time-parametrized probability measures on spaces of integrable functions, are a promising framework in this regard as they can be characterized as a measure-valued solution that also contains information about all possible multi-point spatial correlations. So far, well-posedness of statistical solutions has been shown only in the case of scalar conservation laws.
The main aim of the proposed project is to analyze statistical solutions of systems of conservation laws and incompressible Euler equations and to design efficient numerical approximations for them. We aim to prove global existence of statistical solutions in several space dimensions, by showing convergence of these numerical approximations, and to identify suitable additional admissibility criteria for statistical solutions that can ensure uniqueness. We will use these numerical methods to compute statistical quantities of interest and relate them to existing theories (and observations) for unstable and turbulent fluid flows. Successful completion of this project aims to establish statistical solutions as the appropriate solution paradigm for inviscid fluid flows, even for deterministic initial data, and will pave the way for applications to astrophysics, climate science and uncertainty quantification.
Summary
Entropy (admissible) weak solutions are widely considered to be the standard solution framework for hyperbolic systems of conservation laws and incompressible Euler equations. However, the lack of global existence results in several space dimensions, the recent demonstration of non-uniqueness of these solutions and computations showing the lack of convergence of state of the art numerical methods to them, have reinforced the need to seek alternative solution paradigms.
Although one can show that numerical approximations of these nonlinear PDEs converge to measure-valued solutions i.e Young measures, these solutions are not unique and we need to constrain them further. Statistical solutions i.e, time-parametrized probability measures on spaces of integrable functions, are a promising framework in this regard as they can be characterized as a measure-valued solution that also contains information about all possible multi-point spatial correlations. So far, well-posedness of statistical solutions has been shown only in the case of scalar conservation laws.
The main aim of the proposed project is to analyze statistical solutions of systems of conservation laws and incompressible Euler equations and to design efficient numerical approximations for them. We aim to prove global existence of statistical solutions in several space dimensions, by showing convergence of these numerical approximations, and to identify suitable additional admissibility criteria for statistical solutions that can ensure uniqueness. We will use these numerical methods to compute statistical quantities of interest and relate them to existing theories (and observations) for unstable and turbulent fluid flows. Successful completion of this project aims to establish statistical solutions as the appropriate solution paradigm for inviscid fluid flows, even for deterministic initial data, and will pave the way for applications to astrophysics, climate science and uncertainty quantification.
Max ERC Funding
1 959 323 €
Duration
Start date: 2018-08-01, End date: 2023-07-31
Project acronym CONENE
Project Control of Large-scale Stochastic Hybrid Systems for Stability of Power Grid with Renewable Energy
Researcher (PI) Maryam Kamgarpour
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), PE7, ERC-2015-STG
Summary The increasing uptake of renewable energy sources and liberalization of electricity markets are significantly changing power system operations. To ensure stability of the grid, it is critical to develop provably safe feedback control algorithms that take into account uncertainties in the output of weather-based renewable generation and in participation of distributed producers and consumers in electricity markets. The focus of this proposal is to develop the theory and algorithms for control of large-scale stochastic hybrid systems in order to guarantee safe and efficient grid operations. Stochastic hybrid systems are a powerful modeling framework. They capture uncertainties in the output of weather-based renewable generation as well as complex hybrid state interactions arising from discrete-valued network topologies with continuous-valued voltages and frequencies. The problems of stability and efficiency of the grid in the face of its changes will be formulated as safety and optimal control problems for stochastic hybrid systems. Using recent advances in numerical optimization and statistics, provably safe and scalable numerical algorithms for control of this class of systems will be developed. These algorithms will be implemented and validated on realistic power grid simulation platforms and will take advantage of recent advances in sensing, control and communication technologies for the grid. The end outcome of the project is better quantifying and controlling effects of increased uncertainties on the stability of the grid. The societal and economic implications of this study are tied with the value and price of a secure power grid. Addressing the questions formulated in this proposal will bring the EU closer to its ambitious renewable energy goals.
Summary
The increasing uptake of renewable energy sources and liberalization of electricity markets are significantly changing power system operations. To ensure stability of the grid, it is critical to develop provably safe feedback control algorithms that take into account uncertainties in the output of weather-based renewable generation and in participation of distributed producers and consumers in electricity markets. The focus of this proposal is to develop the theory and algorithms for control of large-scale stochastic hybrid systems in order to guarantee safe and efficient grid operations. Stochastic hybrid systems are a powerful modeling framework. They capture uncertainties in the output of weather-based renewable generation as well as complex hybrid state interactions arising from discrete-valued network topologies with continuous-valued voltages and frequencies. The problems of stability and efficiency of the grid in the face of its changes will be formulated as safety and optimal control problems for stochastic hybrid systems. Using recent advances in numerical optimization and statistics, provably safe and scalable numerical algorithms for control of this class of systems will be developed. These algorithms will be implemented and validated on realistic power grid simulation platforms and will take advantage of recent advances in sensing, control and communication technologies for the grid. The end outcome of the project is better quantifying and controlling effects of increased uncertainties on the stability of the grid. The societal and economic implications of this study are tied with the value and price of a secure power grid. Addressing the questions formulated in this proposal will bring the EU closer to its ambitious renewable energy goals.
Max ERC Funding
1 346 438 €
Duration
Start date: 2016-04-01, End date: 2020-09-30
Project acronym CONFRA
Project Conformal fractals in analysis, dynamics, physics
Researcher (PI) Stanislav Smirnov
Host Institution (HI) UNIVERSITE DE GENEVE
Call Details Advanced Grant (AdG), PE1, ERC-2008-AdG
Summary The goal of this project is to study conformally invariant fractal structures from the perspectives of analysis, dynamics, probability, geometry and physics, emphasizing interrelations of these fields. In the last two decades such structures emerged in several areas: continuum scaling limits of 2D critical models in statistical physics (percolation, Ising model); extremal configurations for various problems in complex analysis (multifractal harmonic measures, coefficient growth of univalent maps, Brennan's conjecture); chaotic sets for complex dynamical systems (Julia sets, Kleinian groups). Capitalizing on recent successes, I plan to continue my work in these areas, exploiting their interactions and connections to physics. I intend to achieve at least some of the following goals: * To establish that several critical lattice models have conformally invariant scaling limits, by building upon results on percolation and Ising models and finding discrete holomorphic observables. * To study geometric properties of arising fractal curves and random fields by connecting them to Schramm's SLE curves and Gaussian Free Fields. * To investigate massive scaling limits by describing them geometrically with generalizations of SLEs. * To lay mathematical framework behind relevant physical notions, such as Coulomb Gas (by relating height functions to GFFs) and Quantum Gravity (by identifying limits of random planar graphs with Liouville QGs). * To improve known bounds in several old questions in complex analysis by studying multifractal spectra of harmonic measures. * To estimate extremal behavior of such spectra by using holomorphic motions of (quasi) conformal maps and thermodynamic formalism. * To understand nature of extremal multifractals for harmonic measure by studying random and dynamical fractals. The topics involved range from century old to very young ones. Recently connections between them started to emerge, opening exciting possibilities for new developments in some long standing open problems.
Summary
The goal of this project is to study conformally invariant fractal structures from the perspectives of analysis, dynamics, probability, geometry and physics, emphasizing interrelations of these fields. In the last two decades such structures emerged in several areas: continuum scaling limits of 2D critical models in statistical physics (percolation, Ising model); extremal configurations for various problems in complex analysis (multifractal harmonic measures, coefficient growth of univalent maps, Brennan's conjecture); chaotic sets for complex dynamical systems (Julia sets, Kleinian groups). Capitalizing on recent successes, I plan to continue my work in these areas, exploiting their interactions and connections to physics. I intend to achieve at least some of the following goals: * To establish that several critical lattice models have conformally invariant scaling limits, by building upon results on percolation and Ising models and finding discrete holomorphic observables. * To study geometric properties of arising fractal curves and random fields by connecting them to Schramm's SLE curves and Gaussian Free Fields. * To investigate massive scaling limits by describing them geometrically with generalizations of SLEs. * To lay mathematical framework behind relevant physical notions, such as Coulomb Gas (by relating height functions to GFFs) and Quantum Gravity (by identifying limits of random planar graphs with Liouville QGs). * To improve known bounds in several old questions in complex analysis by studying multifractal spectra of harmonic measures. * To estimate extremal behavior of such spectra by using holomorphic motions of (quasi) conformal maps and thermodynamic formalism. * To understand nature of extremal multifractals for harmonic measure by studying random and dynamical fractals. The topics involved range from century old to very young ones. Recently connections between them started to emerge, opening exciting possibilities for new developments in some long standing open problems.
Max ERC Funding
1 278 000 €
Duration
Start date: 2009-01-01, End date: 2013-12-31
Project acronym CONSERVATION
Project The Economics and Politics of Conservation
Researcher (PI) Bård Gjul Harstad
Host Institution (HI) UNIVERSITETET I OSLO
Call Details Consolidator Grant (CoG), SH1, ERC-2015-CoG
Summary The UN’s approach to climate policy is to focus on national emission caps for greenhouse gases. Most of the economic theory on environmental agreements is also studying such a demand-side approach, even though it is well known that such an approach has several flaws, including carbon leakage and the incentive to free ride. Recent theory has suggested that a better approach may be to focus on the supply-side of the equation, rather than the demand-side. While this recent theory is promising, it is only indicative and has several shortcomings that must be analysed. The goal of this project is to investigate in depth how to best use conservation as an environmental policy tool. The project aims at integrating the theory of emissions and pollution with a model of extraction and thus the supply of exhaustible resources in a coherent and dynamic game-theoretic framework. I will apply this framework to analyse negotiations, agreements, and contracts on extraction levels, and how such policies can interact, complement or substitute for agreements focusing on consumption/emissions. It will also be important to develop and apply the tools of political economics to investigate which (second-best) agreement one may expect to be feasible as equilibria of the game. For highly asymmetric settings, where the possessors of the resource are few (such as for tropical forests), side transfers are necessary and contract theory will be the natural analytical tool when
searching for the best agreement. However, also standard contract theory needs to be developed further once one recognizes that the “agent” in the principal-agent relationship is an organization or a government, rather than an individual.
Summary
The UN’s approach to climate policy is to focus on national emission caps for greenhouse gases. Most of the economic theory on environmental agreements is also studying such a demand-side approach, even though it is well known that such an approach has several flaws, including carbon leakage and the incentive to free ride. Recent theory has suggested that a better approach may be to focus on the supply-side of the equation, rather than the demand-side. While this recent theory is promising, it is only indicative and has several shortcomings that must be analysed. The goal of this project is to investigate in depth how to best use conservation as an environmental policy tool. The project aims at integrating the theory of emissions and pollution with a model of extraction and thus the supply of exhaustible resources in a coherent and dynamic game-theoretic framework. I will apply this framework to analyse negotiations, agreements, and contracts on extraction levels, and how such policies can interact, complement or substitute for agreements focusing on consumption/emissions. It will also be important to develop and apply the tools of political economics to investigate which (second-best) agreement one may expect to be feasible as equilibria of the game. For highly asymmetric settings, where the possessors of the resource are few (such as for tropical forests), side transfers are necessary and contract theory will be the natural analytical tool when
searching for the best agreement. However, also standard contract theory needs to be developed further once one recognizes that the “agent” in the principal-agent relationship is an organization or a government, rather than an individual.
Max ERC Funding
1 571 554 €
Duration
Start date: 2016-08-01, End date: 2021-07-31
Project acronym CORNET
Project Provably Correct Networks
Researcher (PI) Costin RAICIU
Host Institution (HI) UNIVERSITATEA POLITEHNICA DIN BUCURESTI
Call Details Starting Grant (StG), PE6, ERC-2017-STG
Summary Networks are the backbone of our society, but configuring them is error-prone and tedious: misconfigured networks result in headline grabbing network outages that affect many users and hurt company revenues while security breaches that endanger millions of customers. There are currently no guarantees that deployed networks correctly implement their operator’s policy.
Existing research has focused on two directions: a) low level analysis and instrumentation of real networking code prevents memory bugs in individual network elements, but does not capture network-wide properties desired by operators such as reachability or loop freedom; b) high-level analysis of network-wide properties to verify operator policies on abstract network models; unfortunately, there are no guarantees that the models are an accurate representation of the real network code, and often low-level errors invalidate the conclusions of the high-level analysis.
We propose to achieve provably correct networks by simultaneously targeting both low-level security concerns and network-wide policy compliance checking. Our key proposal is to rely on exhaustive network symbolic execution for verification and to automatically generate provably correct implementations from network models. Generating efficient code that is equivalent to the model poses great challenges that we will address with three key contributions:
a) We will develop a novel theoretical equivalence framework based on symbolic execution semantics, as well as equivalence-preserving model transformations to automatically optimize network models for runtime efficiency.
b) We will develop compilers that take network models and generate functionally equivalent and efficient executable code for different targets (e.g. P4 and C).
c) We will design algorithms that generate and insert runtime guards that ensure correctness of the network with respect to the desired policy even when legacy boxes are deployed in the network.
Summary
Networks are the backbone of our society, but configuring them is error-prone and tedious: misconfigured networks result in headline grabbing network outages that affect many users and hurt company revenues while security breaches that endanger millions of customers. There are currently no guarantees that deployed networks correctly implement their operator’s policy.
Existing research has focused on two directions: a) low level analysis and instrumentation of real networking code prevents memory bugs in individual network elements, but does not capture network-wide properties desired by operators such as reachability or loop freedom; b) high-level analysis of network-wide properties to verify operator policies on abstract network models; unfortunately, there are no guarantees that the models are an accurate representation of the real network code, and often low-level errors invalidate the conclusions of the high-level analysis.
We propose to achieve provably correct networks by simultaneously targeting both low-level security concerns and network-wide policy compliance checking. Our key proposal is to rely on exhaustive network symbolic execution for verification and to automatically generate provably correct implementations from network models. Generating efficient code that is equivalent to the model poses great challenges that we will address with three key contributions:
a) We will develop a novel theoretical equivalence framework based on symbolic execution semantics, as well as equivalence-preserving model transformations to automatically optimize network models for runtime efficiency.
b) We will develop compilers that take network models and generate functionally equivalent and efficient executable code for different targets (e.g. P4 and C).
c) We will design algorithms that generate and insert runtime guards that ensure correctness of the network with respect to the desired policy even when legacy boxes are deployed in the network.
Max ERC Funding
1 325 000 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym CorPain
Project Dissection of a cortical microcircuit for the processing of pain affect
Researcher (PI) Thomas Nevian
Host Institution (HI) UNIVERSITAET BERN
Call Details Consolidator Grant (CoG), LS5, ERC-2015-CoG
Summary It is a fundamental but still elusive question how nociceptive processing is performed in neuronal networks in the cortex for the conscious experience of pain.
The objective of this project is to identify and characterize the cortical microcircuits in the anterior cingulate cortex (ACC) that are involved in pain processing with cellular resolution. The ACC is essential for evaluating the emotional/affective component of pain. Our research will investigate the elusive question if a dedicated pain circuit exists in the ACC. We will dissect the detailed structure and connectivity of this pain circuit and investigate how it generates affective behavioural responses related to pain.
At the core of this project, we will characterize the neuronal networks in the ACC that are engaged in the processing of noxious stimuli. It will be highly interesting to determine the neuronal dynamics in the ACC during nociception and in chronic pain conditions on the cellular and network level. Furthermore, we will elucidate the downstream targets that are influenced by the pain circuits in the ACC to generate the appropriate behavioural responses.
These aims will be achieved by a combination of electrophysiology, 2-photon Ca2+ imaging and pharmaco- and opto-genetic approaches both in vivo and in vitro and behavioural testing of pain affect in mice.
This project will give a comprehensive picture of how a cortical microcircuit processes afferent noxious stimuli to generate an affective behavioural response. This study will give important insight into the fundamental question of cortical information processing and it is highly relevant to understand pain processing and the changes in the network dynamics that manifest the transition to chronic pain. Eventually this might contribute to the development of novel treatment strategies for this pathological condition.
Summary
It is a fundamental but still elusive question how nociceptive processing is performed in neuronal networks in the cortex for the conscious experience of pain.
The objective of this project is to identify and characterize the cortical microcircuits in the anterior cingulate cortex (ACC) that are involved in pain processing with cellular resolution. The ACC is essential for evaluating the emotional/affective component of pain. Our research will investigate the elusive question if a dedicated pain circuit exists in the ACC. We will dissect the detailed structure and connectivity of this pain circuit and investigate how it generates affective behavioural responses related to pain.
At the core of this project, we will characterize the neuronal networks in the ACC that are engaged in the processing of noxious stimuli. It will be highly interesting to determine the neuronal dynamics in the ACC during nociception and in chronic pain conditions on the cellular and network level. Furthermore, we will elucidate the downstream targets that are influenced by the pain circuits in the ACC to generate the appropriate behavioural responses.
These aims will be achieved by a combination of electrophysiology, 2-photon Ca2+ imaging and pharmaco- and opto-genetic approaches both in vivo and in vitro and behavioural testing of pain affect in mice.
This project will give a comprehensive picture of how a cortical microcircuit processes afferent noxious stimuli to generate an affective behavioural response. This study will give important insight into the fundamental question of cortical information processing and it is highly relevant to understand pain processing and the changes in the network dynamics that manifest the transition to chronic pain. Eventually this might contribute to the development of novel treatment strategies for this pathological condition.
Max ERC Funding
1 928 125 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym CORYPHEE
Project Cold Rydbergs: photoionization, electronic spectroscopy and electrostatic trapping
Researcher (PI) Frédéric Merkt
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE4, ERC-2008-AdG
Summary Spectroscopic investigation of high (n >>20) molecular Rydberg states below and above the first adiabatic ionization threshold will be carried out with the aims of 1) obtaining fully resolved information on the vibrational, rotational, spin-orbit and hyperfine structures of these highly excited electronic states, 2) characterizing the role of nuclear spins in molecular photoionization, 3) determining the hyperfine structure of fundamental molecular cations at kHz resolution and accuracy by Rydberg series extrapolation, 4) measuring intervals between rovibrational levels of these molecular cations at sub MHz precision, 5) gaining a complete understanding, and providing an adequate description and classification, of angular momentum coupling (including nuclear spins) in high molecular Rydberg states, 6) testing theoretical predictions of the energy level structure of Rydberg molecules by ab initio multichannel quantum defect theory (MQDT) and of the rotational, vibrational and hyperfine levels of molecular cations by ab initio quantum chemistry and QED. The spectroscopic measurements using tunable narrow-band vacuum-ultraviolet and millimeter wave radiation sources will be performed on cold samples in supersonic beams as well as on trapped samples of translationally cold Rydberg atoms and molecules. To this end, our recent approach to trap H atoms in Rydberg states electrostatically (Hogan and Merkt, Phys. Rev. Lett. 100, 043001 (2008)) will be extended to molecules, and the possibility of transfering the trapped species from electrostatic traps to magnetic and optical traps will be explored.
Summary
Spectroscopic investigation of high (n >>20) molecular Rydberg states below and above the first adiabatic ionization threshold will be carried out with the aims of 1) obtaining fully resolved information on the vibrational, rotational, spin-orbit and hyperfine structures of these highly excited electronic states, 2) characterizing the role of nuclear spins in molecular photoionization, 3) determining the hyperfine structure of fundamental molecular cations at kHz resolution and accuracy by Rydberg series extrapolation, 4) measuring intervals between rovibrational levels of these molecular cations at sub MHz precision, 5) gaining a complete understanding, and providing an adequate description and classification, of angular momentum coupling (including nuclear spins) in high molecular Rydberg states, 6) testing theoretical predictions of the energy level structure of Rydberg molecules by ab initio multichannel quantum defect theory (MQDT) and of the rotational, vibrational and hyperfine levels of molecular cations by ab initio quantum chemistry and QED. The spectroscopic measurements using tunable narrow-band vacuum-ultraviolet and millimeter wave radiation sources will be performed on cold samples in supersonic beams as well as on trapped samples of translationally cold Rydberg atoms and molecules. To this end, our recent approach to trap H atoms in Rydberg states electrostatically (Hogan and Merkt, Phys. Rev. Lett. 100, 043001 (2008)) will be extended to molecules, and the possibility of transfering the trapped species from electrostatic traps to magnetic and optical traps will be explored.
Max ERC Funding
1 192 395 €
Duration
Start date: 2008-11-01, End date: 2013-10-31
Project acronym COSMICLENS
Project Cosmology with Strong Gravitational Lensing
Researcher (PI) Frederic Yves Michel COURBIN
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE9, ERC-2017-ADG
Summary Measuring cosmological distances has revolutionized our understanding of the Universe, and is still doing so! Early work in the 1920s led to the discovery of the expansion of the Universe. More precise distance measurements in the 90s with type-Ia supernovae revealed that this expansion is accelerating, with crucial consequences in cosmology and physics. Is the acceleration due to some repulsive form of dark energy? To Einstein's cosmological constant? Do we need to consider new physics? Answering these fundamental questions requires a precise measurement of the Hubble parameter, H0, which is my goal using the time delay (TD) method in strongly lensed quasars.
The TD method exploits well-known physics on galaxy-scales. It is one of the very few techniques that can yield H0 to <2% using a single methodology. It involves no calibration, and is truly independent of any other cosmological probe. Capitalizing on the successful pathfinders COSMOGRAIL (PI: Courbin) and H0LiCOW (PI: Suyu, CoI: Courbin) time has come to fully exploit TDs with an observational, modeling and technical boost, organized in 2 phases.
Phase I will secure H0 to 2% using the current chain of analysis, with feasible enhancements beyond the current state-of the-art. This will confirm or refute the tension seen between H0 values with different cosmological probes. Phase II targets 1% precision, improving the FoM of Stage-IV cosmological surveys by 40%. The 4 proposed Work Packages can transform the field within the next 5 years by 1- implementing the first high-cadence photometric monitoring of lensed quasars to measure 50 new TDs, 2- providing new flexible non-parameteric lens models based on sparse regularization of the reconstructed source and lens mass/light distributions, 3- providing a modular end-to-end simulation framework to mock lensed systems from hydro-simulations and to evaluate in detail the impact model degeneracies on H0, 4- discovering new suitable lensed quasars in current surveys.
Summary
Measuring cosmological distances has revolutionized our understanding of the Universe, and is still doing so! Early work in the 1920s led to the discovery of the expansion of the Universe. More precise distance measurements in the 90s with type-Ia supernovae revealed that this expansion is accelerating, with crucial consequences in cosmology and physics. Is the acceleration due to some repulsive form of dark energy? To Einstein's cosmological constant? Do we need to consider new physics? Answering these fundamental questions requires a precise measurement of the Hubble parameter, H0, which is my goal using the time delay (TD) method in strongly lensed quasars.
The TD method exploits well-known physics on galaxy-scales. It is one of the very few techniques that can yield H0 to <2% using a single methodology. It involves no calibration, and is truly independent of any other cosmological probe. Capitalizing on the successful pathfinders COSMOGRAIL (PI: Courbin) and H0LiCOW (PI: Suyu, CoI: Courbin) time has come to fully exploit TDs with an observational, modeling and technical boost, organized in 2 phases.
Phase I will secure H0 to 2% using the current chain of analysis, with feasible enhancements beyond the current state-of the-art. This will confirm or refute the tension seen between H0 values with different cosmological probes. Phase II targets 1% precision, improving the FoM of Stage-IV cosmological surveys by 40%. The 4 proposed Work Packages can transform the field within the next 5 years by 1- implementing the first high-cadence photometric monitoring of lensed quasars to measure 50 new TDs, 2- providing new flexible non-parameteric lens models based on sparse regularization of the reconstructed source and lens mass/light distributions, 3- providing a modular end-to-end simulation framework to mock lensed systems from hydro-simulations and to evaluate in detail the impact model degeneracies on H0, 4- discovering new suitable lensed quasars in current surveys.
Max ERC Funding
3 129 689 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym DAPP
Project Data-centric Parallel Programming
Researcher (PI) Torsten Hoefler
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), PE6, ERC-2015-STG
Summary We address a fundamental and increasingly important challenge in computer science: how to program large-scale heterogeneous parallel computers. Society relies on these computers to satisfy the growing demands of important applications such as drug design, weather prediction, and big data analytics. Architectural trends make heterogeneous parallel processors the fundamental building blocks of computing platforms ranging from quad-core laptops to million-core supercomputers; failing to exploit these architectures efficiently will severely limit the technological advance of our society. Computationally demanding problems are often inherently parallel and can readily be compiled for various target architectures. Yet, efficiently mapping data to the target memory system is notoriously hard, and the cost of fetching two operands from remote memory is already orders of magnitude more expensive than any arithmetic operation. Data access cost is growing with the amount of parallelism which makes data layout optimizations crucial. Prevalent parallel programming abstractions largely ignore data access and guide programmers to design threads of execution that are scheduled to the machine. We depart from this control-centric model to a data-centric program formulation where we express programs as collections of values, called memlets, that are mapped as first-class objects by the compiler and runtime system. Our holistic compiler and runtime system aims to substantially advance the state of the art in parallel computing by combining static and dynamic scheduling of memlets to complex heterogeneous target architectures. We will demonstrate our methods on three challenging real-world applications in scientific computing, data analytics, and graph processing. We strongly believe that, without holistic data-centric programming, the growing complexity and inefficiency of parallel programming will create a scaling wall that will limit our future computational capabilities.
Summary
We address a fundamental and increasingly important challenge in computer science: how to program large-scale heterogeneous parallel computers. Society relies on these computers to satisfy the growing demands of important applications such as drug design, weather prediction, and big data analytics. Architectural trends make heterogeneous parallel processors the fundamental building blocks of computing platforms ranging from quad-core laptops to million-core supercomputers; failing to exploit these architectures efficiently will severely limit the technological advance of our society. Computationally demanding problems are often inherently parallel and can readily be compiled for various target architectures. Yet, efficiently mapping data to the target memory system is notoriously hard, and the cost of fetching two operands from remote memory is already orders of magnitude more expensive than any arithmetic operation. Data access cost is growing with the amount of parallelism which makes data layout optimizations crucial. Prevalent parallel programming abstractions largely ignore data access and guide programmers to design threads of execution that are scheduled to the machine. We depart from this control-centric model to a data-centric program formulation where we express programs as collections of values, called memlets, that are mapped as first-class objects by the compiler and runtime system. Our holistic compiler and runtime system aims to substantially advance the state of the art in parallel computing by combining static and dynamic scheduling of memlets to complex heterogeneous target architectures. We will demonstrate our methods on three challenging real-world applications in scientific computing, data analytics, and graph processing. We strongly believe that, without holistic data-centric programming, the growing complexity and inefficiency of parallel programming will create a scaling wall that will limit our future computational capabilities.
Max ERC Funding
1 499 672 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym DeCode
Project Dendrites and memory: role of dendritic spikes in information coding by hippocampal CA3 pyramidal neurons
Researcher (PI) Judit MAKARA
Host Institution (HI) INSTITUTE OF EXPERIMENTAL MEDICINE - HUNGARIAN ACADEMY OF SCIENCES
Call Details Consolidator Grant (CoG), LS5, ERC-2017-COG
Summary The hippocampus is essential for building episodic memories. Coding of locations, contexts or events in the hippocampus is based on the correlated activity of neuronal ensembles; however, the mechanisms promoting the recruitment of individual neurons into information-coding ensembles are poorly understood.
In particular, the recurrent synaptic network of pyramidal cells (PCs) in the hippocampal CA3 area, receiving external inputs from the entorhinal cortex and the dentate gyrus, is thought to be essential for associative memory. Current models of the associative functions of CA3 are mainly based on plasticity of these synaptic connections. Recent work by us and others however suggests that active, voltage-dependent properties of CA3PC dendrites may also promote ensemble functions. Dendritic voltage-dependent ion channels allow nonlinear amplification of spatiotemporally correlated synaptic inputs (such as those produced by ensemble activity) and can even generate local dendritic spikes, which may elicit specific action potential patterns and induce synaptic plasticity. Furthermore, dendritic processing may be modulated by activity-dependent regulation of dendritic ion channels. However, still little is known about the active properties of CA3PC dendrites and their functions during spatial coding or memory tasks.
The general aim of my research program is to understand the cellular mechanisms that underlie the formation of hippocampal memory-coding neuronal ensembles. Specifically, we will test the hypothesis that active input integration by dendrites of individual CA3PCs plays an important role in their recruitment into specific context-coding ensembles. By combining in vitro (patch-clamp electrophysiology and two-photon (2P) microscopy in slices) and in vivo (2P imaging and activity-dependent labelling in behaving rodents) approaches, we will provide an in-depth understanding of the dendritic components contributing to the generation of the CA3 ensemble code.
Summary
The hippocampus is essential for building episodic memories. Coding of locations, contexts or events in the hippocampus is based on the correlated activity of neuronal ensembles; however, the mechanisms promoting the recruitment of individual neurons into information-coding ensembles are poorly understood.
In particular, the recurrent synaptic network of pyramidal cells (PCs) in the hippocampal CA3 area, receiving external inputs from the entorhinal cortex and the dentate gyrus, is thought to be essential for associative memory. Current models of the associative functions of CA3 are mainly based on plasticity of these synaptic connections. Recent work by us and others however suggests that active, voltage-dependent properties of CA3PC dendrites may also promote ensemble functions. Dendritic voltage-dependent ion channels allow nonlinear amplification of spatiotemporally correlated synaptic inputs (such as those produced by ensemble activity) and can even generate local dendritic spikes, which may elicit specific action potential patterns and induce synaptic plasticity. Furthermore, dendritic processing may be modulated by activity-dependent regulation of dendritic ion channels. However, still little is known about the active properties of CA3PC dendrites and their functions during spatial coding or memory tasks.
The general aim of my research program is to understand the cellular mechanisms that underlie the formation of hippocampal memory-coding neuronal ensembles. Specifically, we will test the hypothesis that active input integration by dendrites of individual CA3PCs plays an important role in their recruitment into specific context-coding ensembles. By combining in vitro (patch-clamp electrophysiology and two-photon (2P) microscopy in slices) and in vivo (2P imaging and activity-dependent labelling in behaving rodents) approaches, we will provide an in-depth understanding of the dendritic components contributing to the generation of the CA3 ensemble code.
Max ERC Funding
1 990 314 €
Duration
Start date: 2018-06-01, End date: 2023-05-31
Project acronym DEGLUMINATE
Project Light-Responsive Adhesives for Debond-on-Demand Solutions
Researcher (PI) Christoph Weder
Host Institution (HI) UNIVERSITE DE FRIBOURG
Call Details Proof of Concept (PoC), PC1, ERC-2015-PoC
Summary Adhesives that debond-on-demand through application of an external stimulus are highly relevant for manufacturing (semiconductor, automotive, aerospace, construction, packaging, sportswear), healthcare applications (wound dressing, transdermal patches), and numerous other domains, and they can significantly contribute to the sustainable use of materials (repairing, reworking, recycling). In all cases, there is a technological need for effective and environmentally benign solutions that provide secure adhesion during use, while also permitting for a simple and clean separation of bonded parts “on command” without the need for additional complex process steps.
The proposed project aims to develop new debond-on-demand adhesives based on the combination of low-molecular weight functional polymers and light-responsive degradable cross-linking agents. The new materials are expected to combine optimal adhesive properties for a wide range of substrates with a new mechanism that enables straightforward and efficient, ultraviolet light-induced debonding at ambient temperature. The debonding mechanism involves two different effects that are combined in a synergistic manner: the controlled degradation of the cross-linker transforms polymer networks into low-molecular weight polymers, and the simultaneous release of nitrogen gas “propels” the bonded parts away from each other. The degraded polymer residues can be easily removed and clean debonded components are furnished. The overarching goals of the proposed project are to bridge the gap between scientific discovery and implementation by (i) providing a better understanding for the mechanism at play; (ii) demonstrating the effect in a variety of adhesive platforms based on polymers that are employed in current adhesive technologies; and (iii) providing technology demonstrators for pressure-sensitive adhesive tapes and cold-cured two-component adhesives with debond-on-demand properties.
Summary
Adhesives that debond-on-demand through application of an external stimulus are highly relevant for manufacturing (semiconductor, automotive, aerospace, construction, packaging, sportswear), healthcare applications (wound dressing, transdermal patches), and numerous other domains, and they can significantly contribute to the sustainable use of materials (repairing, reworking, recycling). In all cases, there is a technological need for effective and environmentally benign solutions that provide secure adhesion during use, while also permitting for a simple and clean separation of bonded parts “on command” without the need for additional complex process steps.
The proposed project aims to develop new debond-on-demand adhesives based on the combination of low-molecular weight functional polymers and light-responsive degradable cross-linking agents. The new materials are expected to combine optimal adhesive properties for a wide range of substrates with a new mechanism that enables straightforward and efficient, ultraviolet light-induced debonding at ambient temperature. The debonding mechanism involves two different effects that are combined in a synergistic manner: the controlled degradation of the cross-linker transforms polymer networks into low-molecular weight polymers, and the simultaneous release of nitrogen gas “propels” the bonded parts away from each other. The degraded polymer residues can be easily removed and clean debonded components are furnished. The overarching goals of the proposed project are to bridge the gap between scientific discovery and implementation by (i) providing a better understanding for the mechanism at play; (ii) demonstrating the effect in a variety of adhesive platforms based on polymers that are employed in current adhesive technologies; and (iii) providing technology demonstrators for pressure-sensitive adhesive tapes and cold-cured two-component adhesives with debond-on-demand properties.
Max ERC Funding
149 250 €
Duration
Start date: 2016-06-01, End date: 2017-05-31
Project acronym Descent
Project Control of Action Diversification by Descending Motor CircuitsControl of action diversification by descending motor circuits
Researcher (PI) Silvia Arber
Host Institution (HI) FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH FONDATION
Call Details Advanced Grant (AdG), LS5, ERC-2015-AdG
Summary Movement is the behavioral output of the nervous system. Animals carry out an enormous repertoire of distinct actions, spanning from seemingly simple repetitive tasks like walking to much more complex movements such as forelimb manipulation tasks. An important question is how neuronal circuits are organized and function to choose, maintain, adjust and terminate these many distinct motor behaviors. Recent technological advances in neuroscience have made it possible to begin to unravel the links between the organization of specific neuronal circuit elements in the CNS and the control of movement, a topic that will be central to this research program.
While past work proposes that supraspinal centers in the brainstem are instrumental to the control of action diversification, little is known about how brainstem circuits translate movement intention to body control, how competing motor programs are selected, and how behavioral state influences movement control. The goal of this research project is to unravel the circuit blueprint of mouse descending motor pathways at a fine-scale level and to probe the intersection between revealed circuit organization and their behavioral function at many levels. The focus will be on studies on the interactions between brainstem neurons and spinal circuits to determine how initiation, duration, termination and selection of motor programs are implemented through specific neuronal subpopulations. Mapping descending connectivity matrices of motor circuits will serve as entry point and we will make use of state-of-the art intersectional technology including mouse genetics, viral approaches, in vivo neuronal recordings and activity manipulations of specific neuronal populations during behavior. Together, our project will elucidate the circuit organization and function of the descending motor output system and thereby uncover principles of how the nervous system generates diverse actions.
Summary
Movement is the behavioral output of the nervous system. Animals carry out an enormous repertoire of distinct actions, spanning from seemingly simple repetitive tasks like walking to much more complex movements such as forelimb manipulation tasks. An important question is how neuronal circuits are organized and function to choose, maintain, adjust and terminate these many distinct motor behaviors. Recent technological advances in neuroscience have made it possible to begin to unravel the links between the organization of specific neuronal circuit elements in the CNS and the control of movement, a topic that will be central to this research program.
While past work proposes that supraspinal centers in the brainstem are instrumental to the control of action diversification, little is known about how brainstem circuits translate movement intention to body control, how competing motor programs are selected, and how behavioral state influences movement control. The goal of this research project is to unravel the circuit blueprint of mouse descending motor pathways at a fine-scale level and to probe the intersection between revealed circuit organization and their behavioral function at many levels. The focus will be on studies on the interactions between brainstem neurons and spinal circuits to determine how initiation, duration, termination and selection of motor programs are implemented through specific neuronal subpopulations. Mapping descending connectivity matrices of motor circuits will serve as entry point and we will make use of state-of-the art intersectional technology including mouse genetics, viral approaches, in vivo neuronal recordings and activity manipulations of specific neuronal populations during behavior. Together, our project will elucidate the circuit organization and function of the descending motor output system and thereby uncover principles of how the nervous system generates diverse actions.
Max ERC Funding
2 500 000 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym DEVTAXNET
Project Tax Evasion in Developing Countries. The Role of Firm Networks
Researcher (PI) Dina Deborah POMERANZ
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Starting Grant (StG), SH1, ERC-2017-STG
Summary Tax evasion leads to billions of Euros of losses in government revenue around the world. This does not only affect public budgets, but can also create large distortions between activities that are fully taxed and others that escape taxation through evasion. These issues are particularly severe in developing countries, where evasion is especially high and governments struggle to raise funds for basic services and infrastructure, while at the same time trying to grow independent of international aid.
It is widely suspected that some of the most common and difficult to detect forms of evasion involve interactions across firm networks. However, due to severe data limitations, the existing literature has mostly considered taxpayers as isolated units. Empirical evidence on tax compliance in firm networks is extremely sparse.
This proposal describes 3 Sub-Projects to fill this gap. They are made possible thanks to access I have obtained -through five years of prior research and policy engagement– to unique datasets from Chile and Ecuador on both the networks of supply chains and of joint ownership structures.
The first Sub-Project focuses on international firm networks. It aims to analyze profit shifting of multinational firms to low tax jurisdictions, exploiting a natural experiment in Chile that strongly increased monitoring of international tax norms.
The second Sub-Project investigates the analogous issue at the intranational level: profit shifting and tax collusion in networks of firms within the same country. Despite much anecdotal evidence, this behavior has received little rigorous empirical scrutiny.
The final Sub-Project is situated at the nexus between international and national firms. It seeks to estimate a novel form of spillovers of FDI: the impact on tax compliance of local trading partners of foreign-owned firms.
DEVTAXNET will provide new insights about the role of firm networks for tax evasion that are valuable to academics and policy makers alike.
Summary
Tax evasion leads to billions of Euros of losses in government revenue around the world. This does not only affect public budgets, but can also create large distortions between activities that are fully taxed and others that escape taxation through evasion. These issues are particularly severe in developing countries, where evasion is especially high and governments struggle to raise funds for basic services and infrastructure, while at the same time trying to grow independent of international aid.
It is widely suspected that some of the most common and difficult to detect forms of evasion involve interactions across firm networks. However, due to severe data limitations, the existing literature has mostly considered taxpayers as isolated units. Empirical evidence on tax compliance in firm networks is extremely sparse.
This proposal describes 3 Sub-Projects to fill this gap. They are made possible thanks to access I have obtained -through five years of prior research and policy engagement– to unique datasets from Chile and Ecuador on both the networks of supply chains and of joint ownership structures.
The first Sub-Project focuses on international firm networks. It aims to analyze profit shifting of multinational firms to low tax jurisdictions, exploiting a natural experiment in Chile that strongly increased monitoring of international tax norms.
The second Sub-Project investigates the analogous issue at the intranational level: profit shifting and tax collusion in networks of firms within the same country. Despite much anecdotal evidence, this behavior has received little rigorous empirical scrutiny.
The final Sub-Project is situated at the nexus between international and national firms. It seeks to estimate a novel form of spillovers of FDI: the impact on tax compliance of local trading partners of foreign-owned firms.
DEVTAXNET will provide new insights about the role of firm networks for tax evasion that are valuable to academics and policy makers alike.
Max ERC Funding
1 288 125 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym DISCRETECONT
Project From discrete to contimuous: understanding discrete structures through continuous approximation
Researcher (PI) László Lovász
Host Institution (HI) EOTVOS LORAND TUDOMANYEGYETEM
Call Details Advanced Grant (AdG), PE1, ERC-2008-AdG
Summary Important methods and results in discrete mathematics arise from the interaction between discrete mathematics and ``continuous'' areas like analysis or geometry. Classical examples of this include topological methods, linear and semidefinite optimization generating functions and more. More recent areas stressing this connection are the theory of limit objects of growing sequences of finite structures (graphs, hypergraphs, sequences), differential equations on networks, geometric representations of graphs. Perhaps most promising is the study of limits of growing graph and hypergraph sequences. In resent work by the Proposer and his collaborators, this area has found highly nontrivial connections with extremal graph theory, the theory of property testing in computer science, to additive number theory, the theory of random graphs, and measure theory as well as geometric representations of graphs. This proposal's goal is to explore these interactions, with the participation of a number of researchers from different areas of mathematics.
Summary
Important methods and results in discrete mathematics arise from the interaction between discrete mathematics and ``continuous'' areas like analysis or geometry. Classical examples of this include topological methods, linear and semidefinite optimization generating functions and more. More recent areas stressing this connection are the theory of limit objects of growing sequences of finite structures (graphs, hypergraphs, sequences), differential equations on networks, geometric representations of graphs. Perhaps most promising is the study of limits of growing graph and hypergraph sequences. In resent work by the Proposer and his collaborators, this area has found highly nontrivial connections with extremal graph theory, the theory of property testing in computer science, to additive number theory, the theory of random graphs, and measure theory as well as geometric representations of graphs. This proposal's goal is to explore these interactions, with the participation of a number of researchers from different areas of mathematics.
Max ERC Funding
739 671 €
Duration
Start date: 2009-01-01, End date: 2014-06-30
Project acronym DrEAM
Project Directed Evolution of Artificial Metalloenzymes for In Vivo Applications
Researcher (PI) Thomas WARD
Host Institution (HI) UNIVERSITAT BASEL
Call Details Advanced Grant (AdG), PE5, ERC-2015-AdG
Summary In the past decade, artificial metalloenzymes (AMs) have emerged as an attractive alternative to the more traditional enzymes and homogeneous catalysts. Such hybrid catalysts result from the incorporation of an abiotic metal cofactor within a macromolecule (protein or oligonucleotide). Artificial metalloenzymes combine attractive features of both homogeneous catalysts and enzymes, including the possibility to genetically optimize the catalytic performance of new-to-nature organometallic reactions. Can artificial metalloenzymes become as catalytically efficient as naturally-evolved metalloenzymes, even in complex biological mixtures? Herein, we outline our efforts to address this challenge by localizing and evolving AMs within the periplasm of Escherichia coli.
To achieve this objective, we will exploit AMs based on the biotin-streptavidin technology. Four subprojects have been tailored to address the challenges: i) knock-out deleterious components present in the periplasm; ii) improve the cofactor uptake through the outer-membrane; iii) engineer streptavidin to boost the AM’s performance; and iv) rely both on screening and selection strategies to evolve AMs in vivo. Relying on auxotrophs, we will demonstrate the potential of AMs to complement metabolic pathways. Only E. coli auxotrophs containing an evolved AM capable of producing the vital aminoacid-precursor will survive the stringent selection pressure. We have identified several selectable aminoacid precursors which can be produced by metathesis (indole, precursor of tryptophan), enone reduction (keto valine, precursor of valine) and allylic substitution (prephenate, precursor of tyrosine and phenylalanine). In a Darwinian evolution spirit, we anticipate that applying selection pressure will allow to evolve AMs to unprecedented catalytic performance.
The main deliverable of the DrEAM is an engineered and evolvable E. coli strain capable of performing in vivo reaction cascades combining AMs and natural enzymes.
Summary
In the past decade, artificial metalloenzymes (AMs) have emerged as an attractive alternative to the more traditional enzymes and homogeneous catalysts. Such hybrid catalysts result from the incorporation of an abiotic metal cofactor within a macromolecule (protein or oligonucleotide). Artificial metalloenzymes combine attractive features of both homogeneous catalysts and enzymes, including the possibility to genetically optimize the catalytic performance of new-to-nature organometallic reactions. Can artificial metalloenzymes become as catalytically efficient as naturally-evolved metalloenzymes, even in complex biological mixtures? Herein, we outline our efforts to address this challenge by localizing and evolving AMs within the periplasm of Escherichia coli.
To achieve this objective, we will exploit AMs based on the biotin-streptavidin technology. Four subprojects have been tailored to address the challenges: i) knock-out deleterious components present in the periplasm; ii) improve the cofactor uptake through the outer-membrane; iii) engineer streptavidin to boost the AM’s performance; and iv) rely both on screening and selection strategies to evolve AMs in vivo. Relying on auxotrophs, we will demonstrate the potential of AMs to complement metabolic pathways. Only E. coli auxotrophs containing an evolved AM capable of producing the vital aminoacid-precursor will survive the stringent selection pressure. We have identified several selectable aminoacid precursors which can be produced by metathesis (indole, precursor of tryptophan), enone reduction (keto valine, precursor of valine) and allylic substitution (prephenate, precursor of tyrosine and phenylalanine). In a Darwinian evolution spirit, we anticipate that applying selection pressure will allow to evolve AMs to unprecedented catalytic performance.
The main deliverable of the DrEAM is an engineered and evolvable E. coli strain capable of performing in vivo reaction cascades combining AMs and natural enzymes.
Max ERC Funding
2 490 700 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym DROSOPHILASIGNALING
Project Signaling Pathways Controlling Patterning, Growth and Final Size of Drosophila Limbs
Researcher (PI) Konrad Basler
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Advanced Grant (AdG), LS3, ERC-2008-AdG
Summary Developmental biology seeks not only to learn more about the fundamental processes of growth and pattern per se, but to understand how they synergize to enable the morphogenesis of multicellular organisms. Our goal is to perform real-time analyses of these developmental processes in an intact developing organ. By applying a vital imaging approach, we can circumvent the normal limitations of inferring cellular dynamics from static images or molecular data, and obtain the real dynamic view of growth and patterning. The wing imaginal disc of Drosophila, which starts out as a simple epithelial structure and gives rise to a precisely structured adult limb, will serve as an ideal model system. This system has the combined advantages of relative simplicity and genetic tractability. We will create several innovations that expand the current toolkit and thus facilitate the detailed dissection of growth and patterning. A key early step will be to develop novel reporters to dynamically and faithfully monitor signaling cascades involved in growth and patterning, such as the Dpp and Hippo pathways. We will also implement quantification techniques that are currently being set up in collaboration with an experimental physicist, to deduce, and alter, the mechanical forces that develop in the cells of a growing tissue. The large amount of quantitative data that will be generated allow us derive computational models of the individual pathways and their interaction. The focus of the study will be to answer the following questions: 1) Is the Hippo pathway regulated spatially and temporally, and by what signaling pathways? 2) Do mechanical forces play a pivotal controlling role in organ morphogenesis? 3) What are the global effects on growth, when pathways controlling patterning, cell competition or compensatory proliferation are perturbed? The proposed project will bring the approaches taken to define the mechanisms underlying and controlling growth and patterning to the next level.
Summary
Developmental biology seeks not only to learn more about the fundamental processes of growth and pattern per se, but to understand how they synergize to enable the morphogenesis of multicellular organisms. Our goal is to perform real-time analyses of these developmental processes in an intact developing organ. By applying a vital imaging approach, we can circumvent the normal limitations of inferring cellular dynamics from static images or molecular data, and obtain the real dynamic view of growth and patterning. The wing imaginal disc of Drosophila, which starts out as a simple epithelial structure and gives rise to a precisely structured adult limb, will serve as an ideal model system. This system has the combined advantages of relative simplicity and genetic tractability. We will create several innovations that expand the current toolkit and thus facilitate the detailed dissection of growth and patterning. A key early step will be to develop novel reporters to dynamically and faithfully monitor signaling cascades involved in growth and patterning, such as the Dpp and Hippo pathways. We will also implement quantification techniques that are currently being set up in collaboration with an experimental physicist, to deduce, and alter, the mechanical forces that develop in the cells of a growing tissue. The large amount of quantitative data that will be generated allow us derive computational models of the individual pathways and their interaction. The focus of the study will be to answer the following questions: 1) Is the Hippo pathway regulated spatially and temporally, and by what signaling pathways? 2) Do mechanical forces play a pivotal controlling role in organ morphogenesis? 3) What are the global effects on growth, when pathways controlling patterning, cell competition or compensatory proliferation are perturbed? The proposed project will bring the approaches taken to define the mechanisms underlying and controlling growth and patterning to the next level.
Max ERC Funding
2 310 000 €
Duration
Start date: 2009-02-01, End date: 2014-01-31
Project acronym DUVlight
Project Development of a compact, user-friendly and cost effective source for the generation of powerful and broad ultrashort pulses in the deep-UV
Researcher (PI) Andrea CANNIZZO
Host Institution (HI) UNIVERSITAET BERN
Call Details Proof of Concept (PoC), ERC-2017-PoC
Summary Here we present an original design of a compact and portable set-up able to generate very broadband (70-100 nm at 300 nm) and powerful (>1uJ/pulse) ultrashort deep-UV pulses. Compared with other schemes, it guarantees an aberration-free propagation, an easy installation and minimal dispersion. The present project aims to bring the current prototype to the level of a commercial device. The conceived design will allow to manufacture a compact, portable and cost effective device, which will be user-friendly and with almost no required maintenance.
There is no such a source commercially available and the schemes proposed in scientific literature require an advanced level of competence in optics and laser physics, are not cost effective and unsuitable for industrial applications.
There is thus a need of sources for ultrafast broadband radiation in the deep-UV to advance and enable new ultrafast science and extend into this spectral range the technological application of ultrafast laser sources. The implementation of the proposed device will definitively fill this gap.
Summary
Here we present an original design of a compact and portable set-up able to generate very broadband (70-100 nm at 300 nm) and powerful (>1uJ/pulse) ultrashort deep-UV pulses. Compared with other schemes, it guarantees an aberration-free propagation, an easy installation and minimal dispersion. The present project aims to bring the current prototype to the level of a commercial device. The conceived design will allow to manufacture a compact, portable and cost effective device, which will be user-friendly and with almost no required maintenance.
There is no such a source commercially available and the schemes proposed in scientific literature require an advanced level of competence in optics and laser physics, are not cost effective and unsuitable for industrial applications.
There is thus a need of sources for ultrafast broadband radiation in the deep-UV to advance and enable new ultrafast science and extend into this spectral range the technological application of ultrafast laser sources. The implementation of the proposed device will definitively fill this gap.
Max ERC Funding
140 625 €
Duration
Start date: 2018-01-01, End date: 2019-06-30
Project acronym DYNAMOX
Project Charge carrier dynamics in metal oxides
Researcher (PI) Majed CHERGUI
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE4, ERC-2015-AdG
Summary Transition metal (TM) oxides (TiO2, ZnO, NiO) are large gap insulators that have emerged as highly attractive materials over the past two decades for applications in photocatalysis, solar energy conversion, etc., all of which rely on the generation of charge carriers, their evolution and their eventual trapping at defects or a self-trapped excitons. Despite the huge interest for such materials, the very nature of the elementary electronic excitations (Frenkel, Wannier or charge transfer exciton) is still not established, nor is the way these excitations evolve after being created: excitonic polaron or charged polaron. Finally, the electron and hole recombine is also not clearly established because of issue of defects and trapping.
In order to tackle these issues, here we implement novel experimental tools that would provide us with hitherto inaccessible information about the charge carrier dynamics in TM oxides. Of importance is the ability to detect both the electrons and the holes. Some of these tools have been developed in the PI’s group: i) Ultrafast X-ray absorption spectroscopy (XAS) will provide information about the final metal d-orbitals and about the structural changes around it; ii) Ultrafast X-ray emission (XES) will provide information about hole states. While these two approaches are ideal element-selective ones, the localization of the electron at metal atoms represents a small proportion of the electron population. Therefore, ultrafast Angle-resolved photoemission spectroscopy (ARPES) will be used to map out the band structure changes in the system and the evolution of the conduction band electrons. Ultrafast 2-dimensional (2D) UV (<400nm) transient absorption spectroscopy allows the mapping of the time evolution of both the valence and the conduction bands by its ability to pump and probe above the band gap. Last, Fourier Transform visible 2D spectroscopy will allow the probing of gap state dynamics at high time resolution.
Summary
Transition metal (TM) oxides (TiO2, ZnO, NiO) are large gap insulators that have emerged as highly attractive materials over the past two decades for applications in photocatalysis, solar energy conversion, etc., all of which rely on the generation of charge carriers, their evolution and their eventual trapping at defects or a self-trapped excitons. Despite the huge interest for such materials, the very nature of the elementary electronic excitations (Frenkel, Wannier or charge transfer exciton) is still not established, nor is the way these excitations evolve after being created: excitonic polaron or charged polaron. Finally, the electron and hole recombine is also not clearly established because of issue of defects and trapping.
In order to tackle these issues, here we implement novel experimental tools that would provide us with hitherto inaccessible information about the charge carrier dynamics in TM oxides. Of importance is the ability to detect both the electrons and the holes. Some of these tools have been developed in the PI’s group: i) Ultrafast X-ray absorption spectroscopy (XAS) will provide information about the final metal d-orbitals and about the structural changes around it; ii) Ultrafast X-ray emission (XES) will provide information about hole states. While these two approaches are ideal element-selective ones, the localization of the electron at metal atoms represents a small proportion of the electron population. Therefore, ultrafast Angle-resolved photoemission spectroscopy (ARPES) will be used to map out the band structure changes in the system and the evolution of the conduction band electrons. Ultrafast 2-dimensional (2D) UV (<400nm) transient absorption spectroscopy allows the mapping of the time evolution of both the valence and the conduction bands by its ability to pump and probe above the band gap. Last, Fourier Transform visible 2D spectroscopy will allow the probing of gap state dynamics at high time resolution.
Max ERC Funding
2 482 305 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym E-DURA
Project Commercialization of novel soft neural interfaces
Researcher (PI) Stéphanie LACOUR
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Proof of Concept (PoC), ERC-2017-PoC
Summary E-DURA aims to assess the commercial viability of a new class of soft, multimodal neural implants called e-dura. Current technologies are rigid and present physical, electrochemical and biological mismatches that prevent prolonged periods of implantation. Our technology represents a significant improvement over state-of-art on all those criteria. Moreover, our extensive network of academics and industry professionals represents an advantage in commercializing e-dura, thereby addressing a market estimated to reach 11.8 billion Euro by 2020. Within E-DURA, we will prototype a device suitable for human implantation and build the business case around our innovation.
Summary
E-DURA aims to assess the commercial viability of a new class of soft, multimodal neural implants called e-dura. Current technologies are rigid and present physical, electrochemical and biological mismatches that prevent prolonged periods of implantation. Our technology represents a significant improvement over state-of-art on all those criteria. Moreover, our extensive network of academics and industry professionals represents an advantage in commercializing e-dura, thereby addressing a market estimated to reach 11.8 billion Euro by 2020. Within E-DURA, we will prototype a device suitable for human implantation and build the business case around our innovation.
Max ERC Funding
149 994 €
Duration
Start date: 2018-09-01, End date: 2020-02-29
Project acronym ECC SCIENG
Project Error-correcting codes and their applications in Science and Engineering
Researcher (PI) Mohammad Amin Shokrollahi
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE6, ERC-2008-AdG
Summary Error correcting codes are combinatorial objects which have traditionally been used to enhance the transmission of data on unreliable media. They have experienced a phenomenal growth since their birth some fifty years ago. Today, everyday tasks such as listening to a CD, accessing the hard disk of an electronic device, talking on a wireless phone, or downloading files from the Internet are impossible without the use of error-correcting codes. Though traditional communication still occupies centerstage in the realm of applied coding theory, emerging applications are changing the rules of the game, and calling for a new type of coding theory capable of addressing future needs. These are not limited to physical applications, however. In fact, coding theory is an integral part of solutions offered by researchers outside traditional physical communication to solve fundamental problems of interest, such as the complexity of computation, reliable transfer of bulk data, cryptographic protocols, self correcting software, signal processing, or even computational biology.While research in the past fifty years has put traditional coding theory on firm theoretical grounds, emerging applications are in need of new tools and methods to design, analyze, and implement coding technologies capable of dealing with future needs. This is the main concern of the present proposal. To strike the right balance between length and impact we have identified five areas of research that span the full spectrum of coding theory ranging from fundamental theoretical aspects to practical applications. We set out to develop new theoretical and practical models for the design and analysis of codes, and explore new application areas hitherto untouched. A unique feature of this proposal is our choice of the tools, ranging from classical areas of algebra, combinatorics, and probability theory, to ideas and methods from theoretical computer science.
Summary
Error correcting codes are combinatorial objects which have traditionally been used to enhance the transmission of data on unreliable media. They have experienced a phenomenal growth since their birth some fifty years ago. Today, everyday tasks such as listening to a CD, accessing the hard disk of an electronic device, talking on a wireless phone, or downloading files from the Internet are impossible without the use of error-correcting codes. Though traditional communication still occupies centerstage in the realm of applied coding theory, emerging applications are changing the rules of the game, and calling for a new type of coding theory capable of addressing future needs. These are not limited to physical applications, however. In fact, coding theory is an integral part of solutions offered by researchers outside traditional physical communication to solve fundamental problems of interest, such as the complexity of computation, reliable transfer of bulk data, cryptographic protocols, self correcting software, signal processing, or even computational biology.While research in the past fifty years has put traditional coding theory on firm theoretical grounds, emerging applications are in need of new tools and methods to design, analyze, and implement coding technologies capable of dealing with future needs. This is the main concern of the present proposal. To strike the right balance between length and impact we have identified five areas of research that span the full spectrum of coding theory ranging from fundamental theoretical aspects to practical applications. We set out to develop new theoretical and practical models for the design and analysis of codes, and explore new application areas hitherto untouched. A unique feature of this proposal is our choice of the tools, ranging from classical areas of algebra, combinatorics, and probability theory, to ideas and methods from theoretical computer science.
Max ERC Funding
1 959 998 €
Duration
Start date: 2009-04-01, End date: 2013-03-31
Project acronym Ecol of interactions
Project Developing the predictive ecology of plant-animal interactions across space and time
Researcher (PI) Catherine GRAHAM
Host Institution (HI) EIDGENOESSISCHE FORSCHUNGSANSTALT WSL
Call Details Advanced Grant (AdG), LS8, ERC-2017-ADG
Summary In the face of the alarming pace of recent environmental change we lack the tools to accurately predict how biodiversity and ecosystem services will respond. One key gap in knowledge that limits our predictive ability is uncertainty concerning how the biotic interactions will change. Developing a predictive science of species interactions requires integrating evolutionary, biogeographic and ecological mechanisms acting at different spatial and temporal scales. We will use a hierarchical cross-scale approach, combining phylogeography, network ecology, statistical modelling and experiments, to disentangle the mechanisms governing species richness and mutualistic interactions in tropical hummingbirds and their food plants. Hummingbirds and their food plants are an excellent model system because they are highly diverse, highly specialized, and logistically feasible to study. Our objectives are to (1) evaluate the influence of factors, such as trait-matching, environmental conditions and relatedness, on network structure; (2) quantify how and why interaction beta-diversity (i.e., reflecting the change in both species composition, and in interacting partners) changes across elevation gradients in each of three biogeographic regions with distinct evolutionary histories (mountain regions in Costa Rica, Ecuador, Brazil); (3) evaluate the importance of multiple factors, such as trait-matching, environmental conditions, relatedness and abundance, on species interactions and network structure; and (4) develop a predictive model of species interactions and evaluate its performance using cross-validation and experimentation. Together, these tasks will provide new insight into one of the central enigmas in ecology, namely, why species diversity and its interaction architecture change across space and time. We will also be able predict how species interactions will change from present to the future, which is essential for the conservation of biodiversity and ecosystem services.
Summary
In the face of the alarming pace of recent environmental change we lack the tools to accurately predict how biodiversity and ecosystem services will respond. One key gap in knowledge that limits our predictive ability is uncertainty concerning how the biotic interactions will change. Developing a predictive science of species interactions requires integrating evolutionary, biogeographic and ecological mechanisms acting at different spatial and temporal scales. We will use a hierarchical cross-scale approach, combining phylogeography, network ecology, statistical modelling and experiments, to disentangle the mechanisms governing species richness and mutualistic interactions in tropical hummingbirds and their food plants. Hummingbirds and their food plants are an excellent model system because they are highly diverse, highly specialized, and logistically feasible to study. Our objectives are to (1) evaluate the influence of factors, such as trait-matching, environmental conditions and relatedness, on network structure; (2) quantify how and why interaction beta-diversity (i.e., reflecting the change in both species composition, and in interacting partners) changes across elevation gradients in each of three biogeographic regions with distinct evolutionary histories (mountain regions in Costa Rica, Ecuador, Brazil); (3) evaluate the importance of multiple factors, such as trait-matching, environmental conditions, relatedness and abundance, on species interactions and network structure; and (4) develop a predictive model of species interactions and evaluate its performance using cross-validation and experimentation. Together, these tasks will provide new insight into one of the central enigmas in ecology, namely, why species diversity and its interaction architecture change across space and time. We will also be able predict how species interactions will change from present to the future, which is essential for the conservation of biodiversity and ecosystem services.
Max ERC Funding
2 499 930 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym eDrop
Project Droplet Photoelectron Imaging
Researcher (PI) Ruth Signorell Luckhaus
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE4, ERC-2017-ADG
Summary Angle-resolved photoelectron spectroscopy of aerosol droplets (“droplet photoelectron imaging”) is a novel approach to study fundamental aspects of the electron dynamics in liquids and across interfaces. Our recent proof-of-principle studies demonstrate that droplet photoelectron imaging not only complements, but also significantly extends the range of accessible information over established methods. Two aspects are unique to droplets: Firstly, the droplet size can be varied over a wide range from submicrons to microns. While large droplets provide overlap with liquid microjet and bulk studies, small droplets offer additional control by acting as efficient optical resonators. These optical cavity effects can be exploited to control where in the droplet the photoelectrons are generated; e.g. surface versus volume. Secondly, comprehensive information about photoelectron kinetic energy and angular distributions can be obtained fast and in a straightforward way by velocity map imaging.
Building on our proof-of-principle studies, we propose to exploit the versatility of the droplet approach to address fundamental questions regarding electron dynamics in liquids and across interfaces: Can this new tool provide the missing data for low-energy electron scattering in water and other liquids and resolve the issue of the “universal curve”? How do slow electrons scatter across liquid-gas and buried liquid-liquid/solid interfaces and how does this depend on the composition and curvature of the interface? How is the ultrafast relaxation dynamics of electrons following above-band-gap excitation influenced by electron scattering and confinement effects? Low-energy electron scattering is a determining factor in radiation chemistry and biology and a central aspect of the solvated electron dynamics, while interfacial processes play a key role in atmospheric aerosols. Droplet photoelectron imaging opens up new ways to study such phenomena.
Summary
Angle-resolved photoelectron spectroscopy of aerosol droplets (“droplet photoelectron imaging”) is a novel approach to study fundamental aspects of the electron dynamics in liquids and across interfaces. Our recent proof-of-principle studies demonstrate that droplet photoelectron imaging not only complements, but also significantly extends the range of accessible information over established methods. Two aspects are unique to droplets: Firstly, the droplet size can be varied over a wide range from submicrons to microns. While large droplets provide overlap with liquid microjet and bulk studies, small droplets offer additional control by acting as efficient optical resonators. These optical cavity effects can be exploited to control where in the droplet the photoelectrons are generated; e.g. surface versus volume. Secondly, comprehensive information about photoelectron kinetic energy and angular distributions can be obtained fast and in a straightforward way by velocity map imaging.
Building on our proof-of-principle studies, we propose to exploit the versatility of the droplet approach to address fundamental questions regarding electron dynamics in liquids and across interfaces: Can this new tool provide the missing data for low-energy electron scattering in water and other liquids and resolve the issue of the “universal curve”? How do slow electrons scatter across liquid-gas and buried liquid-liquid/solid interfaces and how does this depend on the composition and curvature of the interface? How is the ultrafast relaxation dynamics of electrons following above-band-gap excitation influenced by electron scattering and confinement effects? Low-energy electron scattering is a determining factor in radiation chemistry and biology and a central aspect of the solvated electron dynamics, while interfacial processes play a key role in atmospheric aerosols. Droplet photoelectron imaging opens up new ways to study such phenomena.
Max ERC Funding
2 500 000 €
Duration
Start date: 2018-11-01, End date: 2023-10-31
Project acronym ElectroGene
Project Electrogenetics – Shaping Electrogenetic Interfaces for Closed-Loop Voltage-Controlled Gene Expression
Researcher (PI) Martin Fussenegger
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), LS9, ERC-2017-ADG
Summary Man and man-made electronic systems share the same ecosystem, and yet work radically differently. Human metabolism uses ion gradients across insulated membranes to simultaneously process slow analog chemical reactions and communicate information in multicellular systems via soluble/volatile molecular signals. By contrast, electronic systems use multicore central processing units to control the flow of electrons through insulated metal wires with gigahertz frequency and communicate information across networks via wired/wireless connections. With the advent of the internet of things, networks of interconnected electronic devices will reach the processing complexity of living systems, yet they remain largely incompatible with biological systems. Wearable electronics can profile physical parameters such as steps and heartbeat, and Google’s proposal to develop glucose-monitoring contact lenses has triggered a wave of interest in harnessing the full potential of bioelectronics for medical applications. Yet this vision remains limited to diagnostics. Capitalizing on our mind-controlled and smartphone-adjustable optogenetic drug-dosing devices, ElectroGene will establish the foundations of electrogenetics, the science of creating electro-genetic interfaces that enable direct two-way communication between electronic devices and living cells. ElectroGene consists of three pillars, (i) voltage-triggered gene expression, (ii) genetically programmed electronics and (iii) wireless-powered implants providing closed-loop bioelectronic control, which allow real-time monitoring of metabolic conditions (diagnosis), enable remote-controlled production and dosing of protein therapeutics by implanted designer cells (treatment), and manage closed-loop control between cells and electronics, thus linking diagnosis and therapy to block disease onset (prevention). ElectroGene design principles and devices will be validated in proof-of-concept preclinical studies for the treatment of diabetes.
Summary
Man and man-made electronic systems share the same ecosystem, and yet work radically differently. Human metabolism uses ion gradients across insulated membranes to simultaneously process slow analog chemical reactions and communicate information in multicellular systems via soluble/volatile molecular signals. By contrast, electronic systems use multicore central processing units to control the flow of electrons through insulated metal wires with gigahertz frequency and communicate information across networks via wired/wireless connections. With the advent of the internet of things, networks of interconnected electronic devices will reach the processing complexity of living systems, yet they remain largely incompatible with biological systems. Wearable electronics can profile physical parameters such as steps and heartbeat, and Google’s proposal to develop glucose-monitoring contact lenses has triggered a wave of interest in harnessing the full potential of bioelectronics for medical applications. Yet this vision remains limited to diagnostics. Capitalizing on our mind-controlled and smartphone-adjustable optogenetic drug-dosing devices, ElectroGene will establish the foundations of electrogenetics, the science of creating electro-genetic interfaces that enable direct two-way communication between electronic devices and living cells. ElectroGene consists of three pillars, (i) voltage-triggered gene expression, (ii) genetically programmed electronics and (iii) wireless-powered implants providing closed-loop bioelectronic control, which allow real-time monitoring of metabolic conditions (diagnosis), enable remote-controlled production and dosing of protein therapeutics by implanted designer cells (treatment), and manage closed-loop control between cells and electronics, thus linking diagnosis and therapy to block disease onset (prevention). ElectroGene design principles and devices will be validated in proof-of-concept preclinical studies for the treatment of diabetes.
Max ERC Funding
2 500 000 €
Duration
Start date: 2018-11-01, End date: 2023-10-31
Project acronym ELITES08
Project Culturally Composite Elites, Regime Changes and Social Crises in Multi-Ethnic and Multi-Confessional Eastern Europe. (The Carpathian Basin and the Baltics in Comparison - cc. 1900-1950)
Researcher (PI) Gyozo István Karády
Host Institution (HI) KOZEP-EUROPAI EGYETEM
Call Details Advanced Grant (AdG), SH6, ERC-2008-AdG
Summary The project is multi-disciplinary by character. It focuses upon socio-historical processes of the transformation and 'circulation' of educated and ruling elites in several uniquely composite (both multi-ethnic and multi-confessional) East European regional or national societies, having experienced a number of radical changes of social and political regime as well as state souvereignty in the first half of the 20th century. The historical scope of the study extends from post-feudalism to communism. Societies involved comprise Hungary, Slovakia, Transylvania, Voivodina in the Carpathian Basin, Latvia and Estonia in the Baltics. The study draws upon sociological survey methods applied to historically successive elite brackets in form of exhaustive or quasi-exhaustive computerized prosopographical data banks, based on standardized individual biographies of elite members (as permitted by mostly archival sources to be exploited). The main targets would include secondary school graduates, students and graduates of higher education, the main intellectual professions (like doctors and lawyers.), the political power elites as well as 'reputational elites' - those cited in biographical dictionaries. The information fed into our data banks help to clarify thanks to various procedures of multi-variate statistical schemes the contrasting socio-cultural selection and recruitment of elite members, their educational path from primary to higher education, their professional career, intellectual creativity as well as socio-political standing and orientation. This is the first time that large region- or country-wide elite clusters are submitted to systematic socio-historical analyses, covering simultaneously all or most markets of activity and self-assertion of educated clusters in a vast international and comparative perspective related to culturally composite societal formations.
Summary
The project is multi-disciplinary by character. It focuses upon socio-historical processes of the transformation and 'circulation' of educated and ruling elites in several uniquely composite (both multi-ethnic and multi-confessional) East European regional or national societies, having experienced a number of radical changes of social and political regime as well as state souvereignty in the first half of the 20th century. The historical scope of the study extends from post-feudalism to communism. Societies involved comprise Hungary, Slovakia, Transylvania, Voivodina in the Carpathian Basin, Latvia and Estonia in the Baltics. The study draws upon sociological survey methods applied to historically successive elite brackets in form of exhaustive or quasi-exhaustive computerized prosopographical data banks, based on standardized individual biographies of elite members (as permitted by mostly archival sources to be exploited). The main targets would include secondary school graduates, students and graduates of higher education, the main intellectual professions (like doctors and lawyers.), the political power elites as well as 'reputational elites' - those cited in biographical dictionaries. The information fed into our data banks help to clarify thanks to various procedures of multi-variate statistical schemes the contrasting socio-cultural selection and recruitment of elite members, their educational path from primary to higher education, their professional career, intellectual creativity as well as socio-political standing and orientation. This is the first time that large region- or country-wide elite clusters are submitted to systematic socio-historical analyses, covering simultaneously all or most markets of activity and self-assertion of educated clusters in a vast international and comparative perspective related to culturally composite societal formations.
Max ERC Funding
771 628 €
Duration
Start date: 2009-01-01, End date: 2012-03-31
Project acronym ENTRAINER
Project Enhancing brain function and cognition via artificial entrainment of neural oscillations
Researcher (PI) Rafael POLANIA
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), LS5, ERC-2017-STG
Summary Neural oscillations are ubiquitous in the human brain and have been implicated in diverse cognitive functions to support both neural communication and plasticity. Their functional relevance is further supported by a large number of studies linking various cognitive deficits (e.g., attention deficit hyperactivity disorder, ADHD) with abnormal neural oscillations. However, this field of research faces two important problems: First, there is only correlative, but no causal evidence linking cognitive deficits to abnormal neural oscillations in humans. Second, there is virtually no theory-driven mechanistic approach that generates insights into how oscillations within and across neural networks are linked to human behavior. In this project, I propose to take decisive steps to provide a long-needed neurophysiological characterization—via (1) computational modelling, (2) electrophysiological measures, and (3) novel non-invasive manipulations of cortical rhythms—on how neural oscillations contribute to two types of cognitive processes that are fundamental for many aspects of human behavior: attention and short-term memory. I will go a step further by demonstrating that it is possible to augment performance in these cognitive functions with the design of non-invasive brain stimulation protocols individually tailored to the theory-driven neurocomputational characterizations and electrophysiological signatures of each individual. This will result in the applied goal of deriving new neuro-computational assays that can detect deviant network interactions causally related to cognitive functions, which is key for then renormalizing those functions in neuropsychological conditions such as ADHD. Thus, if successful, my proposed work will ultimately result in novel, low-cost, and painless non-invasive neural interventions for a wide range of neuropsychological disorders tied to abnormal neural oscillations.
Summary
Neural oscillations are ubiquitous in the human brain and have been implicated in diverse cognitive functions to support both neural communication and plasticity. Their functional relevance is further supported by a large number of studies linking various cognitive deficits (e.g., attention deficit hyperactivity disorder, ADHD) with abnormal neural oscillations. However, this field of research faces two important problems: First, there is only correlative, but no causal evidence linking cognitive deficits to abnormal neural oscillations in humans. Second, there is virtually no theory-driven mechanistic approach that generates insights into how oscillations within and across neural networks are linked to human behavior. In this project, I propose to take decisive steps to provide a long-needed neurophysiological characterization—via (1) computational modelling, (2) electrophysiological measures, and (3) novel non-invasive manipulations of cortical rhythms—on how neural oscillations contribute to two types of cognitive processes that are fundamental for many aspects of human behavior: attention and short-term memory. I will go a step further by demonstrating that it is possible to augment performance in these cognitive functions with the design of non-invasive brain stimulation protocols individually tailored to the theory-driven neurocomputational characterizations and electrophysiological signatures of each individual. This will result in the applied goal of deriving new neuro-computational assays that can detect deviant network interactions causally related to cognitive functions, which is key for then renormalizing those functions in neuropsychological conditions such as ADHD. Thus, if successful, my proposed work will ultimately result in novel, low-cost, and painless non-invasive neural interventions for a wide range of neuropsychological disorders tied to abnormal neural oscillations.
Max ERC Funding
1 497 104 €
Duration
Start date: 2018-02-01, End date: 2023-01-31
Project acronym EPIFISH
Project INNOVATIVE EPIGENETIC MARKERS FOR FISH DOMESTICATION
Researcher (PI) Jorge Manuel De Oliveira Fernandes
Host Institution (HI) NORD UNIVERSITET
Call Details Consolidator Grant (CoG), LS9, ERC-2015-CoG
Summary Aquaculture is the fastest growing food production sector in the world, since there is an increasing demand for fish protein to feed a growing global population, which cannot be met by fisheries. In order to ensure the sustainability of this sector it is critical to domesticate and selectively improve the major commercial fish species. To date, the genetic markers used in selective breeding of fish account only for a fraction of the observed phenotypic variation. EPIFISH is a scientifically innovative and timely project that will address fish domestication and selection from a new perspective using a multidisciplinary approach. The rapid pace of substantial phenotypic changes during adaptation to new environmental conditions in fish undergoing domestication raises the original hypothesis that epigenetic mechanisms are involved in this process. Thus, the overarching aim of EPIFISH is to ascertain the importance of epigenetics in fish domestication using the Nile tilapia (Oreochromis niloticus) as model species. Specific objectives are i) to determine how selection affects the miRNA transcriptome and the epigenetic landscape during domestication, ii) to perform a functional characterization of miRNA variants and epigenetic alleles associated with growth, and iii) to validate them as potential epigenetic markers for future selective breeding programmes. The identification of epigenetic markers will be a ground-breaking element of EPIFISH with major impact on aquaculture biotechnology, since they will enable the development and application of epigenomic selection as a new feature in future selective breeding programmes. Moreover, the project outcomes will provide novel mechanistic insights into the role of epigenetics in fish domestication, which will surely open new horizons for future frontier research in epigenetics, namely transgenerational inheritance and nutritional epigenetics.
Summary
Aquaculture is the fastest growing food production sector in the world, since there is an increasing demand for fish protein to feed a growing global population, which cannot be met by fisheries. In order to ensure the sustainability of this sector it is critical to domesticate and selectively improve the major commercial fish species. To date, the genetic markers used in selective breeding of fish account only for a fraction of the observed phenotypic variation. EPIFISH is a scientifically innovative and timely project that will address fish domestication and selection from a new perspective using a multidisciplinary approach. The rapid pace of substantial phenotypic changes during adaptation to new environmental conditions in fish undergoing domestication raises the original hypothesis that epigenetic mechanisms are involved in this process. Thus, the overarching aim of EPIFISH is to ascertain the importance of epigenetics in fish domestication using the Nile tilapia (Oreochromis niloticus) as model species. Specific objectives are i) to determine how selection affects the miRNA transcriptome and the epigenetic landscape during domestication, ii) to perform a functional characterization of miRNA variants and epigenetic alleles associated with growth, and iii) to validate them as potential epigenetic markers for future selective breeding programmes. The identification of epigenetic markers will be a ground-breaking element of EPIFISH with major impact on aquaculture biotechnology, since they will enable the development and application of epigenomic selection as a new feature in future selective breeding programmes. Moreover, the project outcomes will provide novel mechanistic insights into the role of epigenetics in fish domestication, which will surely open new horizons for future frontier research in epigenetics, namely transgenerational inheritance and nutritional epigenetics.
Max ERC Funding
1 996 189 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym EQUIARITH
Project Equidistribution in number theory
Researcher (PI) Philippe Michel
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE1, ERC-2008-AdG
Summary The purpose of this proposal is to investigate from various perspectives some equidistribution problems associated with homogeneous spaces of arithmetic type: a typical problem (basically solved) is the distribution of the set of representations of a large integer by an integral quadratic form. Another harder problem is the study of the distribution of special points on Shimura varieties. In a different direction (linked with quantum chaos), the study of the concentration of Laplacian (Maass) eigenforms or of sections of holomorphic bundles is related to similar problems. Given X such a space and G>L the underlying algebraic group and its corresponding lattice L, the above questions boil down to studying the distribution of H-orbits x.H (or more generally H-invariant measures)on the quotient L\G for some subgroups H. This question may be studied different methods: Harmonic Analysis (HA): given a function f on L\G one studies the period integral of f along x.H. This may be done by automorphic methods. In favorable circumstances, the above periods are related to L-functions which one may hope to treat by methods from analytic number theory (the subconvexity problem). Ergodic Theory (ET): one studies the properties of weak*-limits of the measures supported by x.H using rigidity techniques: depending on the nature of H, one might use either rigidity of unipotent actions or the more recent rigidity results for torus actions in rank >1. In fact, HA and ET are intertwined and complementary : the use of ET in this context require a substantial input from number theory and HA, while ET lead to a soft understanding of several features of HA. In addition, the Langlands correspondence principle make it possible to pass from one group G to another. Based on earlier experience, our goal is to develop these interactions systematically and to develop new approaches to outstanding arithmetic problems :eg. the subconvexity problem or the Andre/Oort conjecture.
Summary
The purpose of this proposal is to investigate from various perspectives some equidistribution problems associated with homogeneous spaces of arithmetic type: a typical problem (basically solved) is the distribution of the set of representations of a large integer by an integral quadratic form. Another harder problem is the study of the distribution of special points on Shimura varieties. In a different direction (linked with quantum chaos), the study of the concentration of Laplacian (Maass) eigenforms or of sections of holomorphic bundles is related to similar problems. Given X such a space and G>L the underlying algebraic group and its corresponding lattice L, the above questions boil down to studying the distribution of H-orbits x.H (or more generally H-invariant measures)on the quotient L\G for some subgroups H. This question may be studied different methods: Harmonic Analysis (HA): given a function f on L\G one studies the period integral of f along x.H. This may be done by automorphic methods. In favorable circumstances, the above periods are related to L-functions which one may hope to treat by methods from analytic number theory (the subconvexity problem). Ergodic Theory (ET): one studies the properties of weak*-limits of the measures supported by x.H using rigidity techniques: depending on the nature of H, one might use either rigidity of unipotent actions or the more recent rigidity results for torus actions in rank >1. In fact, HA and ET are intertwined and complementary : the use of ET in this context require a substantial input from number theory and HA, while ET lead to a soft understanding of several features of HA. In addition, the Langlands correspondence principle make it possible to pass from one group G to another. Based on earlier experience, our goal is to develop these interactions systematically and to develop new approaches to outstanding arithmetic problems :eg. the subconvexity problem or the Andre/Oort conjecture.
Max ERC Funding
866 000 €
Duration
Start date: 2008-12-01, End date: 2013-11-30
Project acronym ETOPEX
Project Engineering Topological Phases and Excitations in Nanostructures with Interactions
Researcher (PI) Jelena KLINOVAJA
Host Institution (HI) UNIVERSITAT BASEL
Call Details Starting Grant (StG), PE3, ERC-2017-STG
Summary The main goal of this theory project is to propose engineered topological phases emerging only in strongly interacting systems and to identify the most feasible systems for experimental implementation. First, we will focus on setups hosting topological states localized at domain walls in one-dimensional channels such as parafermions, which are a new class of non-Abelian anyons and most promising candidates for topological quantum computing schemes. Second, in the framework of weakly coupled wires and planes, we will develop schemes for novel fractional topological phases in two- and three-dimensional interacting systems. To achieve these two goals, my team will identify necessary ingredients such as strong electron-electron interactions, helical magnetic order, or crossed Andreev proximity-induced superconductivity and address each of them separately. Later, we combine them to lead us to the desired topological phases and states. On our way to the main goal, as test cases, we will also study non-interacting analogies of the proposed effects such as Majorana fermions and integer topological insulators and pay close attention to the rapid experimental progress to come up with the most feasible proposals. We will study transport properties, scanning tunneling and atomic force microscopy. Especially for systems driven out of equilibrium, we will develop a Floquet-Luttinger liquid technique. We will explore the stability of engineered topological phases, error rates of topological qubits based on them, and computation schemes allowing for a set of universal qubit gates. We will strive to find a reasonable balance between topological stability and experimental
feasibility of setups. Our main theoretical tools are Luttinger liquid techniques (bosonization and renormalization group), Green functions, Floquet formalism, and numerical simulations in non-interacting test models.
Summary
The main goal of this theory project is to propose engineered topological phases emerging only in strongly interacting systems and to identify the most feasible systems for experimental implementation. First, we will focus on setups hosting topological states localized at domain walls in one-dimensional channels such as parafermions, which are a new class of non-Abelian anyons and most promising candidates for topological quantum computing schemes. Second, in the framework of weakly coupled wires and planes, we will develop schemes for novel fractional topological phases in two- and three-dimensional interacting systems. To achieve these two goals, my team will identify necessary ingredients such as strong electron-electron interactions, helical magnetic order, or crossed Andreev proximity-induced superconductivity and address each of them separately. Later, we combine them to lead us to the desired topological phases and states. On our way to the main goal, as test cases, we will also study non-interacting analogies of the proposed effects such as Majorana fermions and integer topological insulators and pay close attention to the rapid experimental progress to come up with the most feasible proposals. We will study transport properties, scanning tunneling and atomic force microscopy. Especially for systems driven out of equilibrium, we will develop a Floquet-Luttinger liquid technique. We will explore the stability of engineered topological phases, error rates of topological qubits based on them, and computation schemes allowing for a set of universal qubit gates. We will strive to find a reasonable balance between topological stability and experimental
feasibility of setups. Our main theoretical tools are Luttinger liquid techniques (bosonization and renormalization group), Green functions, Floquet formalism, and numerical simulations in non-interacting test models.
Max ERC Funding
1 158 403 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym EVOLOR
Project Cognitive Ageing in Dogs
Researcher (PI) Eniko Kubinyi
Host Institution (HI) EOTVOS LORAND TUDOMANYEGYETEM
Call Details Starting Grant (StG), LS9, ERC-2015-STG
Summary The aim of this project is to understand the causal factors contributing to the cognitive decline during senescence and to develop sensitive and standardized behaviour tests for early detection in order to increase the welfare of affected species. With the rapidly ageing population of Europe, related research is a priority in the European Union.
We will focus both on characterising the ageing phenotype and the underlying biological processes in dogs as a well-established natural animal model. We develop a reliable and valid test battery applying innovative multidisciplinary methods (e.g. eye-tracking, motion path analysis, identification of behaviour using inertial sensors, EEG, fMRI, candidate gene, and epigenetics) in both longitudinal and cross-sectional studies. We expect to reveal specific environmental risk factors which hasten ageing and also protective factors which may postpone it. We aim to provide objective criteria (behavioural, physiological and genetic biomarkers) to assess and predict the ageing trajectory for specific individual dogs. This would help veterinarians to recognise the symptoms early, and initiate necessary counter actions.
This approach establishes the framework for answering the broad question that how we can extend the healthy life of ageing dogs which indirectly also contributes to the welfare of the owner and decreases veterinary expenses. The detailed description of the ageing phenotype may also facilitate the use of dogs as a natural model for human senescence, including the development and application of pharmaceutical interventions.
We expect that our approach offers the scientific foundation to delay the onset of cognitive ageing in dog populations by 1-2 years, and also increase the proportion of dogs that enjoy healthy ageing.
Summary
The aim of this project is to understand the causal factors contributing to the cognitive decline during senescence and to develop sensitive and standardized behaviour tests for early detection in order to increase the welfare of affected species. With the rapidly ageing population of Europe, related research is a priority in the European Union.
We will focus both on characterising the ageing phenotype and the underlying biological processes in dogs as a well-established natural animal model. We develop a reliable and valid test battery applying innovative multidisciplinary methods (e.g. eye-tracking, motion path analysis, identification of behaviour using inertial sensors, EEG, fMRI, candidate gene, and epigenetics) in both longitudinal and cross-sectional studies. We expect to reveal specific environmental risk factors which hasten ageing and also protective factors which may postpone it. We aim to provide objective criteria (behavioural, physiological and genetic biomarkers) to assess and predict the ageing trajectory for specific individual dogs. This would help veterinarians to recognise the symptoms early, and initiate necessary counter actions.
This approach establishes the framework for answering the broad question that how we can extend the healthy life of ageing dogs which indirectly also contributes to the welfare of the owner and decreases veterinary expenses. The detailed description of the ageing phenotype may also facilitate the use of dogs as a natural model for human senescence, including the development and application of pharmaceutical interventions.
We expect that our approach offers the scientific foundation to delay the onset of cognitive ageing in dog populations by 1-2 years, and also increase the proportion of dogs that enjoy healthy ageing.
Max ERC Funding
1 202 500 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym EXOKLEIN
Project The Climates and Habitability of Small Exoplanets Around Red Stars
Researcher (PI) Kevin HENG
Host Institution (HI) UNIVERSITAET BERN
Call Details Consolidator Grant (CoG), PE9, ERC-2017-COG
Summary The detection of life beyond our Solar System is possible only via the remote sensing of the atmospheres of exoplanets. The recent discovery that small exoplanets are common around cool, red stars offers an exciting opportunity to study the atmospheres of Earth-like worlds. Motivated by this revelation, the EXOKLEIN project proposes to construct a holistic climate framework to understand astronomical observations in the context of the atmosphere, geochemistry and biosignatures of the exoplanet. The proposed research is divided into three major themes. Research Theme 1 aims to construct a virtual laboratory of an atmosphere that considers atmospheric dynamics, chemistry and radiation, as well as how they interact. This virtual laboratory enables us to understand the physical and chemical mechanisms involved, as well as predict the observed properties of an exoplanet. Research Theme 2 aims to generalize the carbonate-silicate cycle (also known as the long-term carbon cycle) by considering variations in rock composition, water acidity and atmospheric conditions. The carbonate-silicate cycle is important because it regulates the long-term presence of carbon dioxide (a vital greenhouse gas) in atmospheres. We also aim to investigate the role of the cycle in determining the fates of ocean-dominated exoplanets called “water worlds”. Research Theme 3 aims to investigate the long-term stability of biosignature gases in the context of the climate. Whether a gas uniquely indicates the presence of biology on an exoplanet depends on the atmospheric properties and ultraviolet radiation environment. We investigate three prime candidates for biosignature gases: methyl chloride, dimethylsulfide and ammonia. Overall, the EXOKLEIN project will significantly advance our understanding of whether the environments of rocky exoplanets around red stars are stable and conducive for life, and whether the tell-tale signatures of life may be detected by astronomers.
Summary
The detection of life beyond our Solar System is possible only via the remote sensing of the atmospheres of exoplanets. The recent discovery that small exoplanets are common around cool, red stars offers an exciting opportunity to study the atmospheres of Earth-like worlds. Motivated by this revelation, the EXOKLEIN project proposes to construct a holistic climate framework to understand astronomical observations in the context of the atmosphere, geochemistry and biosignatures of the exoplanet. The proposed research is divided into three major themes. Research Theme 1 aims to construct a virtual laboratory of an atmosphere that considers atmospheric dynamics, chemistry and radiation, as well as how they interact. This virtual laboratory enables us to understand the physical and chemical mechanisms involved, as well as predict the observed properties of an exoplanet. Research Theme 2 aims to generalize the carbonate-silicate cycle (also known as the long-term carbon cycle) by considering variations in rock composition, water acidity and atmospheric conditions. The carbonate-silicate cycle is important because it regulates the long-term presence of carbon dioxide (a vital greenhouse gas) in atmospheres. We also aim to investigate the role of the cycle in determining the fates of ocean-dominated exoplanets called “water worlds”. Research Theme 3 aims to investigate the long-term stability of biosignature gases in the context of the climate. Whether a gas uniquely indicates the presence of biology on an exoplanet depends on the atmospheric properties and ultraviolet radiation environment. We investigate three prime candidates for biosignature gases: methyl chloride, dimethylsulfide and ammonia. Overall, the EXOKLEIN project will significantly advance our understanding of whether the environments of rocky exoplanets around red stars are stable and conducive for life, and whether the tell-tale signatures of life may be detected by astronomers.
Max ERC Funding
1 984 729 €
Duration
Start date: 2018-02-01, End date: 2023-01-31
Project acronym FAIR
Project Fairness and the Moral Mind
Researcher (PI) Bertil TUNGODDEN
Host Institution (HI) NORGES HANDELSHOYSKOLE
Call Details Advanced Grant (AdG), SH1, ERC-2017-ADG
Summary The project provides a comprehensive and groundbreaking approach to the analysis of the moral mind and inequality acceptance. The first part of the project will provide a novel study of how the moral ideals of personal responsibility and individual freedom, which are fundamental values in most liberal societies, shape inequality acceptance. It will also provide the first experimental study of how people draw the moral circle, which is at the heart of the most pressing policy challenges facing the world today and strongly related to the question of global fairness. The second part will study how social institutions shape inequality acceptance and how it develops in childhood and adolescence, by providing two unique international studies of inequality acceptance in 60 countries across the world. These studies will provide novel insights on the distributive behavior of nationally representative samples of adults and children and on the cultural transmission of moral preferences in society. The project is rooted in behavioral and experimental economics, but will also draw on insights from other social sciences and philosophy. It will develop novel experimental paradigms to study the moral mind and the nature of inequality acceptance, including incentivized experiments on nationally representative populations, and combine structural and non-parametric empirical analysis with theory development. Taken together, the project represents a unique study of inequality acceptance in the social sciences that will address an important knowledge gap in the literature on inequality.
Summary
The project provides a comprehensive and groundbreaking approach to the analysis of the moral mind and inequality acceptance. The first part of the project will provide a novel study of how the moral ideals of personal responsibility and individual freedom, which are fundamental values in most liberal societies, shape inequality acceptance. It will also provide the first experimental study of how people draw the moral circle, which is at the heart of the most pressing policy challenges facing the world today and strongly related to the question of global fairness. The second part will study how social institutions shape inequality acceptance and how it develops in childhood and adolescence, by providing two unique international studies of inequality acceptance in 60 countries across the world. These studies will provide novel insights on the distributive behavior of nationally representative samples of adults and children and on the cultural transmission of moral preferences in society. The project is rooted in behavioral and experimental economics, but will also draw on insights from other social sciences and philosophy. It will develop novel experimental paradigms to study the moral mind and the nature of inequality acceptance, including incentivized experiments on nationally representative populations, and combine structural and non-parametric empirical analysis with theory development. Taken together, the project represents a unique study of inequality acceptance in the social sciences that will address an important knowledge gap in the literature on inequality.
Max ERC Funding
2 500 000 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym FANOEC
Project Fundamentals and Applications of Inorganic Oxygen Evolution Catalysts
Researcher (PI) Xile Hu
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Consolidator Grant (CoG), PE5, ERC-2015-CoG
Summary The oxygen evolution reaction (OER) is the key reaction to enable the storage of solar energy in the form of hydrogen fuel through water splitting. Efficient, Earth-abundant, and robust OER catalysts are required for a large-scale and cost-effective production of solar hydrogen. While OER catalysts based on metal oxides exhibit promising activity and stability, their rational design and developments are challenging due to the heterogeneous nature of the catalysts. Here I propose a project to (i) understand OER on metal oxides at the molecular level and engineer catalytic sites at the atomic scale; (ii) develop and apply practical OER catalysts for high-efficiency water splitting in electrochemical and photoelectrochemical devices. The first general objective will be obtained by using 2-dimensional metal oxide nanosheets as a platform to probe the intrinsic activity and active sites of metal oxide OER catalysts, as well as by developing sub-nanocluster and single-atom metal oxide OER catalysis. The second general objective will be obtained by establishing new and better synthetic methods, developing new classes of catalysts, and applying catalysts in innovative water splitting devices.
The project employs methodologies from many different disciplines in chemistry and materials science. Synthesis is the starting point and the backbone of the project, and the synthetic efforts are complemented and valorised by state-of-the-art characterization and catalytic tests. The project will not only yield significant fundamental insights and knowledge in heterogeneous OER catalysis, but also produce functional and economically viable catalysts for solar fuel production.
Summary
The oxygen evolution reaction (OER) is the key reaction to enable the storage of solar energy in the form of hydrogen fuel through water splitting. Efficient, Earth-abundant, and robust OER catalysts are required for a large-scale and cost-effective production of solar hydrogen. While OER catalysts based on metal oxides exhibit promising activity and stability, their rational design and developments are challenging due to the heterogeneous nature of the catalysts. Here I propose a project to (i) understand OER on metal oxides at the molecular level and engineer catalytic sites at the atomic scale; (ii) develop and apply practical OER catalysts for high-efficiency water splitting in electrochemical and photoelectrochemical devices. The first general objective will be obtained by using 2-dimensional metal oxide nanosheets as a platform to probe the intrinsic activity and active sites of metal oxide OER catalysts, as well as by developing sub-nanocluster and single-atom metal oxide OER catalysis. The second general objective will be obtained by establishing new and better synthetic methods, developing new classes of catalysts, and applying catalysts in innovative water splitting devices.
The project employs methodologies from many different disciplines in chemistry and materials science. Synthesis is the starting point and the backbone of the project, and the synthetic efforts are complemented and valorised by state-of-the-art characterization and catalytic tests. The project will not only yield significant fundamental insights and knowledge in heterogeneous OER catalysis, but also produce functional and economically viable catalysts for solar fuel production.
Max ERC Funding
2 199 983 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym FeelAgain
Project Restoring natural feelings from missing or damaged peripheral nervous system by model-driven neuroprosthesis
Researcher (PI) Stanisa RASPOPOVIC
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), PE7, ERC-2017-STG
Summary Due to sensory loss diabetic patients are prone to falls and to foot ulcers, which consequently increase the risk of amputations. Because of the lack of sensory feedback amputees experience falls, perceive the prosthesis as a foreign body and therefore do not rely on it during walking. This causes counterbalancing movements that increase fatigue. Both types of patients suffer neuropathic pain, associable to aberrant sensory inputs. Neural pathways between the periphery and the brain are still functional above the damage or the amputation. Targeting these structures with peripheral neural interfaces could allow the restoration of natural sensory functionalities. The aim of project is to develop the first neuroprosthesis restoring natural foot sensations, through sciatic nerve stimulation, to patients with diabetic neuropathy or leg amputation. To that aim we will develop a detailed computational model of the sensory loop of the sciatic nerve. It will merge the electrical stimulation effects on sensory fibers and transduction of mechanical deformations of the skin into action potentials. Modelling results will be validated. Applying this modeling framework we will optimize the geometry of a peripheral neural interface, its surgical placement and define stimulation protocols that mimic natural sensory feedback responses. Effective device for feedback restoration will be constructed, able to translate the signals recorded by sensorized sole placed under the prosthetic or diabetic foot into the natural foot sensations perceived by subject. The interventional tools for embodiment boosting and pain relief will be developed. Clinical tests on amputee and diabetic subjects will assess the efficacy of the FeelAgain conceptual and technological framework by examination of pain, embodiment, ulcer prevention, falls avoidance and walking ability.
Summary
Due to sensory loss diabetic patients are prone to falls and to foot ulcers, which consequently increase the risk of amputations. Because of the lack of sensory feedback amputees experience falls, perceive the prosthesis as a foreign body and therefore do not rely on it during walking. This causes counterbalancing movements that increase fatigue. Both types of patients suffer neuropathic pain, associable to aberrant sensory inputs. Neural pathways between the periphery and the brain are still functional above the damage or the amputation. Targeting these structures with peripheral neural interfaces could allow the restoration of natural sensory functionalities. The aim of project is to develop the first neuroprosthesis restoring natural foot sensations, through sciatic nerve stimulation, to patients with diabetic neuropathy or leg amputation. To that aim we will develop a detailed computational model of the sensory loop of the sciatic nerve. It will merge the electrical stimulation effects on sensory fibers and transduction of mechanical deformations of the skin into action potentials. Modelling results will be validated. Applying this modeling framework we will optimize the geometry of a peripheral neural interface, its surgical placement and define stimulation protocols that mimic natural sensory feedback responses. Effective device for feedback restoration will be constructed, able to translate the signals recorded by sensorized sole placed under the prosthetic or diabetic foot into the natural foot sensations perceived by subject. The interventional tools for embodiment boosting and pain relief will be developed. Clinical tests on amputee and diabetic subjects will assess the efficacy of the FeelAgain conceptual and technological framework by examination of pain, embodiment, ulcer prevention, falls avoidance and walking ability.
Max ERC Funding
1 499 637 €
Duration
Start date: 2018-04-01, End date: 2023-03-31
Project acronym FEVER
Project Forecasting the recurrence rate of volcanic eruptions
Researcher (PI) Luca Caricchi
Host Institution (HI) UNIVERSITE DE GENEVE
Call Details Starting Grant (StG), PE10, ERC-2015-STG
Summary Volcanic eruptions occur with a frequency that is inversely proportional to their magnitude. Datasets of natural volcanic events, currently used to determine the recurrence rate of volcanic eruptions are intrinsically biased. Combining physical modelling of processes with detailed statistical analysis has been demonstrated essential for assessing reliably the recurrence rate of natural hazards, such as floods and earthquakes. This would be the first attempt to apply a similar, integrated approach to explosive volcanic eruptions.
The high-gain final target of FEVER is to produce a physically based statistical model able to ForEcast the recurrence rate of Volcanic Eruptions both at regional and global scale. This is the first project of this kind and consequently involves a significant risk. Because 500 million people live in proximity of volcanoes and eruptions have a significant social and economical impact, forecasting the recurrence rate of volcanic eruption remains a great challenge in Science.
This project builds on two main directions of my research: a) Thermo-mechanical and statistical modelling targeting the identification of the main physical factors controlling the recurrence rate of volcanic eruptions. We showed that the flux of magma from depth directly controls the magnitude of the largest possible eruptions. Thus, b) we developed a novel method to determine such magma fluxes. These two lines of research combine perfectly in FEVER and will be integrated to answer questions such as: What is the probability of an eruption similar to the Tambora 1815 to occur in the next 100 years on Earth or in Europe? What is the largest physically possible eruption that can occur in Europe?
The high-gain target of FEVER is to mitigate the impact of volcanic eruptions on our society, by producing research of interest for governmental agencies dealing with location of strategic infrastructures, and for businesses such as aviation.
Summary
Volcanic eruptions occur with a frequency that is inversely proportional to their magnitude. Datasets of natural volcanic events, currently used to determine the recurrence rate of volcanic eruptions are intrinsically biased. Combining physical modelling of processes with detailed statistical analysis has been demonstrated essential for assessing reliably the recurrence rate of natural hazards, such as floods and earthquakes. This would be the first attempt to apply a similar, integrated approach to explosive volcanic eruptions.
The high-gain final target of FEVER is to produce a physically based statistical model able to ForEcast the recurrence rate of Volcanic Eruptions both at regional and global scale. This is the first project of this kind and consequently involves a significant risk. Because 500 million people live in proximity of volcanoes and eruptions have a significant social and economical impact, forecasting the recurrence rate of volcanic eruption remains a great challenge in Science.
This project builds on two main directions of my research: a) Thermo-mechanical and statistical modelling targeting the identification of the main physical factors controlling the recurrence rate of volcanic eruptions. We showed that the flux of magma from depth directly controls the magnitude of the largest possible eruptions. Thus, b) we developed a novel method to determine such magma fluxes. These two lines of research combine perfectly in FEVER and will be integrated to answer questions such as: What is the probability of an eruption similar to the Tambora 1815 to occur in the next 100 years on Earth or in Europe? What is the largest physically possible eruption that can occur in Europe?
The high-gain target of FEVER is to mitigate the impact of volcanic eruptions on our society, by producing research of interest for governmental agencies dealing with location of strategic infrastructures, and for businesses such as aviation.
Max ERC Funding
1 458 192 €
Duration
Start date: 2016-04-01, End date: 2021-03-31
Project acronym FIRM
Project Mathematical Methods for Financial Risk Management
Researcher (PI) Halil Mete Soner
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE1, ERC-2008-AdG
Summary Since the pioneering works of Black & Scholes, Merton and Markowitch, sophisticated quantitative methods are being used to introduce more complex financial products each year. However, this exciting increase in the complexity forces the industry to engage in proper risk management practices. The recent financial crisis emanating from risky loan practices is a prime example of this acute need. This proposal focuses exactly on this general problem. We will develop mathematical techniques to measure and assess the financial risk of new instruments. In the theoretical direction, we will expand the scope of recent studies on risk measures of Artzner et-al., and the stochastic representation formulae proved by the principal investigator and his collaborators. The core research team consists of mathematicians and the finance faculty. The newly created state-of-the-art finance laboratory at the host institution will have direct access to financial data. Moreover, executive education that is performed in this unit enables the research group to have close contacts with high level executives of the financial industry. The theoretical side of the project focuses on nonlinear partial differential equations (PDE), backward stochastic differential equations (BSDE) and dynamic risk measures. Already a deep connection between BSDEs and dynamic risk measures is developed by Peng, Delbaen and collaborators. Also, the principal investigator and his collaborators developed connections to PDEs. In this project, we further investigate these connections. Chief goals of this project are theoretical results and computational techniques in the general areas of BSDEs, fully nonlinear PDEs, and the development of risk management practices that are acceptable by the industry. The composition of the research team and our expertise in quantitative methods, well position us to effectively formulate and study theoretical problems with financial impact.
Summary
Since the pioneering works of Black & Scholes, Merton and Markowitch, sophisticated quantitative methods are being used to introduce more complex financial products each year. However, this exciting increase in the complexity forces the industry to engage in proper risk management practices. The recent financial crisis emanating from risky loan practices is a prime example of this acute need. This proposal focuses exactly on this general problem. We will develop mathematical techniques to measure and assess the financial risk of new instruments. In the theoretical direction, we will expand the scope of recent studies on risk measures of Artzner et-al., and the stochastic representation formulae proved by the principal investigator and his collaborators. The core research team consists of mathematicians and the finance faculty. The newly created state-of-the-art finance laboratory at the host institution will have direct access to financial data. Moreover, executive education that is performed in this unit enables the research group to have close contacts with high level executives of the financial industry. The theoretical side of the project focuses on nonlinear partial differential equations (PDE), backward stochastic differential equations (BSDE) and dynamic risk measures. Already a deep connection between BSDEs and dynamic risk measures is developed by Peng, Delbaen and collaborators. Also, the principal investigator and his collaborators developed connections to PDEs. In this project, we further investigate these connections. Chief goals of this project are theoretical results and computational techniques in the general areas of BSDEs, fully nonlinear PDEs, and the development of risk management practices that are acceptable by the industry. The composition of the research team and our expertise in quantitative methods, well position us to effectively formulate and study theoretical problems with financial impact.
Max ERC Funding
880 560 €
Duration
Start date: 2008-12-01, End date: 2013-11-30
Project acronym FLIRT
Project Fluid Flows and Irregular Transport
Researcher (PI) Gianluca Crippa
Host Institution (HI) UNIVERSITAT BASEL
Call Details Starting Grant (StG), PE1, ERC-2015-STG
Summary "Several important partial differential equations (PDEs) arising in the mathematical description of physical phenomena exhibit transport features: physical quantities are advected by velocity fields that drive the dynamics of the system. This is the case for instance for the Euler equation of fluid dynamics, for conservation laws, and for kinetic equations.
An ubiquitous feature of these phenomena is their intrinsic lack of regularity. From the mathematical point of view this stems from the nonlinearity and/or nonlocality of the PDEs. Moreover, the lack of regularity also encodes actual properties of the underlying physical systems: conservation laws develop shocks (discontinuities that propagate in time), solutions to the Euler equation exhibit rough and ""disordered"" behaviors. This irregularity is the major difficulty in the mathematical analysis of such problems, since it prevents the use of many standard methods, foremost the classical (and powerful) theory of characteristics.
For these reasons, the study in a non smooth setting of transport and continuity equations, and of flows of ordinary differential equations, is a fundamental tool to approach challenging important questions concerning these PDEs.
This project aims at establishing:
(1) deep insight into the structure of solutions of nonlinear PDEs, in particular the Euler equation and multidimensional systems of conservation laws,
(2) rigorous bounds for mixing phenomena in fluid flows, phenomena for which giving a precise mathematical formulation is extremely challenging.
The unifying factor of this proposal is that the analysis will rely on major advances in the theory of flows of ordinary differential equations in a non smooth setting, thus providing a robust formulation via characteristics for the PDEs under consideration. The guiding thread is the crucial role of geometric measure theory techniques, which are extremely efficient to describe and investigate irregular phenomena."
Summary
"Several important partial differential equations (PDEs) arising in the mathematical description of physical phenomena exhibit transport features: physical quantities are advected by velocity fields that drive the dynamics of the system. This is the case for instance for the Euler equation of fluid dynamics, for conservation laws, and for kinetic equations.
An ubiquitous feature of these phenomena is their intrinsic lack of regularity. From the mathematical point of view this stems from the nonlinearity and/or nonlocality of the PDEs. Moreover, the lack of regularity also encodes actual properties of the underlying physical systems: conservation laws develop shocks (discontinuities that propagate in time), solutions to the Euler equation exhibit rough and ""disordered"" behaviors. This irregularity is the major difficulty in the mathematical analysis of such problems, since it prevents the use of many standard methods, foremost the classical (and powerful) theory of characteristics.
For these reasons, the study in a non smooth setting of transport and continuity equations, and of flows of ordinary differential equations, is a fundamental tool to approach challenging important questions concerning these PDEs.
This project aims at establishing:
(1) deep insight into the structure of solutions of nonlinear PDEs, in particular the Euler equation and multidimensional systems of conservation laws,
(2) rigorous bounds for mixing phenomena in fluid flows, phenomena for which giving a precise mathematical formulation is extremely challenging.
The unifying factor of this proposal is that the analysis will rely on major advances in the theory of flows of ordinary differential equations in a non smooth setting, thus providing a robust formulation via characteristics for the PDEs under consideration. The guiding thread is the crucial role of geometric measure theory techniques, which are extremely efficient to describe and investigate irregular phenomena."
Max ERC Funding
1 009 351 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym FLOWTONICS
Project Solid-state flow as a novel approach for the fabrication of photonic devices
Researcher (PI) Fabien Sorin
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Starting Grant (StG), PE5, ERC-2015-STG
Summary The development of advanced photon-based technologies offers exciting promises in fields of crucial importance for the development of sustainable societies such as energy and food management, security and health care. Innovative photonic devices will however reveal their true potential if we can deploy their functionalities not only on rigid wafers, but also over large-area, flexible and stretchable substrates. Indeed, providing energy harvesting, sensing, or stimulating abilities over windows, screens, food packages, wearable textiles, or even biological tissues will be invaluable technological breakthroughs. Today, however, conventional fabrication approaches remain difficult to scale to large area, and are not well adapted to the mechanical and topological requirements of non-rigid and curved substrates. In FLOWTONICS, we propose innovative materials processing approaches and device architectures to enable the simple and scalable fabrication of nano-structured photonic systems compatible with flexible and stretchable substrates. Our strategy is to direct the flow of optical materials through an innovative and thus far unexplored exploitation of the solid-state dewetting and thermal drawing processes. Our objectives are three-fold: (1) Study and demonstrate, for the first time, the strong potential of the dewetting of chalcogenide glasses layers for the fabrication of large area photonic devices; (2) Show that dewetting can also be exploited to realize photonic architectures onto engineered, nano-imprinted flexible and stretchable polymer substrates; (3) Demonstrate, for the first time, the use of the thermal drawing process as a novel tool to realize advanced flexible and stretchable photonic ribbons and fibers. These novel approaches can contribute to game-changing scientific and technological advances for the sustainable management of our resources and to meet our growing health care needs, putting Europe at the forefront of innovation in these crucial areas.
Summary
The development of advanced photon-based technologies offers exciting promises in fields of crucial importance for the development of sustainable societies such as energy and food management, security and health care. Innovative photonic devices will however reveal their true potential if we can deploy their functionalities not only on rigid wafers, but also over large-area, flexible and stretchable substrates. Indeed, providing energy harvesting, sensing, or stimulating abilities over windows, screens, food packages, wearable textiles, or even biological tissues will be invaluable technological breakthroughs. Today, however, conventional fabrication approaches remain difficult to scale to large area, and are not well adapted to the mechanical and topological requirements of non-rigid and curved substrates. In FLOWTONICS, we propose innovative materials processing approaches and device architectures to enable the simple and scalable fabrication of nano-structured photonic systems compatible with flexible and stretchable substrates. Our strategy is to direct the flow of optical materials through an innovative and thus far unexplored exploitation of the solid-state dewetting and thermal drawing processes. Our objectives are three-fold: (1) Study and demonstrate, for the first time, the strong potential of the dewetting of chalcogenide glasses layers for the fabrication of large area photonic devices; (2) Show that dewetting can also be exploited to realize photonic architectures onto engineered, nano-imprinted flexible and stretchable polymer substrates; (3) Demonstrate, for the first time, the use of the thermal drawing process as a novel tool to realize advanced flexible and stretchable photonic ribbons and fibers. These novel approaches can contribute to game-changing scientific and technological advances for the sustainable management of our resources and to meet our growing health care needs, putting Europe at the forefront of innovation in these crucial areas.
Max ERC Funding
1 499 585 €
Duration
Start date: 2016-02-01, End date: 2021-01-31
Project acronym FMWK 1870-2008
Project The surfaces of cement and reinforced concrete. A history of the formworks and processing of the surface, 1870-2008
Researcher (PI) Roberto Gargiani
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), SH5, ERC-2008-AdG
Summary Since the nineteenth century, the reinforced concrete has been generating a vast specialized litterature everywhere in the world. However, none of it has ever tried to make a first assessment of the evolution of one of the most fundamental element in the processing of the reinforced concrete: the formwork; nor have been reconstructed the various ways of processing the surfaces after removal of the formwork in order to get special effects of polished or rustic surface. Therefore, on the subject of manufacturing of the formworks and processing of the surface, there is a true gap in the studies on reinforced concrete that the research The surfaces of cement and reinforced concrete. A history of the formworks and processing of the surface, 1870-2008 intends to fill. Whether historical or operationnal, this gap lacks not only of the context of the evolution from the nineteenth century, but also of a comprehensive outline of the recent production. The purpose of the research is to provide the most comprehensive documentation and the most significant examples of the international architectural production on the subject of formworks and concrete surfaces within the time span considered. Drawing up the outline of the various types of building and processing of the surfaces will be extraordinarily useful for the historiography of architecture, which will hence have a scientific instrument to evaluate the works in terms of connections between form and material in relation to concrete, as well as for the modern formworks in which the technicial and artistical issues of reinforced concrete processing at sight still remain fundamental. The results of the research will be collected in a book with the caracteristics of an essay, consisting of an important written part and an extremely rich iconographic documentation (project drawings, photographs of building sites and tools, etc.); it will be structured as a synthesis between the technical manual and the historical critical essay.
Summary
Since the nineteenth century, the reinforced concrete has been generating a vast specialized litterature everywhere in the world. However, none of it has ever tried to make a first assessment of the evolution of one of the most fundamental element in the processing of the reinforced concrete: the formwork; nor have been reconstructed the various ways of processing the surfaces after removal of the formwork in order to get special effects of polished or rustic surface. Therefore, on the subject of manufacturing of the formworks and processing of the surface, there is a true gap in the studies on reinforced concrete that the research The surfaces of cement and reinforced concrete. A history of the formworks and processing of the surface, 1870-2008 intends to fill. Whether historical or operationnal, this gap lacks not only of the context of the evolution from the nineteenth century, but also of a comprehensive outline of the recent production. The purpose of the research is to provide the most comprehensive documentation and the most significant examples of the international architectural production on the subject of formworks and concrete surfaces within the time span considered. Drawing up the outline of the various types of building and processing of the surfaces will be extraordinarily useful for the historiography of architecture, which will hence have a scientific instrument to evaluate the works in terms of connections between form and material in relation to concrete, as well as for the modern formworks in which the technicial and artistical issues of reinforced concrete processing at sight still remain fundamental. The results of the research will be collected in a book with the caracteristics of an essay, consisting of an important written part and an extremely rich iconographic documentation (project drawings, photographs of building sites and tools, etc.); it will be structured as a synthesis between the technical manual and the historical critical essay.
Max ERC Funding
660 000 €
Duration
Start date: 2009-03-01, End date: 2015-02-28
Project acronym FunctionalProteomics
Project Proteomic fingerprinting of functionally characterized single synapses
Researcher (PI) Zoltan NUSSER
Host Institution (HI) INSTITUTE OF EXPERIMENTAL MEDICINE - HUNGARIAN ACADEMY OF SCIENCES
Call Details Advanced Grant (AdG), LS5, ERC-2017-ADG
Summary Our astonishing cognitive abilities are the consequence of complex connectivity within our neuronal networks and the large functional diversity of excitable nerve cells and their synapses. Investigations over the past half a century revealed dramatic diversity in shape, size and functional properties among synapses established by distinct cell types in different brain regions and demonstrated that the functional differences are partly due to different molecular mechanisms. However, synaptic diversity is also observed among synapses established by molecularly and morphologically uniform presynaptic cells on molecularly and morphologically uniform postsynaptic cells. Our hypothesis is that quantitative molecular differences underlie the functional diversity of such synapses. We will focus on hippocampal CA1 pyramidal cell (PC) to mGluR1α+ O-LM cell synapses, which show remarkable functional and molecular heterogeneity. In vitro multiple cell patch-clamp recordings followed by quantal analysis will be performed to quantify well-defined biophysical properties of these synapses. The molecular composition of the functionally characterized single synapses will be determined following the development of a novel postembedding immunolocalization method. Correlations between the molecular content and functional properties will be established and genetic up- and downregulation of individual synaptic proteins will be conducted to reveal causal relationships. Finally, correlations of the activity history and the functional properties of the synapses will be established by performing in vivo two-photon Ca2+ imaging in head-fixed behaving animals followed by in vitro functional characterization of their synapses. Our results will reveal quantitative molecular fingerprints of functional properties, allowing us to render dynamic behaviour to billions of synapses when the connectome of the hippocampal circuit is created using array tomography.
Summary
Our astonishing cognitive abilities are the consequence of complex connectivity within our neuronal networks and the large functional diversity of excitable nerve cells and their synapses. Investigations over the past half a century revealed dramatic diversity in shape, size and functional properties among synapses established by distinct cell types in different brain regions and demonstrated that the functional differences are partly due to different molecular mechanisms. However, synaptic diversity is also observed among synapses established by molecularly and morphologically uniform presynaptic cells on molecularly and morphologically uniform postsynaptic cells. Our hypothesis is that quantitative molecular differences underlie the functional diversity of such synapses. We will focus on hippocampal CA1 pyramidal cell (PC) to mGluR1α+ O-LM cell synapses, which show remarkable functional and molecular heterogeneity. In vitro multiple cell patch-clamp recordings followed by quantal analysis will be performed to quantify well-defined biophysical properties of these synapses. The molecular composition of the functionally characterized single synapses will be determined following the development of a novel postembedding immunolocalization method. Correlations between the molecular content and functional properties will be established and genetic up- and downregulation of individual synaptic proteins will be conducted to reveal causal relationships. Finally, correlations of the activity history and the functional properties of the synapses will be established by performing in vivo two-photon Ca2+ imaging in head-fixed behaving animals followed by in vitro functional characterization of their synapses. Our results will reveal quantitative molecular fingerprints of functional properties, allowing us to render dynamic behaviour to billions of synapses when the connectome of the hippocampal circuit is created using array tomography.
Max ERC Funding
2 498 750 €
Duration
Start date: 2018-10-01, End date: 2023-09-30
Project acronym G-EDIT
Project Mechanisms of RNA-guided genome editing in eukaryotes
Researcher (PI) Mariusz Nowacki
Host Institution (HI) UNIVERSITAET BERN
Call Details Consolidator Grant (CoG), LS1, ERC-2015-CoG
Summary The goal of this project is to contribute to our understanding of RNA-mediated epigenetic mechanisms of genome regulation in eukaryotes. Ciliated protozoa offer a fantastic opportunity to investigate the complex process of trans-generational programming of chromosomal rearrangements, which is thought to serve as a form of immune defense against invasive DNA. Developmental processes in ciliates include extensive rearrangements of the germline DNA, including elimination of transposons and the precise excision of numerous single-copy elements derived from transposons. This process is considered to be maternally controlled because the maternal genome provides essential information in the form of RNA that determines the offspring's genome content and organization. This programmed DNA subtraction, the so-called ‘RNA scanning’ process, is mediated by trans-generational comparison between the germline and the maternal somatic genome. One of the most intriguing questions is how a complex population of small RNAs representing the entire germline genome can be compared to the entire rearranged maternal genome, resulting in the efficient selection of germline-specific RNAs, which are able to target DNA deletions in the developing genome. All this occurs in a very short time and involves a massively coordinated transport of all the components between three types of nuclei. This project focuses on characterizing the molecular machinery that can orchestrate the massive genome rearrangements in ciliates through nucleic acids and protein interactions. It also addresses the question how RNA targets DNA cleavage at the right place. In addition, this project aims to investigate the role of RNA in guiding chromosomal rearrangements in other eukaryotic systems, particularly in human cancer cells where genome editing often occurs on a large scale. This work may be the first step in providing novel insights into the process of programmed DNA rearrangements in higher eukaryotes.
Summary
The goal of this project is to contribute to our understanding of RNA-mediated epigenetic mechanisms of genome regulation in eukaryotes. Ciliated protozoa offer a fantastic opportunity to investigate the complex process of trans-generational programming of chromosomal rearrangements, which is thought to serve as a form of immune defense against invasive DNA. Developmental processes in ciliates include extensive rearrangements of the germline DNA, including elimination of transposons and the precise excision of numerous single-copy elements derived from transposons. This process is considered to be maternally controlled because the maternal genome provides essential information in the form of RNA that determines the offspring's genome content and organization. This programmed DNA subtraction, the so-called ‘RNA scanning’ process, is mediated by trans-generational comparison between the germline and the maternal somatic genome. One of the most intriguing questions is how a complex population of small RNAs representing the entire germline genome can be compared to the entire rearranged maternal genome, resulting in the efficient selection of germline-specific RNAs, which are able to target DNA deletions in the developing genome. All this occurs in a very short time and involves a massively coordinated transport of all the components between three types of nuclei. This project focuses on characterizing the molecular machinery that can orchestrate the massive genome rearrangements in ciliates through nucleic acids and protein interactions. It also addresses the question how RNA targets DNA cleavage at the right place. In addition, this project aims to investigate the role of RNA in guiding chromosomal rearrangements in other eukaryotic systems, particularly in human cancer cells where genome editing often occurs on a large scale. This work may be the first step in providing novel insights into the process of programmed DNA rearrangements in higher eukaryotes.
Max ERC Funding
1 953 000 €
Duration
Start date: 2016-05-01, End date: 2021-04-30
Project acronym GANGS
Project Gangs, Gangsters, and Ganglands: Towards a Global Comparative Ethnography
Researcher (PI) Dennis RODGERS
Host Institution (HI) FONDATION POUR L INSTITUT DE HAUTES ETUDES INTERNATIONALES ET DU DEVELOPPEMENT
Call Details Advanced Grant (AdG), SH3, ERC-2017-ADG
Summary Gangs occupy a key position in the global imaginary of violence, widely perceived and represented as primary sources of brutality and insecurity. This can be related to the fact that they are one of a small number of truly global phenomena, found in almost every society across both time and space. At the same time, however, as almost 100 years of gang research have highlighted, the phenomenon can vary significantly in form, dynamics, and consequences. While there have been many insightful studies of gangs, the overwhelming majority have focused on a single group or location, and we still lack a proper sense of what kinds of gang dynamics might be general, and which ones are specific to particular times and places. The GANGS project will develop a systematic comparative investigation of global gang dynamics, to better understand why they emerge, how they evolve over time, whether they are associated with particular urban configurations, how and why individuals join gangs, and what impact this has on their potential futures. It will draw on original ethnographic research carried out in multiple locations, adopting an explicitly tripartite focus on “Gangs”, “Gangsters”, and “Ganglands” in order to better explore the interplay between group, individual, and contextual factors. The first will consider the organisational dynamics of gangs, the second will focus on individual gang members and their trajectories before, during, and after their involvement in a gang, while the third will reflect on the contexts within which gangs emerge and evolve. Research will combine innovative collaborative ethnography in Nicaragua, South Africa, and France, a ground-breaking comparison of 35 individual gang member life histories from across Africa, Asia, Europe, North and South America, and unique joint ethnographic investigations into the political economy of three gang-affected cities in Nicaragua, France, and South Africa.
Summary
Gangs occupy a key position in the global imaginary of violence, widely perceived and represented as primary sources of brutality and insecurity. This can be related to the fact that they are one of a small number of truly global phenomena, found in almost every society across both time and space. At the same time, however, as almost 100 years of gang research have highlighted, the phenomenon can vary significantly in form, dynamics, and consequences. While there have been many insightful studies of gangs, the overwhelming majority have focused on a single group or location, and we still lack a proper sense of what kinds of gang dynamics might be general, and which ones are specific to particular times and places. The GANGS project will develop a systematic comparative investigation of global gang dynamics, to better understand why they emerge, how they evolve over time, whether they are associated with particular urban configurations, how and why individuals join gangs, and what impact this has on their potential futures. It will draw on original ethnographic research carried out in multiple locations, adopting an explicitly tripartite focus on “Gangs”, “Gangsters”, and “Ganglands” in order to better explore the interplay between group, individual, and contextual factors. The first will consider the organisational dynamics of gangs, the second will focus on individual gang members and their trajectories before, during, and after their involvement in a gang, while the third will reflect on the contexts within which gangs emerge and evolve. Research will combine innovative collaborative ethnography in Nicaragua, South Africa, and France, a ground-breaking comparison of 35 individual gang member life histories from across Africa, Asia, Europe, North and South America, and unique joint ethnographic investigations into the political economy of three gang-affected cities in Nicaragua, France, and South Africa.
Max ERC Funding
2 498 079 €
Duration
Start date: 2019-01-01, End date: 2023-12-31
Project acronym GigaFemto
Project Towards matchbox-size GHz femtosecond lasers for frequency combs generation: ‘a femtosecond laser fabricating a femtosecond laser’
Researcher (PI) Yves BELLOUARD
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Proof of Concept (PoC), ERC-2017-PoC
Summary Femtosecond laser GHz cavity lasers has enabled a new type of optical frequency comb that have defined a new standard and a universal method for precisely measuring optical frequencies measuring. This quantum leap in metrology unravelled numerous technological innovations, from more precise atomic clocks to unprecedented data-transmission flowrate in telecoms. So far, optical frequency-comb systems remain table-top size and expensive, an impediment for further adoptions of this major technological break-through.
Here, we propose a novel concept of monolithic, miniaturized – matchbox size - femtosecond laser GHz cavity, in which all the optical functions are integrated in a same substrate, including active functions requiring active tuning or electro-optics effects. This concept relies on femtosecond laser machining combined with post-processing methods to fabricate this optical cavity and to perform the fine alignment required for proper laser operation. It defines a new paradigm where ‘a femtosecond laser is used to fabricate and tune another femtosecond laser’.
Specifically, GigaFemto aim at 1/ demonstrating the first all-in-glass femtosecond GHz cavity, of matchbox size, fabricated and tuned by another femtosecond lasers and 2/ laying the seeds for a commercial exploitation by a spin-off company of our laboratory. The later will include a market analysis and a thorough precompetitive study.
Summary
Femtosecond laser GHz cavity lasers has enabled a new type of optical frequency comb that have defined a new standard and a universal method for precisely measuring optical frequencies measuring. This quantum leap in metrology unravelled numerous technological innovations, from more precise atomic clocks to unprecedented data-transmission flowrate in telecoms. So far, optical frequency-comb systems remain table-top size and expensive, an impediment for further adoptions of this major technological break-through.
Here, we propose a novel concept of monolithic, miniaturized – matchbox size - femtosecond laser GHz cavity, in which all the optical functions are integrated in a same substrate, including active functions requiring active tuning or electro-optics effects. This concept relies on femtosecond laser machining combined with post-processing methods to fabricate this optical cavity and to perform the fine alignment required for proper laser operation. It defines a new paradigm where ‘a femtosecond laser is used to fabricate and tune another femtosecond laser’.
Specifically, GigaFemto aim at 1/ demonstrating the first all-in-glass femtosecond GHz cavity, of matchbox size, fabricated and tuned by another femtosecond lasers and 2/ laying the seeds for a commercial exploitation by a spin-off company of our laboratory. The later will include a market analysis and a thorough precompetitive study.
Max ERC Funding
150 000 €
Duration
Start date: 2018-03-01, End date: 2019-08-31
Project acronym Global Horizons
Project Global Horizons in Pre-Modern Art
Researcher (PI) Beate FRICKE
Host Institution (HI) UNIVERSITAET BERN
Call Details Consolidator Grant (CoG), SH5, ERC-2017-COG
Summary The horizon is the line that seems to separate earth from sky, the line that divides all visible categories into two categories: those that intersect the earth’s surface and those that do not. The horizon is key to the experience of space; it defines our perspective on the visible world. The GLOBAL HORIZONS project will investigate the historical meanings and functions of the horizon in visual and intellectual cultures of the pre-Modern world on a global scale. Examining how pre-Modern cultures conceived of the horizon opens a crucial line of inquiry into understanding the many different ways in which humans have conceived of the relationship between an invisible cosmos and the visible world.
Non-western art history is rarely taught at European institutions although countless important works of Non-Western art are kept in museum collections all across Europe. Including non-western concepts of pictorial space is key to the project, however, for Eurocentric models of art history have generally privileged the rise of the linear perspective. This framing has limited our understanding of the horizon’s complex rhetorical, visual and epistemological roles.
The project’s specific question connects a variety of objects and epistemological categories, such as panel painting, manuscript illumination, profane und religious objects, cartography, travel accounts, and cosmological treaties. The applied methodological approaches will range from art history, visual studies and cultural anthropology. They will also draw upon interdisciplinary expertise, such as technologies of art production, history of science and philosophy. The project thus makes an important contribution to global art history, a highly innovative area in which only very few pre-modern topics have been addressed. It is the ultimate goal of GLOBAL HORIZONS is to suggest a new history of representation in Western medieval art.
Summary
The horizon is the line that seems to separate earth from sky, the line that divides all visible categories into two categories: those that intersect the earth’s surface and those that do not. The horizon is key to the experience of space; it defines our perspective on the visible world. The GLOBAL HORIZONS project will investigate the historical meanings and functions of the horizon in visual and intellectual cultures of the pre-Modern world on a global scale. Examining how pre-Modern cultures conceived of the horizon opens a crucial line of inquiry into understanding the many different ways in which humans have conceived of the relationship between an invisible cosmos and the visible world.
Non-western art history is rarely taught at European institutions although countless important works of Non-Western art are kept in museum collections all across Europe. Including non-western concepts of pictorial space is key to the project, however, for Eurocentric models of art history have generally privileged the rise of the linear perspective. This framing has limited our understanding of the horizon’s complex rhetorical, visual and epistemological roles.
The project’s specific question connects a variety of objects and epistemological categories, such as panel painting, manuscript illumination, profane und religious objects, cartography, travel accounts, and cosmological treaties. The applied methodological approaches will range from art history, visual studies and cultural anthropology. They will also draw upon interdisciplinary expertise, such as technologies of art production, history of science and philosophy. The project thus makes an important contribution to global art history, a highly innovative area in which only very few pre-modern topics have been addressed. It is the ultimate goal of GLOBAL HORIZONS is to suggest a new history of representation in Western medieval art.
Max ERC Funding
1 904 188 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym GlobalBioIm
Project Global integrative framework for Computational Bio-Imaging
Researcher (PI) Michael Unser
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE7, ERC-2015-AdG
Summary A powerful strategy for increasing the quality and resolution of medical and biological images is to acquire larger quantities of data (Fourier samples for MRI, projections for X-ray imaging) and to jointly reconstruct the complete signal by correctly reallocating the measurements in 3D space/time and integrating all the information available. The underlying image sequence is reconstructed globally as the result of a very large-scale optimization that exploits the redundancy of the signal (spatio-temporal correlation, sparsity) to improve the solution. Due to recent advances in the field, we are arguing that such a “bigger data” integration is now within reach and that our team is ideally qualified to lead the way. A successful outcome will profoundly impact the design of future bioimaging systems.
We are proposing a unifying framework for the development of such next-generation reconstruction algorithms with a clear separation between the physical (forward model) and signal-related (regularization, incorporation of prior constraints) aspects of the problem. The pillars of our formulation are: an operator algebra with a corresponding set of fast linear solvers; an advanced statistical framework for the principled derivation of reconstruction methods; and learning schemes for parameter optimization and self-tuning. These core technologies will be incorporated into a modular software library featuring the key components for the implementation and testing of iterative reconstruction algorithms. We shall apply our framework to improve upon the state of the art in the following modalities: 1) phase-contrast X-ray tomography in full 3D; 2) structured illumination microscopy; 3) single-particle analysis in cryo-electron tomography; 4) a novel multipose fluorescence microscopy; 5) real-time MRI, and 6) a new multimodal digital microscope. In all instances, we shall work in close collaboration with the imaging scientists who are in charge of the instrumentation.
Summary
A powerful strategy for increasing the quality and resolution of medical and biological images is to acquire larger quantities of data (Fourier samples for MRI, projections for X-ray imaging) and to jointly reconstruct the complete signal by correctly reallocating the measurements in 3D space/time and integrating all the information available. The underlying image sequence is reconstructed globally as the result of a very large-scale optimization that exploits the redundancy of the signal (spatio-temporal correlation, sparsity) to improve the solution. Due to recent advances in the field, we are arguing that such a “bigger data” integration is now within reach and that our team is ideally qualified to lead the way. A successful outcome will profoundly impact the design of future bioimaging systems.
We are proposing a unifying framework for the development of such next-generation reconstruction algorithms with a clear separation between the physical (forward model) and signal-related (regularization, incorporation of prior constraints) aspects of the problem. The pillars of our formulation are: an operator algebra with a corresponding set of fast linear solvers; an advanced statistical framework for the principled derivation of reconstruction methods; and learning schemes for parameter optimization and self-tuning. These core technologies will be incorporated into a modular software library featuring the key components for the implementation and testing of iterative reconstruction algorithms. We shall apply our framework to improve upon the state of the art in the following modalities: 1) phase-contrast X-ray tomography in full 3D; 2) structured illumination microscopy; 3) single-particle analysis in cryo-electron tomography; 4) a novel multipose fluorescence microscopy; 5) real-time MRI, and 6) a new multimodal digital microscope. In all instances, we shall work in close collaboration with the imaging scientists who are in charge of the instrumentation.
Max ERC Funding
2 499 515 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym GLOBESCAPE
Project Enabling transformation: Linking design and land system science to foster place-making in peri-urban landscapes under increasing globalization
Researcher (PI) Adrienne GRÊT-REGAMEY
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), SH2, ERC-2017-STG
Summary Unprecedented urbanization is threatening landscape diversity, bringing along new social and environmental problems. Standardized business centers, single family residential areas and shopping malls displace highly productive agricultural land, while the culture and lifestyles of local communities become absorbed into the sphere of globalization. This dramatic uniformisation is nurtured by the ever increasing global human migration. People are losing their sense of place and their motivation to initiate change. Uniformed international landscapes start dominating peri-urban areas. The result is a tremendous increase in fragility of these new landscapes of the twenty-first century, calling for an active and creative landscape shaping process to secure the long-term provision of critical ecosystem services. Up until now, however, models and tools developed in land system science have not caught up with the needs to understand and ultimately foster humans’ capacities to shape their landscapes.
This project will contribute to a next generation of tools and methods to foster the development of resilient landscapes. I suggest linking design and probabilistic modeling in a collaborative landscape development tool to enable the transformation of spaces into places. This unconventional approach is necessary to deal with the probabilistic nature of landscapes. Landscapes can only be defined by including the observer – a concept severally neglected in today’s research efforts. Anchored in four peri-urban case studies, the interdisciplinary experimental and modeling work will have impact far beyond predicting transformation pathways of peri-urban landscapes under increased globalization. The resulting methods and tool will redefine the status quo of current geodesign tools, promote novel ways of deliberative decision-making and governance, and ultimately support humans to intentionally transform peri-urban landscapes.
Summary
Unprecedented urbanization is threatening landscape diversity, bringing along new social and environmental problems. Standardized business centers, single family residential areas and shopping malls displace highly productive agricultural land, while the culture and lifestyles of local communities become absorbed into the sphere of globalization. This dramatic uniformisation is nurtured by the ever increasing global human migration. People are losing their sense of place and their motivation to initiate change. Uniformed international landscapes start dominating peri-urban areas. The result is a tremendous increase in fragility of these new landscapes of the twenty-first century, calling for an active and creative landscape shaping process to secure the long-term provision of critical ecosystem services. Up until now, however, models and tools developed in land system science have not caught up with the needs to understand and ultimately foster humans’ capacities to shape their landscapes.
This project will contribute to a next generation of tools and methods to foster the development of resilient landscapes. I suggest linking design and probabilistic modeling in a collaborative landscape development tool to enable the transformation of spaces into places. This unconventional approach is necessary to deal with the probabilistic nature of landscapes. Landscapes can only be defined by including the observer – a concept severally neglected in today’s research efforts. Anchored in four peri-urban case studies, the interdisciplinary experimental and modeling work will have impact far beyond predicting transformation pathways of peri-urban landscapes under increased globalization. The resulting methods and tool will redefine the status quo of current geodesign tools, promote novel ways of deliberative decision-making and governance, and ultimately support humans to intentionally transform peri-urban landscapes.
Max ERC Funding
1 498 106 €
Duration
Start date: 2018-06-01, End date: 2023-05-31
Project acronym GLYCANAL
Project High-Throughput Cryogenic Spectroscopy for Glycan Analysis
Researcher (PI) Thomas RIZZO
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), PE4, ERC-2017-ADG
Summary Glycans, or oligosaccharides, are ubiquitous in biological systems. Because they decorate the surface of cells, they play a key role in virtually all cellular recognition processes and are implicated in almost every major disease. Despite their importance, the characterization of glycan primary structure lags far behind that of proteins and DNA because of their intrinsic isomeric complexity. The isomeric nature of the monosaccharide building blocks, the stereochemistry of the glycosidic bond, the possibility of multiple attachment points, and the occurrence of isomeric branched structures all make glycans difficult to analyze.
Although mass spectrometry (MS) is one of the most sensitive approaches for glycan analysis, it has difficulty to distinguish all these various types of isomerisms. Ion mobility spectrometry (IMS) combined with MS has demonstrated some ability to identify glycan anomers and regioisomers, but cannot easily distinguish isomeric disaccharides, for example.
We have recently demonstrated that cryogenic infrared spectroscopy provides unique vibrational fingerprints of glycans that distinguishes all the various types of isomerism. When combined with simultaneous measurements of mass and ion mobility, these fingerprints can be tabulated in a database and used to identify a given glycan from a mixture. However, adding a spectroscopic dimension to ion mobility and mass measurements requires additional time, which hampers it use as an analytical tool. To use spectroscopic data for real-world glycan analysis, one must multiplex the measurement process and record the vibrational spectrum of many species simultaneously.
This project involves designing and constructing an instrument that combines state-of-the-art ion mobility separation, cryogenic ion spectroscopy, and time-of-flight mass spectrometry to perform high throughput analysis of glycan primary structure. The success of this project would represent a tremendous breakthrough for glycoscience.
Summary
Glycans, or oligosaccharides, are ubiquitous in biological systems. Because they decorate the surface of cells, they play a key role in virtually all cellular recognition processes and are implicated in almost every major disease. Despite their importance, the characterization of glycan primary structure lags far behind that of proteins and DNA because of their intrinsic isomeric complexity. The isomeric nature of the monosaccharide building blocks, the stereochemistry of the glycosidic bond, the possibility of multiple attachment points, and the occurrence of isomeric branched structures all make glycans difficult to analyze.
Although mass spectrometry (MS) is one of the most sensitive approaches for glycan analysis, it has difficulty to distinguish all these various types of isomerisms. Ion mobility spectrometry (IMS) combined with MS has demonstrated some ability to identify glycan anomers and regioisomers, but cannot easily distinguish isomeric disaccharides, for example.
We have recently demonstrated that cryogenic infrared spectroscopy provides unique vibrational fingerprints of glycans that distinguishes all the various types of isomerism. When combined with simultaneous measurements of mass and ion mobility, these fingerprints can be tabulated in a database and used to identify a given glycan from a mixture. However, adding a spectroscopic dimension to ion mobility and mass measurements requires additional time, which hampers it use as an analytical tool. To use spectroscopic data for real-world glycan analysis, one must multiplex the measurement process and record the vibrational spectrum of many species simultaneously.
This project involves designing and constructing an instrument that combines state-of-the-art ion mobility separation, cryogenic ion spectroscopy, and time-of-flight mass spectrometry to perform high throughput analysis of glycan primary structure. The success of this project would represent a tremendous breakthrough for glycoscience.
Max ERC Funding
2 499 801 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym GRAPHCPX
Project A graph complex valued field theory
Researcher (PI) Thomas Hans Willwacher
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Starting Grant (StG), PE1, ERC-2015-STG
Summary The goal of the proposed project is to create a universal (AKSZ type) topological field theory with values in graph complexes, capturing the rational homotopy types of manifolds, configuration and embedding spaces.
If successful, such a theory will unite certain areas of mathematical physics, topology, homological algebra and algebraic geometry. More concretely, from the physical viewpoint it would give a precise topological interpretation of a class of well studied topological field theories, as opposed to the current state of the art, in which these theories are defined by giving formulae without guarantees on the non-triviality of the produced invariants.
From the topological viewpoint such a theory will provide new tools to study much sought after objects like configuration and embedding spaces, and tentatively also diffeomorphism groups, through small combinatorial models given by Feynman diagrams. In particular, this will unite and extend existing graphical models of configuration and embedding spaces due to Kontsevich, Lambrechts, Volic, Arone, Turchin and others.
From the homological algebra viewpoint a field theory as above provides a wealth of additional algebraic structures on the graph complexes, which are some of the most central and most mysterious objects in the field.
Such algebraic structures are expected to yield constraints on the graph cohomology, as well as ways to construct series of previously unknown classes.
Summary
The goal of the proposed project is to create a universal (AKSZ type) topological field theory with values in graph complexes, capturing the rational homotopy types of manifolds, configuration and embedding spaces.
If successful, such a theory will unite certain areas of mathematical physics, topology, homological algebra and algebraic geometry. More concretely, from the physical viewpoint it would give a precise topological interpretation of a class of well studied topological field theories, as opposed to the current state of the art, in which these theories are defined by giving formulae without guarantees on the non-triviality of the produced invariants.
From the topological viewpoint such a theory will provide new tools to study much sought after objects like configuration and embedding spaces, and tentatively also diffeomorphism groups, through small combinatorial models given by Feynman diagrams. In particular, this will unite and extend existing graphical models of configuration and embedding spaces due to Kontsevich, Lambrechts, Volic, Arone, Turchin and others.
From the homological algebra viewpoint a field theory as above provides a wealth of additional algebraic structures on the graph complexes, which are some of the most central and most mysterious objects in the field.
Such algebraic structures are expected to yield constraints on the graph cohomology, as well as ways to construct series of previously unknown classes.
Max ERC Funding
1 162 500 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym GraphInt
Project Principles of Graph Data Integration
Researcher (PI) Philippe Cudre-mauroux
Host Institution (HI) UNIVERSITE DE FRIBOURG
Call Details Consolidator Grant (CoG), PE6, ERC-2015-CoG
Summary The present proposal tackles fundamental problems in data management, leveraging expressive, large-scale and heterogeneous graph structures in order to integrate both unstructured (e.g., text) and structured (e.g., relational) content. Integrating heterogeneous content has become a key hurdle in the deployment of Big Data applications, due to the meteoric rise of both machine and user-generated data storing information in a variety of formats. Traditional integration techniques cleaning up, fusing and then mapping heterogeneous data onto rigid abstractions fall short of accurately capturing the complexity and wild heterogeneity of today’s information. Having closely followed the emergence of heterogeneous information sources online, I am convinced that only an interdisciplinary approach drawing both from classical data management and from large-scale Web information processing techniques can solve the formidable data integration challenges that they pose. The following project proposes an ambitious overhaul of information integration techniques embracing the scale and heterogeneity of today’s data. I propose the use of expressive and heterogeneous graphs of entities to continuously and dynamically interrelate disparate pieces of content while capturing their idiosyncrasies. The following project focuses on three core issues related to large-scale and heterogeneous information graphs: i) the effective extraction of fined-grained information from unstructured sources and their proper integration into large-scale heterogeneous and probabilistic graphs, ii) the creation of novel physical storage structures and primitives to durably and efficiently manage the profusion of data considered by such graphs using clusters of commodity machines, and iii) the development of logical data abstraction mechanisms facilitating the effective and efficient resolution of complex analytic and data integration queries on top of the physical layer.
Summary
The present proposal tackles fundamental problems in data management, leveraging expressive, large-scale and heterogeneous graph structures in order to integrate both unstructured (e.g., text) and structured (e.g., relational) content. Integrating heterogeneous content has become a key hurdle in the deployment of Big Data applications, due to the meteoric rise of both machine and user-generated data storing information in a variety of formats. Traditional integration techniques cleaning up, fusing and then mapping heterogeneous data onto rigid abstractions fall short of accurately capturing the complexity and wild heterogeneity of today’s information. Having closely followed the emergence of heterogeneous information sources online, I am convinced that only an interdisciplinary approach drawing both from classical data management and from large-scale Web information processing techniques can solve the formidable data integration challenges that they pose. The following project proposes an ambitious overhaul of information integration techniques embracing the scale and heterogeneity of today’s data. I propose the use of expressive and heterogeneous graphs of entities to continuously and dynamically interrelate disparate pieces of content while capturing their idiosyncrasies. The following project focuses on three core issues related to large-scale and heterogeneous information graphs: i) the effective extraction of fined-grained information from unstructured sources and their proper integration into large-scale heterogeneous and probabilistic graphs, ii) the creation of novel physical storage structures and primitives to durably and efficiently manage the profusion of data considered by such graphs using clusters of commodity machines, and iii) the development of logical data abstraction mechanisms facilitating the effective and efficient resolution of complex analytic and data integration queries on top of the physical layer.
Max ERC Funding
1 998 339 €
Duration
Start date: 2016-08-01, End date: 2021-07-31
Project acronym GREinGC
Project General Relativistic Effect in Galaxy Clustering as a Novel Probe of Inflationary Cosmology
Researcher (PI) Jaiyul Yoo
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Consolidator Grant (CoG), PE9, ERC-2015-CoG
Summary Substantial advances in cosmology over the past decades have firmly established the standard model of cosmology. However, the physical nature of the early Universe and dark energy (or inflationary cosmology) remains poorly understood. To resolve these issues, a large number of galaxy surveys are planned to measure millions of galaxies in the sky, promising precision measurements of galaxy clustering with enormous statistical power. Despite these advances in observation, the standard theoretical description of galaxy clustering is based on the Newtonian description, inadequate for measuring the relativistic effects from the early Universe and the deviations of modified gravity from general relativity. In recent years, the applicant, for the first time, developed the linear-order general relativistic description of galaxy clustering and showed that the relativistic effect in galaxy clustering is already measurable at a few-sigma level in current surveys like the Sloan survey
and significant detections (>10 sigma) are possible in upcoming surveys.
This research proposal will aim to use the subtle relativistic effect in galaxy clustering to develop novel probes of inflationary cosmology. In particular, the applicant will 1) formulate the higher-order relativistic description of galaxy clustering, an essential tool for computing the bispectrum, and 2) investigate the unique relativistic signatures (linear-order and higher-order) in galaxy clustering from the early Universe and dark energy to develop novel probes of isolating those signatures and to quantify their detectabilities in future galaxy surveys. Biases in cosmological parameter estimation, if the standard Newtonian description is used, will be quantified. A comprehensive understanding of inflationary cosmology will have far-reaching consequences, shedding light on new physics beyond the standard model.
Summary
Substantial advances in cosmology over the past decades have firmly established the standard model of cosmology. However, the physical nature of the early Universe and dark energy (or inflationary cosmology) remains poorly understood. To resolve these issues, a large number of galaxy surveys are planned to measure millions of galaxies in the sky, promising precision measurements of galaxy clustering with enormous statistical power. Despite these advances in observation, the standard theoretical description of galaxy clustering is based on the Newtonian description, inadequate for measuring the relativistic effects from the early Universe and the deviations of modified gravity from general relativity. In recent years, the applicant, for the first time, developed the linear-order general relativistic description of galaxy clustering and showed that the relativistic effect in galaxy clustering is already measurable at a few-sigma level in current surveys like the Sloan survey
and significant detections (>10 sigma) are possible in upcoming surveys.
This research proposal will aim to use the subtle relativistic effect in galaxy clustering to develop novel probes of inflationary cosmology. In particular, the applicant will 1) formulate the higher-order relativistic description of galaxy clustering, an essential tool for computing the bispectrum, and 2) investigate the unique relativistic signatures (linear-order and higher-order) in galaxy clustering from the early Universe and dark energy to develop novel probes of isolating those signatures and to quantify their detectabilities in future galaxy surveys. Biases in cosmological parameter estimation, if the standard Newtonian description is used, will be quantified. A comprehensive understanding of inflationary cosmology will have far-reaching consequences, shedding light on new physics beyond the standard model.
Max ERC Funding
1 991 721 €
Duration
Start date: 2016-03-01, End date: 2021-02-28
Project acronym GUTDROSO
Project Gut immunity and homeostasis in Drosophila
Researcher (PI) Bruno Lemaitre
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Advanced Grant (AdG), LS6, ERC-2008-AdG
Summary The gut is the major interface between microbes and their animal hosts and constitutes the main entry route for pathogens. As a consequence gut cells must be armed with efficient immune defenses to combat invasion and colonisation by pathogens. However, the gut also harbors a flora of commensal bacteria, with potentially beneficial effects for the host, which must be tolerated without a chronic, and harmful, immune response. In recent years Drosophila has emerged as a powerful model to dissect host-pathogen interactions, leading to the paradigm of antimicrobial peptide regulation by the Toll and Imd signaling pathways. The strength of this model derives from the availability of powerful and cost effective genetic and genomic tools as well as the high degree of similarities to vertebrate innate immunity. However, in spite of growing interest in gut mucosal immunity generally, very little is known about the immune response of the Drosophila gut. Using powerful new tools and those developed in the study of the systemic response, we propose to raise our understanding of Drosophila gut immunity to the same level as that of systemic immunity within the next five years. This project will involve integrated approaches to dissect not only the gut immune response but also gut homeostasis in the presence of commensal microbiota, as well as strategies used by entomopathogens to circumvent these defenses. We believe that the fundamental knowledge generated on Drosophila gut immunity will serve as a paradigm of epithelial immune reactivity and have a wider impact on our comprehension of animal defense mechanisms.
Summary
The gut is the major interface between microbes and their animal hosts and constitutes the main entry route for pathogens. As a consequence gut cells must be armed with efficient immune defenses to combat invasion and colonisation by pathogens. However, the gut also harbors a flora of commensal bacteria, with potentially beneficial effects for the host, which must be tolerated without a chronic, and harmful, immune response. In recent years Drosophila has emerged as a powerful model to dissect host-pathogen interactions, leading to the paradigm of antimicrobial peptide regulation by the Toll and Imd signaling pathways. The strength of this model derives from the availability of powerful and cost effective genetic and genomic tools as well as the high degree of similarities to vertebrate innate immunity. However, in spite of growing interest in gut mucosal immunity generally, very little is known about the immune response of the Drosophila gut. Using powerful new tools and those developed in the study of the systemic response, we propose to raise our understanding of Drosophila gut immunity to the same level as that of systemic immunity within the next five years. This project will involve integrated approaches to dissect not only the gut immune response but also gut homeostasis in the presence of commensal microbiota, as well as strategies used by entomopathogens to circumvent these defenses. We believe that the fundamental knowledge generated on Drosophila gut immunity will serve as a paradigm of epithelial immune reactivity and have a wider impact on our comprehension of animal defense mechanisms.
Max ERC Funding
1 485 627 €
Duration
Start date: 2009-04-01, End date: 2014-03-31
Project acronym HBMAP
Project Decoding, Mapping and Designing the Structural Complexity of Hydrogen-Bond Networks: from Water to Proteins to Polymers
Researcher (PI) Michele Ceriotti
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Starting Grant (StG), PE4, ERC-2015-STG
Summary Hydrogen bonds are ubiquitous and fundamental in nature, underpinning the behavior of systems as different as water, proteins and polymers. Much of this flexibility derives from their propensity to form complex topological networks, which can be strong enough to hold Kevlar together, or sufficiently labile to enable reversible structural transitions in allosteric proteins.
Simulations must treat the quantum nature of both electrons and protons to describe accurately the microscopic structure of H-bonded materials, but this wealth of data does not necessarily translate into deep physical understanding. Even the structure of a compound as essential as water is still the subject of intense debate, despite extensive investigations. Identifying recurring bonding patterns is essential to comprehend and manipulate the structural and dynamical properties of H-bonded systems.
Our objective is to develop and apply machine-learning techniques to atomistic simulations, and identify the design principles that govern the structure and properties of H-bonded compounds. Our strategy rests on three efforts: (1) recognition of recurring structural motifs with probabilistic data analysis; (2) coarse-grained mapping of the energetically accessible structural landscape by non-linear dimensionality reduction techniques; (3) acceleration of configuration sampling using these data-driven collective variables.
Identifying motifs and order parameters will be crucial to interpret simulations and experiments of growing complexity, and will enable computational design of H-bond networks. We will focus first on two objectives. (1) Rationalizing the structure of crystalline, amorphous and liquid water across its phase diagram, from ambient to astrophysical conditions, and its response to solutes, interfaces or confinement. (2) Enabling efficient simulation and structural design of polymers and proteins in non-biological contexts, targeting biomimetic materials and organic/inorganic interfaces.
Summary
Hydrogen bonds are ubiquitous and fundamental in nature, underpinning the behavior of systems as different as water, proteins and polymers. Much of this flexibility derives from their propensity to form complex topological networks, which can be strong enough to hold Kevlar together, or sufficiently labile to enable reversible structural transitions in allosteric proteins.
Simulations must treat the quantum nature of both electrons and protons to describe accurately the microscopic structure of H-bonded materials, but this wealth of data does not necessarily translate into deep physical understanding. Even the structure of a compound as essential as water is still the subject of intense debate, despite extensive investigations. Identifying recurring bonding patterns is essential to comprehend and manipulate the structural and dynamical properties of H-bonded systems.
Our objective is to develop and apply machine-learning techniques to atomistic simulations, and identify the design principles that govern the structure and properties of H-bonded compounds. Our strategy rests on three efforts: (1) recognition of recurring structural motifs with probabilistic data analysis; (2) coarse-grained mapping of the energetically accessible structural landscape by non-linear dimensionality reduction techniques; (3) acceleration of configuration sampling using these data-driven collective variables.
Identifying motifs and order parameters will be crucial to interpret simulations and experiments of growing complexity, and will enable computational design of H-bond networks. We will focus first on two objectives. (1) Rationalizing the structure of crystalline, amorphous and liquid water across its phase diagram, from ambient to astrophysical conditions, and its response to solutes, interfaces or confinement. (2) Enabling efficient simulation and structural design of polymers and proteins in non-biological contexts, targeting biomimetic materials and organic/inorganic interfaces.
Max ERC Funding
1 500 000 €
Duration
Start date: 2016-05-01, End date: 2021-04-30
Project acronym HETSPRESSO
Project A cartridge based flow chemistry machine for the automated synthesis of N-heterocycles for drug discovery
Researcher (PI) Jeffrey William BODE
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Proof of Concept (PoC), PC1, ERC-2015-PoC
Summary Saturated N-heterocycles are an important class of compounds and are attractive as scaffolds in the development of new pharmaceuticals. As part of ERC supported research, we identified a new class of chemical reagents – “SnAP Reagents” – that alleviate previous synthetic challenges. These SnAP reagents enable the synthesis of more drug-like saturated N-heterocycles, including some of the most sought after, but most difficult to prepare scaffolds. They have been successfully commercialized and are in high demand.
This high consumer demand, which is indicative of the interest in these products, is despite the disadvantages of this methodology: use of toxic materials, long reaction times, and relatively complicated reaction setups and workups. Furthermore, the sales of the reagents – while successful – have low margins and there are few opportunities for IP protection. We have therefore begun development of an innovative, cartridge-based, fully automated, stand-alone machine for conducting SnAP chemistry in a safe, rapid, and convenient manner. This approach provides a clear roadmap for a sustainable, successful Startup Entity by the development and sale of proprietary machines and disposable cartridges.
The ERC PoC funding will be used to assemble sufficient prototype machines and develop disposable cartridges for initial sales and marketing efforts. The successful assembly of a working prototype will provide the basis for the sale of first generation machines and a revenue stream for establishing a sustainable business. We have already identified interested parties who will purchase the first-generation instruments and provide valuable feedback for improving and optimizing their operation. In the longer-term, it is expected that sales of the disposable reagent cartridges and development of new machines that follow the same principles will emerge as the main activities of the start up company. We will also translate the technology and IP to other chemistries.
Summary
Saturated N-heterocycles are an important class of compounds and are attractive as scaffolds in the development of new pharmaceuticals. As part of ERC supported research, we identified a new class of chemical reagents – “SnAP Reagents” – that alleviate previous synthetic challenges. These SnAP reagents enable the synthesis of more drug-like saturated N-heterocycles, including some of the most sought after, but most difficult to prepare scaffolds. They have been successfully commercialized and are in high demand.
This high consumer demand, which is indicative of the interest in these products, is despite the disadvantages of this methodology: use of toxic materials, long reaction times, and relatively complicated reaction setups and workups. Furthermore, the sales of the reagents – while successful – have low margins and there are few opportunities for IP protection. We have therefore begun development of an innovative, cartridge-based, fully automated, stand-alone machine for conducting SnAP chemistry in a safe, rapid, and convenient manner. This approach provides a clear roadmap for a sustainable, successful Startup Entity by the development and sale of proprietary machines and disposable cartridges.
The ERC PoC funding will be used to assemble sufficient prototype machines and develop disposable cartridges for initial sales and marketing efforts. The successful assembly of a working prototype will provide the basis for the sale of first generation machines and a revenue stream for establishing a sustainable business. We have already identified interested parties who will purchase the first-generation instruments and provide valuable feedback for improving and optimizing their operation. In the longer-term, it is expected that sales of the disposable reagent cartridges and development of new machines that follow the same principles will emerge as the main activities of the start up company. We will also translate the technology and IP to other chemistries.
Max ERC Funding
149 040 €
Duration
Start date: 2016-11-01, End date: 2018-04-30
Project acronym HINBOTS
Project Highly Integrated Nanoscale Robots for Targeted Delivery to the Central Nervous System
Researcher (PI) Salvador Pané Vidal
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Consolidator Grant (CoG), PE8, ERC-2017-COG
Summary Over the past two decades researchers have been working to create synthetic small-scale machines ranging from molecular entities or miniaturized structures, to more complex assemblies of micro- and nanomaterials. These machines are able to navigate in complex environments by harvesting fuel from the surrounding media or from external power sources. One of the most sought-after applications for these miniaturized machines is to perform minimally invasive interventions, in which these devices will ultimately reduce risk, cost, and discomfort compared to conventional interventions. This has driven researchers to produce a myriad of small-scale robots loaded with therapeutic cargo. While recent research has demonstrated the potential of these devices in animal models, a number of challenges remain in moving small-scale robots into the operating theatre. Here, we propose highly integrated nanorobots capable of realizing several functions on-demand by capitalizing on recent developments in small-scale robotics, multiferroics, supramolecular chemistry, and gated materials. These nanorobots will integrate a porous inorganic active chassis made of a piezoelectric or a magnetoelectric multiferroic that will host therapeutic agents, with redox or electroresponsive supramolecular gates that will control the release of payloads. We will demonstrate for the first time that redox- and electroresponsive supramolecular machinery grafted onto the surface of piezoelectric or multiferroic platforms can be remotely controlled by means of a piezoelectrochemical potential triggered by acoustic and magnetic fields. The ultimate goal of this research consists of creating smart multifunctional nanorobots, which will act on affected sites of the central nervous system by delivering therapeutic agents and electrostimulating the rewiring of neural circuitry.
Summary
Over the past two decades researchers have been working to create synthetic small-scale machines ranging from molecular entities or miniaturized structures, to more complex assemblies of micro- and nanomaterials. These machines are able to navigate in complex environments by harvesting fuel from the surrounding media or from external power sources. One of the most sought-after applications for these miniaturized machines is to perform minimally invasive interventions, in which these devices will ultimately reduce risk, cost, and discomfort compared to conventional interventions. This has driven researchers to produce a myriad of small-scale robots loaded with therapeutic cargo. While recent research has demonstrated the potential of these devices in animal models, a number of challenges remain in moving small-scale robots into the operating theatre. Here, we propose highly integrated nanorobots capable of realizing several functions on-demand by capitalizing on recent developments in small-scale robotics, multiferroics, supramolecular chemistry, and gated materials. These nanorobots will integrate a porous inorganic active chassis made of a piezoelectric or a magnetoelectric multiferroic that will host therapeutic agents, with redox or electroresponsive supramolecular gates that will control the release of payloads. We will demonstrate for the first time that redox- and electroresponsive supramolecular machinery grafted onto the surface of piezoelectric or multiferroic platforms can be remotely controlled by means of a piezoelectrochemical potential triggered by acoustic and magnetic fields. The ultimate goal of this research consists of creating smart multifunctional nanorobots, which will act on affected sites of the central nervous system by delivering therapeutic agents and electrostimulating the rewiring of neural circuitry.
Max ERC Funding
1 998 720 €
Duration
Start date: 2018-09-01, End date: 2023-08-31
Project acronym HOLDING-HANDS
Project Holding hands: cell-cell junctions in breast cancer metastasis and resistance to therapy
Researcher (PI) Nicola Aceto
Host Institution (HI) UNIVERSITAT BASEL
Call Details Starting Grant (StG), LS4, ERC-2015-STG
Summary Breast cancer is the most common cancer in women, resulting in as many as 500000 deaths per year worldwide. Patients with breast cancer die unequivocally because of the development of incurable distant metastases and not because of symptoms related to the primary site. Understanding the complex, yet fundamental mechanisms driving breast cancer metastasis is critical to develop therapies tailored to this disease.
The current understanding of how metastasis occurs is derived primarily from mouse models and largely dominated by the notion that single migratory cancer cells within the primary tumor can actively disseminate to distant sites and develop as metastatic deposits. Unexpectedly, our very recent study on patient blood samples has shown that cancer cell groupings, held together through strong cell-cell junctions, can break off the primary tumor and form a metastatic lesion up to 50 times more efficiently than single migratory cancer cells (Aceto et al, Cell, 2014). These findings lead to new open questions, yet highlight a previously unappreciated and targetable mechanism of cancer dissemination.
Our preliminary data suggest that, among all types of cell-cell junctions, desmosomes and tight junctions are involved in this process, and therefore represent unprecedented options for developing a metastasis-tailored therapy for breast cancer.
The two predominant goals of this proposal are: first, to define the role of specific desmosome (DSG2) and tight junction (CLDN3 and TJP2) components in the development of metastasis. Second, to address their involvement in cellular signaling and response to therapy. These studies will not only use our first-of-a-kind in vivo models developed from patients with breast cancer metastases, but also cross the boundaries between basic science and clinical applications.
Our research has the long-term ambition to lead to a novel class of therapeutic agents tailored to block cell-cell junctions and prevent metastatic spread of cancer.
Summary
Breast cancer is the most common cancer in women, resulting in as many as 500000 deaths per year worldwide. Patients with breast cancer die unequivocally because of the development of incurable distant metastases and not because of symptoms related to the primary site. Understanding the complex, yet fundamental mechanisms driving breast cancer metastasis is critical to develop therapies tailored to this disease.
The current understanding of how metastasis occurs is derived primarily from mouse models and largely dominated by the notion that single migratory cancer cells within the primary tumor can actively disseminate to distant sites and develop as metastatic deposits. Unexpectedly, our very recent study on patient blood samples has shown that cancer cell groupings, held together through strong cell-cell junctions, can break off the primary tumor and form a metastatic lesion up to 50 times more efficiently than single migratory cancer cells (Aceto et al, Cell, 2014). These findings lead to new open questions, yet highlight a previously unappreciated and targetable mechanism of cancer dissemination.
Our preliminary data suggest that, among all types of cell-cell junctions, desmosomes and tight junctions are involved in this process, and therefore represent unprecedented options for developing a metastasis-tailored therapy for breast cancer.
The two predominant goals of this proposal are: first, to define the role of specific desmosome (DSG2) and tight junction (CLDN3 and TJP2) components in the development of metastasis. Second, to address their involvement in cellular signaling and response to therapy. These studies will not only use our first-of-a-kind in vivo models developed from patients with breast cancer metastases, but also cross the boundaries between basic science and clinical applications.
Our research has the long-term ambition to lead to a novel class of therapeutic agents tailored to block cell-cell junctions and prevent metastatic spread of cancer.
Max ERC Funding
1 744 921 €
Duration
Start date: 2016-03-01, End date: 2021-02-28
Project acronym HOW2WALKAGAIN
Project Mechanisms of recovery after severe spinal cord injury
Researcher (PI) Grégoire Richard Courtine
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Consolidator Grant (CoG), LS5, ERC-2015-CoG
Summary Severe spinal cord injury leads to a range of disabilities, including permanent motor impairments that seriously diminish the patients’ quality of life. In the framework of an ERC Starting Grant, my team and I developed a pragmatic therapy that restored supraspinal control of leg movement after complete paralysis in rats. However, the mechanisms underlying the effects of this intervention remain unknown. This fundamental knowledge is pivotal to operate a disruptive conversion from our empirical approach to an evidence-based strategy with clinical perspectives. Our therapy, termed neuroprosthetic rehabilitation, acts over two time windows. Immediately, electrical and chemical spinal cord stimulations mediate motor control of the paralysed hindlimbs. In the long term, will-powered training regimens enabled by electrochemical stimulation and robotic assistance promote neuroplasticity of residual connections—an extensive rewiring that reestablishes voluntary movement. Here, we propose to identify the circuit-level remodelling, computational principles, and molecular cues that govern the immediate and long-term recovery of motor functions. To address this knowledge gap, we will use our unique neuroprosthetic platform and next-generation experimental techniques for longitudinal assessment of neuroplasticity and function in freely behaving mice. These techniques combine optogenetics, circuit-level inactivation techniques, unconstrained chronic calcium imaging, virus-mediated tract-tracing and genetic manipulations. Our strategy consists of deploying a judicious association of these experimental techniques to establish causality between the reorganisation of the motor circuitry and functional recovery. This project will fertilize frontier research with new knowledge and ideas, ultimately accelerating clinical implementation of safer and more efficacious therapies to improve the quality of life for spinal cord injured individuals.
Summary
Severe spinal cord injury leads to a range of disabilities, including permanent motor impairments that seriously diminish the patients’ quality of life. In the framework of an ERC Starting Grant, my team and I developed a pragmatic therapy that restored supraspinal control of leg movement after complete paralysis in rats. However, the mechanisms underlying the effects of this intervention remain unknown. This fundamental knowledge is pivotal to operate a disruptive conversion from our empirical approach to an evidence-based strategy with clinical perspectives. Our therapy, termed neuroprosthetic rehabilitation, acts over two time windows. Immediately, electrical and chemical spinal cord stimulations mediate motor control of the paralysed hindlimbs. In the long term, will-powered training regimens enabled by electrochemical stimulation and robotic assistance promote neuroplasticity of residual connections—an extensive rewiring that reestablishes voluntary movement. Here, we propose to identify the circuit-level remodelling, computational principles, and molecular cues that govern the immediate and long-term recovery of motor functions. To address this knowledge gap, we will use our unique neuroprosthetic platform and next-generation experimental techniques for longitudinal assessment of neuroplasticity and function in freely behaving mice. These techniques combine optogenetics, circuit-level inactivation techniques, unconstrained chronic calcium imaging, virus-mediated tract-tracing and genetic manipulations. Our strategy consists of deploying a judicious association of these experimental techniques to establish causality between the reorganisation of the motor circuitry and functional recovery. This project will fertilize frontier research with new knowledge and ideas, ultimately accelerating clinical implementation of safer and more efficacious therapies to improve the quality of life for spinal cord injured individuals.
Max ERC Funding
1 998 715 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym HRMECH
Project Nucleases in homologous recombination: from basic principles to genome editing
Researcher (PI) Petr Cejka
Host Institution (HI) FONDAZIONE PER L ISTITUTO DI RICERCA IN BIOMEDICINA
Call Details Consolidator Grant (CoG), LS1, ERC-2015-CoG
Summary Homologous recombination plays a crucial role to repair DNA strand breaks that may occur spontaneously upon replication fork collapse, during the course of radio- or chemotherapy or in a programmed manner during meiosis. Understanding the molecular mechanisms of re-combinational repair is thus very important not only from a basic research viewpoint, but it is also highly relevant for human health. Here, we will define the function of nucleases in homol-ogous recombination. First, we will study the initial steps in this pathway. We could show previously that the S. cerevisiae Sae2 protein promotes the endonuclease activity of the Mre11-Rad50-Xrs2 (MRX) complex near protein blocked DNA ends. This initiates nucleolytic resection of DNA breaks and activates homologous recombination. Our biochemical setup will be instrumental to define how is the activity of Sae2 regulated by phosphorylation on a mech-anistic level and how physiological protein blocks direct the Mre11 endonuclease. We will ex-tend the study to the human system, and attempt to apply the gained knowledge to improve the efficiency of genome editing by activating recombination in conjunction with the CRISPR-Cas9 nuclease system. Second, we will study how homologous recombination promotes gen-eration of genetic diversity during sexual reproduction. DNA strand breaks are introduced in-tentionally during the prophase of the first meiotic division. They are then processed by the recombination machinery into Holliday junction intermediates. These joint molecules are preferentially converted into crossovers in meiosis, resulting in exchange of genetic infor-mation between the maternal and paternal DNA molecules. This is dependent on the Mlh1-Mlh3 nuclease through a yet unknown mechanism. We will study how Mlh1-Mlh3 in complex with other proteins guarantee crossover outcome to promote diversity of the progeny.
Summary
Homologous recombination plays a crucial role to repair DNA strand breaks that may occur spontaneously upon replication fork collapse, during the course of radio- or chemotherapy or in a programmed manner during meiosis. Understanding the molecular mechanisms of re-combinational repair is thus very important not only from a basic research viewpoint, but it is also highly relevant for human health. Here, we will define the function of nucleases in homol-ogous recombination. First, we will study the initial steps in this pathway. We could show previously that the S. cerevisiae Sae2 protein promotes the endonuclease activity of the Mre11-Rad50-Xrs2 (MRX) complex near protein blocked DNA ends. This initiates nucleolytic resection of DNA breaks and activates homologous recombination. Our biochemical setup will be instrumental to define how is the activity of Sae2 regulated by phosphorylation on a mech-anistic level and how physiological protein blocks direct the Mre11 endonuclease. We will ex-tend the study to the human system, and attempt to apply the gained knowledge to improve the efficiency of genome editing by activating recombination in conjunction with the CRISPR-Cas9 nuclease system. Second, we will study how homologous recombination promotes gen-eration of genetic diversity during sexual reproduction. DNA strand breaks are introduced in-tentionally during the prophase of the first meiotic division. They are then processed by the recombination machinery into Holliday junction intermediates. These joint molecules are preferentially converted into crossovers in meiosis, resulting in exchange of genetic infor-mation between the maternal and paternal DNA molecules. This is dependent on the Mlh1-Mlh3 nuclease through a yet unknown mechanism. We will study how Mlh1-Mlh3 in complex with other proteins guarantee crossover outcome to promote diversity of the progeny.
Max ERC Funding
1 999 014 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym HybCell
Project Engineering of hybrid cells using lab-on-chip technology
Researcher (PI) Petra Stephanie Dittrich
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Consolidator Grant (CoG), LS9, ERC-2015-CoG
Summary The overall aim of the here described projects is to learn fundamental characteristics of cellular organization and compartmentalization, in particular the role of the lipid membrane, and to exploit this knowledge for engineering minimal cells with a great impact in the context of synthetic biology and also for pharmaceutical and medical applications. The first major objective aims at combining natural cell membranes with synthetic membranes to form defined hybrid systems with the size of cells or cell organelles. This approach has the intriguing advantage that the membrane receptors or channels are reconstituted in the hybrid cell and remain functional. In consequence, signaling pathways of a cell can be mimicked and therefore, the vesicles can be addressed similar to a cell or can serve as cell-free sensor. The second major objective addresses the challenge to build multi-compartment systems. In a defined number and formulation, smaller compartments are enclosed in a larger vesicle and carry other constituents than the lumen of the larger host vesicles (catalysts or enzymes, respectively; DNA; buffer systems; other active biomolecules). With the acquired fundamental knowledge on membrane permeability and fusion, multi-step reactions can be conducted, where several compartments are involved, just like in a living cell. The key methods to address these challenges are based on lab-on-chip technology that provide the unique potential to systematically investigate membrane properties by allowing precise formation, positioning, manipulation and analysis of the membranes; together with many more advantages such as the fast and controlled fluid supply, the possibility of tailoring the chemical surface patterns and surface topology and the application of electrical fields. Microfluidic platform will allow going far beyond the existing methods in membrane research, so that controlled bottom-up formation of simple to more and more complex systems becomes possible.
Summary
The overall aim of the here described projects is to learn fundamental characteristics of cellular organization and compartmentalization, in particular the role of the lipid membrane, and to exploit this knowledge for engineering minimal cells with a great impact in the context of synthetic biology and also for pharmaceutical and medical applications. The first major objective aims at combining natural cell membranes with synthetic membranes to form defined hybrid systems with the size of cells or cell organelles. This approach has the intriguing advantage that the membrane receptors or channels are reconstituted in the hybrid cell and remain functional. In consequence, signaling pathways of a cell can be mimicked and therefore, the vesicles can be addressed similar to a cell or can serve as cell-free sensor. The second major objective addresses the challenge to build multi-compartment systems. In a defined number and formulation, smaller compartments are enclosed in a larger vesicle and carry other constituents than the lumen of the larger host vesicles (catalysts or enzymes, respectively; DNA; buffer systems; other active biomolecules). With the acquired fundamental knowledge on membrane permeability and fusion, multi-step reactions can be conducted, where several compartments are involved, just like in a living cell. The key methods to address these challenges are based on lab-on-chip technology that provide the unique potential to systematically investigate membrane properties by allowing precise formation, positioning, manipulation and analysis of the membranes; together with many more advantages such as the fast and controlled fluid supply, the possibility of tailoring the chemical surface patterns and surface topology and the application of electrical fields. Microfluidic platform will allow going far beyond the existing methods in membrane research, so that controlled bottom-up formation of simple to more and more complex systems becomes possible.
Max ERC Funding
1 971 250 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym HyperQC
Project Hyper Quantum Criticality
Researcher (PI) Christian Rueegg
Host Institution (HI) PAUL SCHERRER INSTITUT
Call Details Consolidator Grant (CoG), PE3, ERC-2015-CoG
Summary Hyper Quantum Criticality – HyperQC is a major initiative with the aim of generating and controlling novel phases of correlated magnetic quantum matter, and of exploring them in high-precision experiments. A combination of new capabilities enabled by the development of instrumentation, pioneering ultra-fast studies and experiments on magnetic model materials will allow both the exploration of fundamental Hamiltonians and fully quantitative tests of quantum criticality in hyper-parameter space: temperature, magnetic field, pressure, energy, momentum and time.
HyperQC - Challenge. Direct control of the dimensionality, symmetry, chemical potential and interactions in magnetic materials is achieved by a new experimental set-up combining high magnetic fields and pressures with ultra-low temperatures, which will be installed on neutron scattering instruments at the Swiss Spallation Neutron Source SINQ. Experiments on a number of magnetic model materials allow the realization and high-precision measurements of the multi-dimensional quantum critical properties of systems including magnon Bose-Einstein Condensates, spin Luttinger liquids and renormalized classical ordered phases, as well as of other many-body phenomena in quantum spin systems.
HyperQC – Vision. Experiments on the time-dependent, non-equilibrium properties of quantum magnets and quantum critical points are new. Ultra-short laser and X-ray pulses are able to alter and measure the lattice, spin, orbital and electronic properties of solids, which has been demonstrated in recent experiments on multiferroic materials and superconductors. The effects of such pulses on a number of well-characterized model quantum magnets will be investigated with the aim of studying the time-dependent dynamics of quantum critical systems for the first time.
Summary
Hyper Quantum Criticality – HyperQC is a major initiative with the aim of generating and controlling novel phases of correlated magnetic quantum matter, and of exploring them in high-precision experiments. A combination of new capabilities enabled by the development of instrumentation, pioneering ultra-fast studies and experiments on magnetic model materials will allow both the exploration of fundamental Hamiltonians and fully quantitative tests of quantum criticality in hyper-parameter space: temperature, magnetic field, pressure, energy, momentum and time.
HyperQC - Challenge. Direct control of the dimensionality, symmetry, chemical potential and interactions in magnetic materials is achieved by a new experimental set-up combining high magnetic fields and pressures with ultra-low temperatures, which will be installed on neutron scattering instruments at the Swiss Spallation Neutron Source SINQ. Experiments on a number of magnetic model materials allow the realization and high-precision measurements of the multi-dimensional quantum critical properties of systems including magnon Bose-Einstein Condensates, spin Luttinger liquids and renormalized classical ordered phases, as well as of other many-body phenomena in quantum spin systems.
HyperQC – Vision. Experiments on the time-dependent, non-equilibrium properties of quantum magnets and quantum critical points are new. Ultra-short laser and X-ray pulses are able to alter and measure the lattice, spin, orbital and electronic properties of solids, which has been demonstrated in recent experiments on multiferroic materials and superconductors. The effects of such pulses on a number of well-characterized model quantum magnets will be investigated with the aim of studying the time-dependent dynamics of quantum critical systems for the first time.
Max ERC Funding
2 328 649 €
Duration
Start date: 2016-12-01, End date: 2021-11-30
Project acronym Immune Regulation
Project How Infection History Shapes the Immune System: Pathogen-induced Changes in Regulatory T Cells
Researcher (PI) Nicole Christine Joller
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Starting Grant (StG), LS6, ERC-2015-STG
Summary Studying host-pathogen interactions by focusing on the interaction of a single pathogen with the host has defined our understanding of these events and the insights gained form the basis for the therapeutic and vaccination strategies we use today. However, people become infected with multiple pathogens throughout their lifetime, at times even simultaneously. Still, it is largely unknown how the immune response to one pathogen alters the body’s ability to respond to a second infectious agent or the susceptibility to autoimmunity or cancer. This project will address this question by focusing on infection-induced changes in regulatory T cells (Tregs) as they may lead to biased suppression and changes in the nature of subsequent immune responses.
Our efforts will focus on two areas: In a first part, we will use single cell RNA-Seq to address how infections shape the Treg compartment by defining the specialized Treg subsets generated during polarized infectious settings and analyzing how they interact with effector T cells. Based on the depth of information we expect to obtain from this approach, we envisage finding thus far unappreciated interactions and functions of Tregs in the course of an immune response. The second part will investigate how an altered Treg compartment, either through genetic modifications or infection-induced, affects disease susceptibility. In this context, we will also address stability and persistence of pathogen-induced changes in the Treg compartment. Collectively the proposed experiments will allow us to start addressing how preceding infections affect disease susceptibility. Deciphering how infection history shapes the Treg compartment and how this affects susceptibility to future challenges will lay the groundwork for addressing this question more broadly in the future and as such will likely have a transformative impact on the field.
Summary
Studying host-pathogen interactions by focusing on the interaction of a single pathogen with the host has defined our understanding of these events and the insights gained form the basis for the therapeutic and vaccination strategies we use today. However, people become infected with multiple pathogens throughout their lifetime, at times even simultaneously. Still, it is largely unknown how the immune response to one pathogen alters the body’s ability to respond to a second infectious agent or the susceptibility to autoimmunity or cancer. This project will address this question by focusing on infection-induced changes in regulatory T cells (Tregs) as they may lead to biased suppression and changes in the nature of subsequent immune responses.
Our efforts will focus on two areas: In a first part, we will use single cell RNA-Seq to address how infections shape the Treg compartment by defining the specialized Treg subsets generated during polarized infectious settings and analyzing how they interact with effector T cells. Based on the depth of information we expect to obtain from this approach, we envisage finding thus far unappreciated interactions and functions of Tregs in the course of an immune response. The second part will investigate how an altered Treg compartment, either through genetic modifications or infection-induced, affects disease susceptibility. In this context, we will also address stability and persistence of pathogen-induced changes in the Treg compartment. Collectively the proposed experiments will allow us to start addressing how preceding infections affect disease susceptibility. Deciphering how infection history shapes the Treg compartment and how this affects susceptibility to future challenges will lay the groundwork for addressing this question more broadly in the future and as such will likely have a transformative impact on the field.
Max ERC Funding
1 499 755 €
Duration
Start date: 2016-06-01, End date: 2021-05-31
Project acronym Immune-senescence
Project Dual targeting of senescence and tumor immunity for cancer therapy
Researcher (PI) Andrea Alimonti
Host Institution (HI) FONDAZIONE PER L'ISTITUTO ONCOLOGICO DI RICERCA (IOR)
Call Details Consolidator Grant (CoG), LS4, ERC-2015-CoG
Summary We have previously demonstrated that cellular senescence opposes tumorigenesis thereby opening up new potential opportunities for cancer treatment. Senescence and tumor immunity in cancer are tightly interconnected. Tumor-infiltrating immune cells promote the clearance of senescent tumor cells thereby contributing to the tumor suppressive function of senescence. Moreover, T lymphocytes can drive senescence in cancers by secreting different cytokines in the tumor microenvironment. We have also recently reported that GR1+ myeloid cells antagonize treatment-induced senescence (TIS) and that compounds that block the tumor recruitment of GR1+ cells enhance TIS. Major objective of this proposal is to characterize the immune landscape of different prostate cancer mouse models in order to develop novel treatment modalities that combine pro-senescence compounds with immunotherapy. Using proteomics and bioinformatics approaches, we will assess how the genetic background of prostate tumors, shapes the tumor microenvironment and immune response during TIS. Next, we will define the mechanisms that regulate the recruitment and activation of myeloid derived suppressive cells, macrophages and B-lymphocytes in Pten deficient prostate tumors by focusing on a novel class of secreted factors identified in these tumors. We will also assess in vivo whether the secretome of tumor cells can transmit senescence to TILs and compounds that interfere with the secretome can prevent immunosenescence. Finally, we will develop monoclonal antibodies directed towards senescent tumors cells that we will use as diagnostic and therapeutic tools. These antibodies will be used as biomarkers to detect senescent tumor cells in prostate cancers and will be tested in pre-clinical trials to assess whether they improve tumor clearance during TIS. Our findings will form the basis for future clinical trials in prostate cancer patients.
Summary
We have previously demonstrated that cellular senescence opposes tumorigenesis thereby opening up new potential opportunities for cancer treatment. Senescence and tumor immunity in cancer are tightly interconnected. Tumor-infiltrating immune cells promote the clearance of senescent tumor cells thereby contributing to the tumor suppressive function of senescence. Moreover, T lymphocytes can drive senescence in cancers by secreting different cytokines in the tumor microenvironment. We have also recently reported that GR1+ myeloid cells antagonize treatment-induced senescence (TIS) and that compounds that block the tumor recruitment of GR1+ cells enhance TIS. Major objective of this proposal is to characterize the immune landscape of different prostate cancer mouse models in order to develop novel treatment modalities that combine pro-senescence compounds with immunotherapy. Using proteomics and bioinformatics approaches, we will assess how the genetic background of prostate tumors, shapes the tumor microenvironment and immune response during TIS. Next, we will define the mechanisms that regulate the recruitment and activation of myeloid derived suppressive cells, macrophages and B-lymphocytes in Pten deficient prostate tumors by focusing on a novel class of secreted factors identified in these tumors. We will also assess in vivo whether the secretome of tumor cells can transmit senescence to TILs and compounds that interfere with the secretome can prevent immunosenescence. Finally, we will develop monoclonal antibodies directed towards senescent tumors cells that we will use as diagnostic and therapeutic tools. These antibodies will be used as biomarkers to detect senescent tumor cells in prostate cancers and will be tested in pre-clinical trials to assess whether they improve tumor clearance during TIS. Our findings will form the basis for future clinical trials in prostate cancer patients.
Max ERC Funding
2 000 000 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym IMMUNO-PEPTALK
Project Regulation of plant receptor kinase-mediated immunity by endogenous peptides and their receptors
Researcher (PI) Cyril Boris ZIPFEL
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Consolidator Grant (CoG), LS1, ERC-2017-COG
Summary Plant receptor kinases are major pattern recognition receptors (PRRs) that function as part of dynamic multimeric complexes to perceive pathogen-associated molecular patterns or host-derived damage-associated molecular patterns at the plasma membrane (PM). Our long-term objective is to decipher the molecular basis of plant innate immunity and to understand how plant receptor kinases work.
Our recent findings point to an important role of endogenous peptides in the regulation of plant innate immune signaling. The main aim of this proposal is to understand how these endogenous peptides and their corresponding receptors regulate plant innate immune signaling. The central hypotheses of this research are that: (i) a subset of plant endogenous peptides are perceived by receptor kinases to fine-tune dynamically plant innate immune signaling, and thus act as ‘phytocytokines’; (ii) these phytocytokines and their receptors regulate the formation of active immune-signaling nanoclusters at the PM; and (iii) phytocytokine receptors participate in the sensory continuum represented by the plant PM and the cell wall to respond dynamically to environmental challenges.
We will pursue the following specific objectives:
(1) decipher the regulation, function, and perception of RALF peptides by malectin-like receptor kinases during immunity;
(2) elucidate the formation, composition, and function of PM immune receptor nanoclusters;
(3) reveal the function of the receptor kinase MIK2 and its ligand(s) in immunity.
Through a balanced combination of straight-forward and high risk/high gain biochemical, biophysical, bioimaging, and genetics approaches, this project will provide groundbreaking insights into the molecular mechanisms underlying the establishment and regulation of plant innate immune signaling, but also into the general mechanisms that control plant receptor kinase functions and by which the myriad endogenous peptides encoded by plant genomes control environmental sensing.
Summary
Plant receptor kinases are major pattern recognition receptors (PRRs) that function as part of dynamic multimeric complexes to perceive pathogen-associated molecular patterns or host-derived damage-associated molecular patterns at the plasma membrane (PM). Our long-term objective is to decipher the molecular basis of plant innate immunity and to understand how plant receptor kinases work.
Our recent findings point to an important role of endogenous peptides in the regulation of plant innate immune signaling. The main aim of this proposal is to understand how these endogenous peptides and their corresponding receptors regulate plant innate immune signaling. The central hypotheses of this research are that: (i) a subset of plant endogenous peptides are perceived by receptor kinases to fine-tune dynamically plant innate immune signaling, and thus act as ‘phytocytokines’; (ii) these phytocytokines and their receptors regulate the formation of active immune-signaling nanoclusters at the PM; and (iii) phytocytokine receptors participate in the sensory continuum represented by the plant PM and the cell wall to respond dynamically to environmental challenges.
We will pursue the following specific objectives:
(1) decipher the regulation, function, and perception of RALF peptides by malectin-like receptor kinases during immunity;
(2) elucidate the formation, composition, and function of PM immune receptor nanoclusters;
(3) reveal the function of the receptor kinase MIK2 and its ligand(s) in immunity.
Through a balanced combination of straight-forward and high risk/high gain biochemical, biophysical, bioimaging, and genetics approaches, this project will provide groundbreaking insights into the molecular mechanisms underlying the establishment and regulation of plant innate immune signaling, but also into the general mechanisms that control plant receptor kinase functions and by which the myriad endogenous peptides encoded by plant genomes control environmental sensing.
Max ERC Funding
1 999 999 €
Duration
Start date: 2018-06-01, End date: 2023-05-31
Project acronym ImPRESS
Project Imaging Perfusion Restrictions from Extracellular Solid Stress
Researcher (PI) Kyrre Eeg Emblem
Host Institution (HI) OSLO UNIVERSITETSSYKEHUS HF
Call Details Starting Grant (StG), LS7, ERC-2017-STG
Summary Even the perfect cancer drug must reach its target to have an effect. The ImPRESS project main objective is to develop a novel imaging paradigm coined Restricted Perfusion Imaging (RPI) to reveal - for the first time in humans - vascular restrictions in solid cancers caused by mechanical solid stress, and use RPI to demonstrate that alleviating this force will repair the cancerous microenvironment and improve therapeutic response. Delivery of anti-cancer drugs to the tumor is critically dependent on a functional vascular bed. Developing biomarkers that can measure how mechanical forces in a solid tumor impair perfusion and promotes therapy resistance is essential for treatment of disease.
The ImPRESS project is based on the following observations; (I) pre-clinical work suggests that therapies targeting the tumor microenvironment and extracellular matrix may enhance drug delivery by decompressing tumor vessels; (II) results from animal models may not be transferable because compressive forces in human tumors in vivo can be many times higher; and (III) there are no available imaging technologies for medical diagnostics of solid stress in human cancers. Using RPI, ImPRESS will conduct a comprehensive series of innovative studies in brain cancer patients to answer three key questions: (Q1) Can we image vascular restrictions in human cancers and map how the vasculature changes with tumor growth or treatment? (Q2) Can we use medical engineering to image solid stress in vivo? (Q3) Can RPI show that matrix-depleting drugs improve patient response to conventional chemo- and radiation therapy as well as new targeted therapies?
The ImPRESS project holds a unique position to answer these questions by our unrivaled experience with advanced imaging of cancer patients. With successful delivery, ImPRESS will have a direct impact on patient treatment and establish an imaging paradigm that will pave the way for new scientific knowledge on how to revitalize cancer therapies.
Summary
Even the perfect cancer drug must reach its target to have an effect. The ImPRESS project main objective is to develop a novel imaging paradigm coined Restricted Perfusion Imaging (RPI) to reveal - for the first time in humans - vascular restrictions in solid cancers caused by mechanical solid stress, and use RPI to demonstrate that alleviating this force will repair the cancerous microenvironment and improve therapeutic response. Delivery of anti-cancer drugs to the tumor is critically dependent on a functional vascular bed. Developing biomarkers that can measure how mechanical forces in a solid tumor impair perfusion and promotes therapy resistance is essential for treatment of disease.
The ImPRESS project is based on the following observations; (I) pre-clinical work suggests that therapies targeting the tumor microenvironment and extracellular matrix may enhance drug delivery by decompressing tumor vessels; (II) results from animal models may not be transferable because compressive forces in human tumors in vivo can be many times higher; and (III) there are no available imaging technologies for medical diagnostics of solid stress in human cancers. Using RPI, ImPRESS will conduct a comprehensive series of innovative studies in brain cancer patients to answer three key questions: (Q1) Can we image vascular restrictions in human cancers and map how the vasculature changes with tumor growth or treatment? (Q2) Can we use medical engineering to image solid stress in vivo? (Q3) Can RPI show that matrix-depleting drugs improve patient response to conventional chemo- and radiation therapy as well as new targeted therapies?
The ImPRESS project holds a unique position to answer these questions by our unrivaled experience with advanced imaging of cancer patients. With successful delivery, ImPRESS will have a direct impact on patient treatment and establish an imaging paradigm that will pave the way for new scientific knowledge on how to revitalize cancer therapies.
Max ERC Funding
1 499 638 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym In-Need
Project III-Nitrides Nanostructures for Energy-Efficiency Devices
Researcher (PI) Elison de Nazareth Matioli
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Starting Grant (StG), PE7, ERC-2015-STG
Summary Energy efficiency offers a vast and low-cost resource to address future energy demand while reducing carbon dioxide emissions. The unique properties of III-Nitride semiconductors make them the ideal material for future energy challenges. Their outstanding optical properties are revolutionizing the world with efficient LED light bulbs. Even greater impact is anticipated for power electronics. The much larger Baliga’s figure of merit of GaN compared to SiC and Si enables drastically more efficient power switches, which are at the heart of any energy generation/management system. However, current III-Nitride device performance is far from the fundamental materials capabilities, and severe thermal management and reliability limitations hinder their full potential for energy-efficiency.
The In-Need proposes a unique approach to address concurrently all current challenges based on advanced nanostructures designed to optimally exploit the superior properties of the new bulk GaN materials. Nanostructuring distinct regions of the device will allow a precise control over their intrinsic characteristics. To address reliability issues and yield unprecedented device performance, these nanostructures will be combined to the excellent properties of bulk GaN. This will open opportunities for new vertical devices, enabling smaller structures with larger voltages and higher efficiencies. Efficient thermal management will be achieved with ultra-near junction cooling. Nano/micro-channels filled with high thermal conductivity materials or coolants will be embedded inside the device.
We believe our judicious nano-scale design of new high-performing materials will result in state-of-the-art devices, leading to a large-scale impact in energy efficiency. The miniaturization and large power density enabled by our approach will allow future integration of power devices into single power microchips. This will revolutionize energy use much like Silicon microchips did for information processing.
Summary
Energy efficiency offers a vast and low-cost resource to address future energy demand while reducing carbon dioxide emissions. The unique properties of III-Nitride semiconductors make them the ideal material for future energy challenges. Their outstanding optical properties are revolutionizing the world with efficient LED light bulbs. Even greater impact is anticipated for power electronics. The much larger Baliga’s figure of merit of GaN compared to SiC and Si enables drastically more efficient power switches, which are at the heart of any energy generation/management system. However, current III-Nitride device performance is far from the fundamental materials capabilities, and severe thermal management and reliability limitations hinder their full potential for energy-efficiency.
The In-Need proposes a unique approach to address concurrently all current challenges based on advanced nanostructures designed to optimally exploit the superior properties of the new bulk GaN materials. Nanostructuring distinct regions of the device will allow a precise control over their intrinsic characteristics. To address reliability issues and yield unprecedented device performance, these nanostructures will be combined to the excellent properties of bulk GaN. This will open opportunities for new vertical devices, enabling smaller structures with larger voltages and higher efficiencies. Efficient thermal management will be achieved with ultra-near junction cooling. Nano/micro-channels filled with high thermal conductivity materials or coolants will be embedded inside the device.
We believe our judicious nano-scale design of new high-performing materials will result in state-of-the-art devices, leading to a large-scale impact in energy efficiency. The miniaturization and large power density enabled by our approach will allow future integration of power devices into single power microchips. This will revolutionize energy use much like Silicon microchips did for information processing.
Max ERC Funding
1 750 000 €
Duration
Start date: 2016-02-01, End date: 2021-01-31
Project acronym InCell
Project High speed AFM imaging of molecular processes inside living cells
Researcher (PI) Georg FANTNER
Host Institution (HI) ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE
Call Details Consolidator Grant (CoG), PE3, ERC-2017-COG
Summary Imaging the inside of living cells with single nanometre resolution has been a long-standing dream in bio-microscopy. Direct observation of changes to molecular networks inside of living cells would revolutionize the way we study structural cell biology. Unfortunately, no such tool exists. Atomic force microscopy (AFM) is the closest we have, to nanoscale functional imaging of cells in their native, fluid environment. However, it is limited to imaging the outside of the cell.
With InCell, I will remedy this by developing an AFM capable of imaging the inside of living cells. The approach is based on a microfabricated high speed AFM cantilever encased in a double barrel patch-clamp shell. The patch clamp shell seals onto the plasma membrane of the cell, so that the tip of the AFM cantilever can enter the cell without causing the cytosol to leak out. Parasitic interactions of the AFM tip with the cytosol will be subtracted from the cantilever deflection signal, using high speed photo-thermal off-resonance tapping (PT-ORT), a novel AFM mode we have recently developed in my lab. This allows the extraction of the true tip-sample interaction, even in viscous fluids. A dedicated InCell HS-AFM combined with confocal optical microscopy will be used to guide the InCell cantilever inside the cell to the area of interest.
Using this minimally invasive technique we will study the formation of clathrin coated pits, a crucial part of endocytosis. By imaging for the first time the nanoscale dynamics of this process in living cells, we aim to answer fundamental questions about the clathrin coat assembly. We will characterize the kinetics, stability and force generation by the clathrin lattice. This will be the first example of how enabling nanoscale imaging inside living cells will be a game changer in cell biology. It will open up a myriad of possibilities for the study of vesicular transport, viral and bacterial infection, nuclear pore transport, cell signalling and many more.
Summary
Imaging the inside of living cells with single nanometre resolution has been a long-standing dream in bio-microscopy. Direct observation of changes to molecular networks inside of living cells would revolutionize the way we study structural cell biology. Unfortunately, no such tool exists. Atomic force microscopy (AFM) is the closest we have, to nanoscale functional imaging of cells in their native, fluid environment. However, it is limited to imaging the outside of the cell.
With InCell, I will remedy this by developing an AFM capable of imaging the inside of living cells. The approach is based on a microfabricated high speed AFM cantilever encased in a double barrel patch-clamp shell. The patch clamp shell seals onto the plasma membrane of the cell, so that the tip of the AFM cantilever can enter the cell without causing the cytosol to leak out. Parasitic interactions of the AFM tip with the cytosol will be subtracted from the cantilever deflection signal, using high speed photo-thermal off-resonance tapping (PT-ORT), a novel AFM mode we have recently developed in my lab. This allows the extraction of the true tip-sample interaction, even in viscous fluids. A dedicated InCell HS-AFM combined with confocal optical microscopy will be used to guide the InCell cantilever inside the cell to the area of interest.
Using this minimally invasive technique we will study the formation of clathrin coated pits, a crucial part of endocytosis. By imaging for the first time the nanoscale dynamics of this process in living cells, we aim to answer fundamental questions about the clathrin coat assembly. We will characterize the kinetics, stability and force generation by the clathrin lattice. This will be the first example of how enabling nanoscale imaging inside living cells will be a game changer in cell biology. It will open up a myriad of possibilities for the study of vesicular transport, viral and bacterial infection, nuclear pore transport, cell signalling and many more.
Max ERC Funding
1 999 925 €
Duration
Start date: 2018-04-01, End date: 2023-03-31
Project acronym INCLUDE
Project Indigenous Communities, Land Use and Tropical Deforestation
Researcher (PI) Michele Graziano Ceddia
Host Institution (HI) UNIVERSITAET BERN
Call Details Consolidator Grant (CoG), SH3, ERC-2015-CoG
Summary Tropical deforestation is an important contributor to climate change, through the release of significant amounts of carbon in the atmosphere. The main proximate cause of deforestation in tropical regions is agricultural expansion, followed by timber extraction. The general objective of this research is to understand how the interaction of technological, environmental, economic and social factors influence land use dynamics, including household decisions, about agricultural expansion and resource extraction in sensitive tropical regions. More specific questions relate to the role of various governance structures, particularly those recognizing common property regimes of land tenure to indigenous and rural communities, and the deliberative evaluation about the opportunity of reforming such structures in order to reduce deforestation and forest degradation. Although such aspects have been addressed in a variety of contexts, the approach proposed here is novel as a) it explicitly models the interaction between institutional, environmental, technological and socio-economic factors at different spatio-temporal scales, b) it specifically focuses on the governance structures associated with different land tenure regimes through the lenses of Social Network Analysis (SNA), c) uses a Q-methodology framework to develop a participatory approach to study stakeholders’ perspectives and attitudes on the necessary governance interventions to prevent deforestation and forest degradation and d) it assesses the relationships between agricultural expansion, deforestation, governance structures and stakeholders’ attitudes, with particular attention to the sensitivity of household land use decisions and resource extraction. In order to meet the research objectives, this project will focus on the province of Salta in the dry Chaco in North-Western Argentina, a region characterized by high rates of land cover change and the presence of indigenous/rural communities.
Summary
Tropical deforestation is an important contributor to climate change, through the release of significant amounts of carbon in the atmosphere. The main proximate cause of deforestation in tropical regions is agricultural expansion, followed by timber extraction. The general objective of this research is to understand how the interaction of technological, environmental, economic and social factors influence land use dynamics, including household decisions, about agricultural expansion and resource extraction in sensitive tropical regions. More specific questions relate to the role of various governance structures, particularly those recognizing common property regimes of land tenure to indigenous and rural communities, and the deliberative evaluation about the opportunity of reforming such structures in order to reduce deforestation and forest degradation. Although such aspects have been addressed in a variety of contexts, the approach proposed here is novel as a) it explicitly models the interaction between institutional, environmental, technological and socio-economic factors at different spatio-temporal scales, b) it specifically focuses on the governance structures associated with different land tenure regimes through the lenses of Social Network Analysis (SNA), c) uses a Q-methodology framework to develop a participatory approach to study stakeholders’ perspectives and attitudes on the necessary governance interventions to prevent deforestation and forest degradation and d) it assesses the relationships between agricultural expansion, deforestation, governance structures and stakeholders’ attitudes, with particular attention to the sensitivity of household land use decisions and resource extraction. In order to meet the research objectives, this project will focus on the province of Salta in the dry Chaco in North-Western Argentina, a region characterized by high rates of land cover change and the presence of indigenous/rural communities.
Max ERC Funding
1 952 183 €
Duration
Start date: 2016-11-01, End date: 2021-10-31