Project acronym BioCircuit
Project Programmable BioMolecular Circuits: Emulating Regulatory Functions in Living Cells Using a Bottom-Up Approach
Researcher (PI) Tom Antonius Franciscus De greef
Host Institution (HI) TECHNISCHE UNIVERSITEIT EINDHOVEN
Call Details Starting Grant (StG), PE4, ERC-2015-STG
Summary Programmable biomolecular circuits have received increasing attention in recent years as the scope of chemistry expands from the synthesis of individual molecules to the construction of chemical networks that can perform sophisticated functions such as logic operations and feedback control. Rationally engineered biomolecular circuits that robustly execute higher-order spatiotemporal behaviours typically associated with intracellular regulatory functions present a unique and uncharted platform to systematically explore the molecular logic and physical design principles of the cell. The experience gained by in-vitro construction of artificial cells displaying advanced system-level functions deepens our understanding of regulatory networks in living cells and allows theoretical assumptions and models to be refined in a controlled setting. This proposal combines elements from systems chemistry, in-vitro synthetic biology and micro-engineering and explores generic strategies to investigate the molecular logic of biology’s regulatory circuits by applying a physical chemistry-driven bottom-up approach. Progress in this field requires 1) proof-of-principle systems where in-vitro biomolecular circuits are designed to emulate characteristic system-level functions of regulatory circuits in living cells and 2) novel experimental tools to operate biochemical networks under out-of-equilibrium conditions. Here, a comprehensive research program is proposed that addresses these challenges by engineering three biochemical model systems that display elementary signal transduction and information processing capabilities. In addition, an open microfluidic droplet reactor is developed that will allow, for the first time, high-throughput analysis of biomolecular circuits encapsulated in water-in-oil droplets. An integral part of the research program is to combine the computational design of in-vitro circuits with novel biochemistry and innovative micro-engineering tools.
Summary
Programmable biomolecular circuits have received increasing attention in recent years as the scope of chemistry expands from the synthesis of individual molecules to the construction of chemical networks that can perform sophisticated functions such as logic operations and feedback control. Rationally engineered biomolecular circuits that robustly execute higher-order spatiotemporal behaviours typically associated with intracellular regulatory functions present a unique and uncharted platform to systematically explore the molecular logic and physical design principles of the cell. The experience gained by in-vitro construction of artificial cells displaying advanced system-level functions deepens our understanding of regulatory networks in living cells and allows theoretical assumptions and models to be refined in a controlled setting. This proposal combines elements from systems chemistry, in-vitro synthetic biology and micro-engineering and explores generic strategies to investigate the molecular logic of biology’s regulatory circuits by applying a physical chemistry-driven bottom-up approach. Progress in this field requires 1) proof-of-principle systems where in-vitro biomolecular circuits are designed to emulate characteristic system-level functions of regulatory circuits in living cells and 2) novel experimental tools to operate biochemical networks under out-of-equilibrium conditions. Here, a comprehensive research program is proposed that addresses these challenges by engineering three biochemical model systems that display elementary signal transduction and information processing capabilities. In addition, an open microfluidic droplet reactor is developed that will allow, for the first time, high-throughput analysis of biomolecular circuits encapsulated in water-in-oil droplets. An integral part of the research program is to combine the computational design of in-vitro circuits with novel biochemistry and innovative micro-engineering tools.
Max ERC Funding
1 887 180 €
Duration
Start date: 2016-08-01, End date: 2021-07-31
Project acronym CRESUCHIRP
Project Ultrasensitive Chirped-Pulse Fourier Transform mm-Wave Detection of Transient Species in Uniform Supersonic Flows for Reaction Kinetics Studies under Extreme Conditions
Researcher (PI) Ian SIMS
Host Institution (HI) UNIVERSITE DE RENNES I
Call Details Advanced Grant (AdG), PE4, ERC-2015-AdG
Summary This proposal aims to develop a combination of a chirped-pulse (sub)mm-wave rotational spectrometer with uniform supersonic flows generated by expansion of gases through Laval nozzles and apply it to problems at the frontiers of reaction kinetics.
The CRESU (Reaction Kinetics in Uniform Supersonic Flow) technique, combined with laser photochemical methods, has been applied with great success to perform research in gas-phase chemical kinetics at low temperatures, of particular interest for astrochemistry and cold planetary atmospheres. Recently, the PI has been involved in the development of a new combination of the revolutionary chirped pulse broadband rotational spectroscopy technique invented by B. Pate and co-workers with a novel pulsed CRESU, which we have called Chirped Pulse in Uniform Flow (CPUF). Rotational cooling by frequent collisions with cold buffer gas in the CRESU flow at ca. 20 K drastically increases the sensitivity of the technique, making broadband rotational spectroscopy suitable for detecting a wide range of transient species, such as photodissociation or reaction products.
We propose to exploit the exceptional quality of the Rennes CRESU flows to build an improved CPUF instrument (only the second worldwide), and use it for the quantitative determination of product branching ratios in elementary chemical reactions over a wide temperature range (data which are sorely lacking as input to models of gas-phase chemical environments), as well as the detection of reactive intermediates and the testing of modern reaction kinetics theory. Low temperature reactions will be initially targeted; as it is here that there is the greatest need for data. A challenging development of the technique towards the study of high temperature reactions is also proposed, exploiting existing expertise in high enthalpy sources.
Summary
This proposal aims to develop a combination of a chirped-pulse (sub)mm-wave rotational spectrometer with uniform supersonic flows generated by expansion of gases through Laval nozzles and apply it to problems at the frontiers of reaction kinetics.
The CRESU (Reaction Kinetics in Uniform Supersonic Flow) technique, combined with laser photochemical methods, has been applied with great success to perform research in gas-phase chemical kinetics at low temperatures, of particular interest for astrochemistry and cold planetary atmospheres. Recently, the PI has been involved in the development of a new combination of the revolutionary chirped pulse broadband rotational spectroscopy technique invented by B. Pate and co-workers with a novel pulsed CRESU, which we have called Chirped Pulse in Uniform Flow (CPUF). Rotational cooling by frequent collisions with cold buffer gas in the CRESU flow at ca. 20 K drastically increases the sensitivity of the technique, making broadband rotational spectroscopy suitable for detecting a wide range of transient species, such as photodissociation or reaction products.
We propose to exploit the exceptional quality of the Rennes CRESU flows to build an improved CPUF instrument (only the second worldwide), and use it for the quantitative determination of product branching ratios in elementary chemical reactions over a wide temperature range (data which are sorely lacking as input to models of gas-phase chemical environments), as well as the detection of reactive intermediates and the testing of modern reaction kinetics theory. Low temperature reactions will be initially targeted; as it is here that there is the greatest need for data. A challenging development of the technique towards the study of high temperature reactions is also proposed, exploiting existing expertise in high enthalpy sources.
Max ERC Funding
2 100 230 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym DigitalDoctors
Project Making Clinical Sense: A comparative study of how doctors learn in digital times
Researcher (PI) Anna Harris
Host Institution (HI) UNIVERSITEIT MAASTRICHT
Call Details Starting Grant (StG), SH3, ERC-2015-STG
Summary Digital technologies are reconfiguring medical practices in ways we still don’t understand. This research project seeks to examine the impact of the digital in medicine by studying the role of pedagogical technologies in how doctors learn the skills of their profession. It focuses on the centuries-old skill of physical examination; a sensing of the body, through the body. Increasingly medical students are learning these skills away from the bedside, through videos, simulated models and in laboratories. My research team will interrogate how learning with these technologies impacts on how doctors learn to sense bodies. Through the rich case of doctors-in-training the study addresses a key challenge in social scientific scholarship regarding how technologies, particularly those digital and virtual, are implicated in bodily, sensory knowing of the world. Our research takes a historically-attuned comparative anthropology approach, advancing the social study of medicine and medical education research in three new directions. First, a team of three ethnographers will attend to both spectacular and mundane technologies in medical education, recognising that everyday learning situations are filled with technologies old and new. Second, it offers the first comparative social study of medical education with fieldwork in three materially and culturally different settings in Western and Eastern Europe, and West Africa. Finally, the study brings historical and ethnographic research of technologies closer together, with a historian conducting oral histories and archival research at each site. Findings will have impact in the social sciences and education research by advancing understanding of how the digital and other technologies are implicated in skills learning. The study will develop novel digital-sensory methodologies and boldly, a new theory of techno-perception. These academic contributions will have practical relevance by improving the training of doctors in digital times.
Summary
Digital technologies are reconfiguring medical practices in ways we still don’t understand. This research project seeks to examine the impact of the digital in medicine by studying the role of pedagogical technologies in how doctors learn the skills of their profession. It focuses on the centuries-old skill of physical examination; a sensing of the body, through the body. Increasingly medical students are learning these skills away from the bedside, through videos, simulated models and in laboratories. My research team will interrogate how learning with these technologies impacts on how doctors learn to sense bodies. Through the rich case of doctors-in-training the study addresses a key challenge in social scientific scholarship regarding how technologies, particularly those digital and virtual, are implicated in bodily, sensory knowing of the world. Our research takes a historically-attuned comparative anthropology approach, advancing the social study of medicine and medical education research in three new directions. First, a team of three ethnographers will attend to both spectacular and mundane technologies in medical education, recognising that everyday learning situations are filled with technologies old and new. Second, it offers the first comparative social study of medical education with fieldwork in three materially and culturally different settings in Western and Eastern Europe, and West Africa. Finally, the study brings historical and ethnographic research of technologies closer together, with a historian conducting oral histories and archival research at each site. Findings will have impact in the social sciences and education research by advancing understanding of how the digital and other technologies are implicated in skills learning. The study will develop novel digital-sensory methodologies and boldly, a new theory of techno-perception. These academic contributions will have practical relevance by improving the training of doctors in digital times.
Max ERC Funding
1 361 507 €
Duration
Start date: 2016-03-01, End date: 2021-02-28
Project acronym DOPING-ON-DEMAND
Project Doping on Demand: precise and permanent control of the Fermi level in nanocrystal assemblies
Researcher (PI) Arjan Houtepen
Host Institution (HI) TECHNISCHE UNIVERSITEIT DELFT
Call Details Starting Grant (StG), PE4, ERC-2015-STG
Summary The aim of the work proposed here is to develop a completely new method to electronically dope assemblies of semiconductor nanocrystals (a.k.a quantum dots, QDs), and porous semiconductors in general. External dopants are added on demand in the form of electrolyte ions in the voids between QDs. These ions will be introduced via electrochemical charge injection, and will subsequently be immobilized by (1) freezing the electrolyte solvent at room temperature or (2) chemically linking the ions to ligands on the QD surface, or by a combination of both. Encapsulating doped QD films using atomic layer deposition will provide further stability. This will result in stable doped nanocrystal assemblies with a constant Fermi level that is controlled by the potential set during electrochemical charging.
QDs are small semiconductor crystals with size-tunable electronic properties that are considered promising materials for a range of opto-electronic applications. Electronic doping of QDs remains a big challenge even after two decades of research into this area. At the same time it is highly desired to dope QDs in a controlled way for applications such as LEDs, FETs and solar cells. This research project will provide unprecedented control over the doping level in QD films and will provided a major step in the optimization of optoelectronic devices based on QDs. The “Doping-on-Demand” approach will be exploited to develop degenerately doped, low-threshold QD lasers that can be operated under continuous wave excitation, and QD laser diodes that use electrical injection of charge carriers. The precise control of the Fermi-level will further be used to optimize pin junction QD solar cells and to develop, for the first time, QD pn junction solar cells with precise control over the Fermi levels.
Summary
The aim of the work proposed here is to develop a completely new method to electronically dope assemblies of semiconductor nanocrystals (a.k.a quantum dots, QDs), and porous semiconductors in general. External dopants are added on demand in the form of electrolyte ions in the voids between QDs. These ions will be introduced via electrochemical charge injection, and will subsequently be immobilized by (1) freezing the electrolyte solvent at room temperature or (2) chemically linking the ions to ligands on the QD surface, or by a combination of both. Encapsulating doped QD films using atomic layer deposition will provide further stability. This will result in stable doped nanocrystal assemblies with a constant Fermi level that is controlled by the potential set during electrochemical charging.
QDs are small semiconductor crystals with size-tunable electronic properties that are considered promising materials for a range of opto-electronic applications. Electronic doping of QDs remains a big challenge even after two decades of research into this area. At the same time it is highly desired to dope QDs in a controlled way for applications such as LEDs, FETs and solar cells. This research project will provide unprecedented control over the doping level in QD films and will provided a major step in the optimization of optoelectronic devices based on QDs. The “Doping-on-Demand” approach will be exploited to develop degenerately doped, low-threshold QD lasers that can be operated under continuous wave excitation, and QD laser diodes that use electrical injection of charge carriers. The precise control of the Fermi-level will further be used to optimize pin junction QD solar cells and to develop, for the first time, QD pn junction solar cells with precise control over the Fermi levels.
Max ERC Funding
1 497 842 €
Duration
Start date: 2016-01-01, End date: 2020-12-31
Project acronym ECOSPACE
Project EcoSpace: Spatial-Dynamic Modelling of Adaptation Options to Climate Change at the Ecosystem Scale
Researcher (PI) Lars Gerard Hein
Host Institution (HI) WAGENINGEN UNIVERSITY
Call Details Starting Grant (StG), SH3, ERC-2010-StG_20091209
Summary Climate change will necessitate adjustments in ecosystem management in order to maintain the functioning of ecosystems and the supply of ecosystem services. The aim of this project is to develop a spatially explicit, dynamic modelling approach for identifying and analysing adaptation strategies for ecosystem management.
In particular, the project will develop and apply a general, spatial model integrating climate change scenarios, ecosystem dynamics, response thresholds, ecosystem services supply and management options. The scientific innovation of the project lies in the application of an ecosystem services approach to analyse adaptation options, the integration of complex ecosystem dynamics and societal impacts, and the spatially explicit modelling of economic benefits supplied by ecosystems.
The general model will be tested and validated on the basis of three case studies, focussing on: (i) flood protection in the Netherlands; (ii) impacts of climate change in northern Norway; and (iii) optimising land use including production of biofuels stock in Kalimantan, Indonesia. The first two areas are particularly vulnerable to climate change, and the third area is relevant because of its importance as a source of biofuel (palmoil) with associated environmental and social impacts. Each case study will be implemented in collaboration with local and international partners, and will result in the identification of economic efficient, sustainable and equitable local adaptation options.
Summary
Climate change will necessitate adjustments in ecosystem management in order to maintain the functioning of ecosystems and the supply of ecosystem services. The aim of this project is to develop a spatially explicit, dynamic modelling approach for identifying and analysing adaptation strategies for ecosystem management.
In particular, the project will develop and apply a general, spatial model integrating climate change scenarios, ecosystem dynamics, response thresholds, ecosystem services supply and management options. The scientific innovation of the project lies in the application of an ecosystem services approach to analyse adaptation options, the integration of complex ecosystem dynamics and societal impacts, and the spatially explicit modelling of economic benefits supplied by ecosystems.
The general model will be tested and validated on the basis of three case studies, focussing on: (i) flood protection in the Netherlands; (ii) impacts of climate change in northern Norway; and (iii) optimising land use including production of biofuels stock in Kalimantan, Indonesia. The first two areas are particularly vulnerable to climate change, and the third area is relevant because of its importance as a source of biofuel (palmoil) with associated environmental and social impacts. Each case study will be implemented in collaboration with local and international partners, and will result in the identification of economic efficient, sustainable and equitable local adaptation options.
Max ERC Funding
759 600 €
Duration
Start date: 2010-11-01, End date: 2015-10-31
Project acronym FAMILIFE
Project Families of migrant origin: a life course perspective
Researcher (PI) Helga Antoinette Gerda De Valk
Host Institution (HI) KONINKLIJKE NEDERLANDSE AKADEMIE VAN WETENSCHAPPEN - KNAW
Call Details Starting Grant (StG), SH3, ERC-2010-StG_20091209
Summary Over the last decades European societies have become more ethnically diverse. However, a more comprehensive understanding of the life course and population dynamics in migrant families is still lacking. Ignoring a large share of the population in studies on family and population dynamics is exclusive and does not reflect reality. My project is first of all innovative in providing a more comprehensive overview of individual life courses of migrants: events in different life domains are linked and full life trajectories are analysed and explained. I will focus not only on the causes but also study the consequences of life course decisions. The second project goal is to explain the effect of migration on intergenerational solidarity and family ties. The analyses will link different phases in the life course as well as different generations. Families of different migrant and native origin will be compared in these parts. Third, I will make unique comparisons between the life course trajectories in the countries of origin and settlement of migrants. Bringing in the perspective of the sending country is original and crucial for understanding to what extent life course choices are related to the integration process in the host society, or to a trend that also occurs in the country of origin. A final major novelty of this project is that different recent data sources are linked within each of the components of the project. The combination of data from the Gender and Generations Survey (GGS), The Integration of the Second Generation (TIES) survey, the PAIRFAM survey, the European Social Survey, the Demographic and Health Surveys and the census, allow for a more complete understanding of the life courses of migrants and population dynamics in migrant families.
Summary
Over the last decades European societies have become more ethnically diverse. However, a more comprehensive understanding of the life course and population dynamics in migrant families is still lacking. Ignoring a large share of the population in studies on family and population dynamics is exclusive and does not reflect reality. My project is first of all innovative in providing a more comprehensive overview of individual life courses of migrants: events in different life domains are linked and full life trajectories are analysed and explained. I will focus not only on the causes but also study the consequences of life course decisions. The second project goal is to explain the effect of migration on intergenerational solidarity and family ties. The analyses will link different phases in the life course as well as different generations. Families of different migrant and native origin will be compared in these parts. Third, I will make unique comparisons between the life course trajectories in the countries of origin and settlement of migrants. Bringing in the perspective of the sending country is original and crucial for understanding to what extent life course choices are related to the integration process in the host society, or to a trend that also occurs in the country of origin. A final major novelty of this project is that different recent data sources are linked within each of the components of the project. The combination of data from the Gender and Generations Survey (GGS), The Integration of the Second Generation (TIES) survey, the PAIRFAM survey, the European Social Survey, the Demographic and Health Surveys and the census, allow for a more complete understanding of the life courses of migrants and population dynamics in migrant families.
Max ERC Funding
1 012 800 €
Duration
Start date: 2011-02-01, End date: 2016-08-31
Project acronym GEODIVERCITY
Project Analysing and Modelling the Geographical Diversity of Cities and Systems of Cities
Researcher (PI) Denise Pumain
Host Institution (HI) CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
Call Details Advanced Grant (AdG), SH3, ERC-2010-AdG_20100407
Summary Cities are today the main form of occupation of the Earth’s surface by human societies, and their development, combining design and self-organisation, sets numerous challenges in terms of collective territorial intelligence. On the scale of national and continent-wide territories, or indeed world-wide territories for the largest, cities are interconnected by way of numerous networks, in particular economic networks, that make them increasingly interdependent and associate them one with another in a process of co-evolution within which they have to structure and adapt conjointly. It is also important to underline the existence of path dependence processes, whereby the mark of previous choices is retained over several centuries in urban morphology, and often over several decades in social or economic specialisations. The present project sets out to gather the main stylised facts making up our knowledge about the dynamics of complex urban systems that has been acquired from observation and different analytical modelling processes, and to use them in new simulation models so as to reconstruct the interaction networks making up these systems. These models will be validated using a multi-scale procedure based on temporal geo-referenced data bases. The generic model SIMPOP will be completed and transferred to an open and scalable simulation platform, and specific versions will be developed and tested for the main regions of the world. The ultimate aim is to provide a series of validated models able to provide medium-term forecasts of the way in which the main urban and global territorial balances will evolve, and to explore scenarios whereby these city systems might adapt to the policies enacted aiming to counter the effects of climate change.
Summary
Cities are today the main form of occupation of the Earth’s surface by human societies, and their development, combining design and self-organisation, sets numerous challenges in terms of collective territorial intelligence. On the scale of national and continent-wide territories, or indeed world-wide territories for the largest, cities are interconnected by way of numerous networks, in particular economic networks, that make them increasingly interdependent and associate them one with another in a process of co-evolution within which they have to structure and adapt conjointly. It is also important to underline the existence of path dependence processes, whereby the mark of previous choices is retained over several centuries in urban morphology, and often over several decades in social or economic specialisations. The present project sets out to gather the main stylised facts making up our knowledge about the dynamics of complex urban systems that has been acquired from observation and different analytical modelling processes, and to use them in new simulation models so as to reconstruct the interaction networks making up these systems. These models will be validated using a multi-scale procedure based on temporal geo-referenced data bases. The generic model SIMPOP will be completed and transferred to an open and scalable simulation platform, and specific versions will be developed and tested for the main regions of the world. The ultimate aim is to provide a series of validated models able to provide medium-term forecasts of the way in which the main urban and global territorial balances will evolve, and to explore scenarios whereby these city systems might adapt to the policies enacted aiming to counter the effects of climate change.
Max ERC Funding
1 801 047 €
Duration
Start date: 2011-06-01, End date: 2016-05-31
Project acronym GP
Project COMBATING CLIMATE CHANGE: Political economy of Green Paradoxes
Researcher (PI) Cornelius Antonius Adrianus Maria Withagen
Host Institution (HI) STICHTING VU
Call Details Advanced Grant (AdG), SH3, ERC-2010-AdG_20100407
Summary Green Paradoxes are defined as the phenomenon that climate change policies can have counterproductive effects. For example, a subsidy on clean energy from renewable resources (solar, wind) will decrease the price at which this energy is supplied. But if the price still exceeds the cost of fossil fuel extraction and given that available stocks will be depleted, the price decrease will speed up the extraction from non-renewable resources, such as oil, that cause CO2 emissions. Hence, instead of delaying extraction the policy enhances initial extraction and emissions. In the design of environmental policy this effect is insufficiently taken into account, because the supply side of the market for fossil fuels is largely neglected.
The principal aim of this research proposal is to critically investigate Green Paradoxes and to come up with sound policy recommendations, taking into account the demand as well as the supply dimension of fossil fuels. Particular attention is paid to a broad and dynamic welfare analysis, allowing for concerns regarding sustainability. Especially relevant for tackling the research question is to provide a closer examination of imperfect competition on the oil market and to distinguish between dirty and clean alternatives for fossil fuel. In addition the proposal is to study the political economy of climate change policy to come up with proposals that not only muster global support but also address the adverse distributional aspects of climate change itself on developing economies and on the poorest of advanced economies who get hardest hit by green taxes. This requires not only the tools of modern political economy, but also the realms of second-best economics and the latest developments in public finance.
Summary
Green Paradoxes are defined as the phenomenon that climate change policies can have counterproductive effects. For example, a subsidy on clean energy from renewable resources (solar, wind) will decrease the price at which this energy is supplied. But if the price still exceeds the cost of fossil fuel extraction and given that available stocks will be depleted, the price decrease will speed up the extraction from non-renewable resources, such as oil, that cause CO2 emissions. Hence, instead of delaying extraction the policy enhances initial extraction and emissions. In the design of environmental policy this effect is insufficiently taken into account, because the supply side of the market for fossil fuels is largely neglected.
The principal aim of this research proposal is to critically investigate Green Paradoxes and to come up with sound policy recommendations, taking into account the demand as well as the supply dimension of fossil fuels. Particular attention is paid to a broad and dynamic welfare analysis, allowing for concerns regarding sustainability. Especially relevant for tackling the research question is to provide a closer examination of imperfect competition on the oil market and to distinguish between dirty and clean alternatives for fossil fuel. In addition the proposal is to study the political economy of climate change policy to come up with proposals that not only muster global support but also address the adverse distributional aspects of climate change itself on developing economies and on the poorest of advanced economies who get hardest hit by green taxes. This requires not only the tools of modern political economy, but also the realms of second-best economics and the latest developments in public finance.
Max ERC Funding
2 743 548 €
Duration
Start date: 2011-05-01, End date: 2016-04-30
Project acronym IsoMS
Project Mass Spectrometry of Isomeric Ions
Researcher (PI) Jana Roithova
Host Institution (HI) STICHTING KATHOLIEKE UNIVERSITEIT
Call Details Consolidator Grant (CoG), PE4, ERC-2015-CoG
Summary Mass spectrometry (MS) in combination with electrospray ionization (ESI) is one of the principal tools currently used to gain insight into newly developed catalytic reactions. It is used to identify key reaction intermediates and to study their structure and reactivity. This proposal is based on the combination of modern MS approaches with novel experiments in a unique cryo-trapping instrument. This combination allows the study of short-lived ionic species that cannot be studied by other known methods. Our distinguishing feature is the in situ helium-tagging of ions, which allows us to record their infrared spectra via a pre-dissociation technique. Here, we will go beyond this state-of-the-art approach in two directions:
(1) The unparalleled advantage of ESI-MS is its high sensitivity to low-abundant and reactive species. The pertinent question at the heart of all reaction mechanism investigations via MS is how the ions found in the gas-phase relate to the condensed-phase reaction. We will address this question using “Delayed Reactant Labelling”, which will directly link condensed phase kinetics to the abundance of isolated gaseous ions.
(2) We will take advantage of long storage times in our cryogenic linear quadrupole trap and expand the portfolio of the methods available to address mixtures of ions with the same mass. Isobaric mixtures are resolved in MS by differences in ion mobilities, i.e. the ions are separated by their mass-to-charge ratios and by their shapes. We will perform ion mobility separation directly in the trap by excitation of the ion secular motion using a resonant dipolar electric field. Further, we will combine cryo-trapping experiments with the probing or modifying of the stored ions by reactive collisions with neutral molecules. The mobility experiments and the reactivity probing will be routinely combined with spectroscopic experiments.
Summary
Mass spectrometry (MS) in combination with electrospray ionization (ESI) is one of the principal tools currently used to gain insight into newly developed catalytic reactions. It is used to identify key reaction intermediates and to study their structure and reactivity. This proposal is based on the combination of modern MS approaches with novel experiments in a unique cryo-trapping instrument. This combination allows the study of short-lived ionic species that cannot be studied by other known methods. Our distinguishing feature is the in situ helium-tagging of ions, which allows us to record their infrared spectra via a pre-dissociation technique. Here, we will go beyond this state-of-the-art approach in two directions:
(1) The unparalleled advantage of ESI-MS is its high sensitivity to low-abundant and reactive species. The pertinent question at the heart of all reaction mechanism investigations via MS is how the ions found in the gas-phase relate to the condensed-phase reaction. We will address this question using “Delayed Reactant Labelling”, which will directly link condensed phase kinetics to the abundance of isolated gaseous ions.
(2) We will take advantage of long storage times in our cryogenic linear quadrupole trap and expand the portfolio of the methods available to address mixtures of ions with the same mass. Isobaric mixtures are resolved in MS by differences in ion mobilities, i.e. the ions are separated by their mass-to-charge ratios and by their shapes. We will perform ion mobility separation directly in the trap by excitation of the ion secular motion using a resonant dipolar electric field. Further, we will combine cryo-trapping experiments with the probing or modifying of the stored ions by reactive collisions with neutral molecules. The mobility experiments and the reactivity probing will be routinely combined with spectroscopic experiments.
Max ERC Funding
1 612 500 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym KISMOL
Project Kinetics in Soft Molecular Layers
- from interstellar ices to polymorph control
Researcher (PI) Hermina Margaretha Cuppen
Host Institution (HI) STICHTING KATHOLIEKE UNIVERSITEIT
Call Details Starting Grant (StG), PE4, ERC-2010-StG_20091028
Summary This project centers around the investigation of molecular mobility in solid layers by a truly multidisciplinary
approach: combining the expertise from crystal growth, astrophysics, and chemistry. We aim to
answer long standing questions in the context of two cross-disciplinary applications: the formation and
evolution of interstellar ices and the solid state transition from one crystal structure — polymorph —
to another. The first is important for fundamental questions dealing with the origin of life, specifically
concerning the delivery of molecules—like H2O, CO2 and organic molecules—to habitable planets.
The second application is of great interest to the pharmaceutical industry where polymorph control is
crucial. The polymorphic form controls the solubility of the compound and is therefore key in dose
determination.
The goal of the investigation is to obtain an understanding of mobility in molecular layers on the
molecular level in order to (i) understand the processes in interstellar ices leading to the meeting of two
reactive species, (ii) identify the trapping mechanisms in interstellar ices, (iii) predict which molecules can survive in ices in the harsh environment of star and planet forming regions, (iv) determine which processes are fundamental to polymorphic conversion, and (v) design a way to inhibit or promote polymorphic conversion. I propose to study the mobility in molecular layers This project centers around the investigation of molecular mobility in solid layers by a truly multidisciplinary approach: combining the expertise from crystal growth, astrophysics, and chemistry. We aim to answer long standing questions in the context of two cross-disciplinary applications: the formation and evolution of interstellar ices and the solid state transition from one crystal structure - polymorph -to another. The first is important for fundamental questions dealing with the origin of life, specifically concerning the delivery of molecules -like H2O, CO2 and organic molecules - to habitable planets. The second application is of great interest to the pharmaceutical industry where polymorph control is crucial. The polymorphic form controls the solubility of the compound and is therefore key in dose determination.
The goal of the investigation is to obtain an understanding of mobility in molecular layers on the molecular level in order to (i) understand the processes in interstellar ices leading to the meeting of two reactive species, (ii) identify the trapping mechanisms in interstellar ices, (iii) predict which molecules can survive in ices in the harsh environment of star and planet forming regions, (iv) determine which processes are fundamental to polymorphic conversion, and (v) design a way to inhibit or promote polymorphic conversion. I propose to study the mobility in molecular layers using a combination of simulation techniques. The fundamental difficulty is to cover processes that take place over a large range of timescales: from picoseconds to years. Advances in numerical simulations have only recently made this research possible. Using Molecular Dynamics and Monte Carlo simulations we will study the interactions and processes in molecular layers on different lengthscales and covering a timescale range of roughly 20 orders of magnitude.
This ambitious research project will be carried out in the Institute for Molecules and Materials at the Radboud University in Nijmegen, but will also benefit from existing and new collaborations with local, national and international colleagues.
Summary
This project centers around the investigation of molecular mobility in solid layers by a truly multidisciplinary
approach: combining the expertise from crystal growth, astrophysics, and chemistry. We aim to
answer long standing questions in the context of two cross-disciplinary applications: the formation and
evolution of interstellar ices and the solid state transition from one crystal structure — polymorph —
to another. The first is important for fundamental questions dealing with the origin of life, specifically
concerning the delivery of molecules—like H2O, CO2 and organic molecules—to habitable planets.
The second application is of great interest to the pharmaceutical industry where polymorph control is
crucial. The polymorphic form controls the solubility of the compound and is therefore key in dose
determination.
The goal of the investigation is to obtain an understanding of mobility in molecular layers on the
molecular level in order to (i) understand the processes in interstellar ices leading to the meeting of two
reactive species, (ii) identify the trapping mechanisms in interstellar ices, (iii) predict which molecules can survive in ices in the harsh environment of star and planet forming regions, (iv) determine which processes are fundamental to polymorphic conversion, and (v) design a way to inhibit or promote polymorphic conversion. I propose to study the mobility in molecular layers This project centers around the investigation of molecular mobility in solid layers by a truly multidisciplinary approach: combining the expertise from crystal growth, astrophysics, and chemistry. We aim to answer long standing questions in the context of two cross-disciplinary applications: the formation and evolution of interstellar ices and the solid state transition from one crystal structure - polymorph -to another. The first is important for fundamental questions dealing with the origin of life, specifically concerning the delivery of molecules -like H2O, CO2 and organic molecules - to habitable planets. The second application is of great interest to the pharmaceutical industry where polymorph control is crucial. The polymorphic form controls the solubility of the compound and is therefore key in dose determination.
The goal of the investigation is to obtain an understanding of mobility in molecular layers on the molecular level in order to (i) understand the processes in interstellar ices leading to the meeting of two reactive species, (ii) identify the trapping mechanisms in interstellar ices, (iii) predict which molecules can survive in ices in the harsh environment of star and planet forming regions, (iv) determine which processes are fundamental to polymorphic conversion, and (v) design a way to inhibit or promote polymorphic conversion. I propose to study the mobility in molecular layers using a combination of simulation techniques. The fundamental difficulty is to cover processes that take place over a large range of timescales: from picoseconds to years. Advances in numerical simulations have only recently made this research possible. Using Molecular Dynamics and Monte Carlo simulations we will study the interactions and processes in molecular layers on different lengthscales and covering a timescale range of roughly 20 orders of magnitude.
This ambitious research project will be carried out in the Institute for Molecules and Materials at the Radboud University in Nijmegen, but will also benefit from existing and new collaborations with local, national and international colleagues.
Max ERC Funding
1 500 000 €
Duration
Start date: 2011-02-01, End date: 2016-01-31
Project acronym MO-TRAYL
Project Mobility trajectories of young lives: Life chances of transnational youths in Global South and North
Researcher (PI) Valentina Mazzucato
Host Institution (HI) UNIVERSITEIT MAASTRICHT
Call Details Consolidator Grant (CoG), SH3, ERC-2015-CoG
Summary The objective of MO-TRAYL is to develop a better understanding of the relationship between migration and young people’s life-chances by studying youth’s mobility trajectories. How the life chances of youths, defined as their educational performance, psychological well-being and transitions into adulthood, are impacted by migration are of relevance for European cities that are faced with a growing youth population with migrant background. At the same time, cities in the Global South, where many migrants in Europe originate from, are faced with large portions of the population of minors who are living without at least one of their parents due to their parent’s migration. There is growing concern in both academia and policy about how these ‘stay-behind’ children are faring. Yet little is known about how migration impacts young people in the Global North and South in the medium-term, in part because our conception of young people’s mobility patterns has to date been overly simplified (either they move once, or they do not). This results in a lack of data that specifically looks at the different mobility patterns of young people and hardly any that has a longitudinal dimension. MO-TRAYL will break new ground by studying simultaneously youths in the Global South who have remained ‘at home’ and those who have migrated to Europe by making use of unique new longitudinal data collected in the Global South as well as collecting new data in the Global North that specifically traces the mobility trajectories, the resulting different family compositions along the way, and how both affect life chances. Through a transnational perspective in which family members and events spanning home and host countries are brought to bear on life chances, MO-TRAYL aims to re-conceptualize youth mobility and families and add a longitudinal dimension to the study of migration and life chance outcomes. The project focuses on Ghanaian children in Ghana, The Netherlands, Belgium and Germany.
Summary
The objective of MO-TRAYL is to develop a better understanding of the relationship between migration and young people’s life-chances by studying youth’s mobility trajectories. How the life chances of youths, defined as their educational performance, psychological well-being and transitions into adulthood, are impacted by migration are of relevance for European cities that are faced with a growing youth population with migrant background. At the same time, cities in the Global South, where many migrants in Europe originate from, are faced with large portions of the population of minors who are living without at least one of their parents due to their parent’s migration. There is growing concern in both academia and policy about how these ‘stay-behind’ children are faring. Yet little is known about how migration impacts young people in the Global North and South in the medium-term, in part because our conception of young people’s mobility patterns has to date been overly simplified (either they move once, or they do not). This results in a lack of data that specifically looks at the different mobility patterns of young people and hardly any that has a longitudinal dimension. MO-TRAYL will break new ground by studying simultaneously youths in the Global South who have remained ‘at home’ and those who have migrated to Europe by making use of unique new longitudinal data collected in the Global South as well as collecting new data in the Global North that specifically traces the mobility trajectories, the resulting different family compositions along the way, and how both affect life chances. Through a transnational perspective in which family members and events spanning home and host countries are brought to bear on life chances, MO-TRAYL aims to re-conceptualize youth mobility and families and add a longitudinal dimension to the study of migration and life chance outcomes. The project focuses on Ghanaian children in Ghana, The Netherlands, Belgium and Germany.
Max ERC Funding
1 937 500 €
Duration
Start date: 2017-01-01, End date: 2021-12-31
Project acronym NANOCAT
Project Catalysis at the Nanoscale
Researcher (PI) Johannes Albertus Antonius Wilhemus Elemans
Host Institution (HI) STICHTING KATHOLIEKE UNIVERSITEIT
Call Details Starting Grant (StG), PE4, ERC-2010-StG_20091028
Summary Is it possible to really 'see' individual molecules in action as they are involved in a chemical reaction at a surface? And can we, in this way, get a complete understanding of reaction mechanisms, at the resolution of atoms? The importance of studying chemical reactions at surfaces has recently been highlighted by Gerhard Ertl being awarded the Nobel Prize in chemistry in 2007, for elucidating mechanisms of chemical processes on heterogeneous catalysts at the single molecule level with Scanning Tunneling Microscopy (STM). Although ground-breaking, these studies were carried out in ultra-high vacuum, which is, however, an unrealistic condition for conventional chemical or biological reactions which usually occur in a liquid medium. The aim of this ERC proposal is to establish a research area at the interface of chemistry and physics which has so far been nearly completely unexplored: the investigation of chemical reactions at solid-liquid interfaces at the highest detail possible, by visualizing molecules with STM while they are involved in a reaction. By doing so, unique information about reaction mechanisms can be obtained by looking at individual molecules, instead of ensembles where the behaviour of many molecules is averaged.
Towards this goal I propose to use a newly developed catalysis-STM setup, which is equipped with a liquid-cell and a bell-jar, and in which the conditions that are commonly applied in chemical laboratory processes (e.g. addition and withdrawal of chemicals, working under different atmospheres) can be closely resembled. In this setup I intend to carry out chemical reactions at a surface and monitor the behaviour of individual adsorbed catalysts, while they are in action. More specifically, it is my aim to investigate in detail the relation between structure and reactivity at the nanoscale
Summary
Is it possible to really 'see' individual molecules in action as they are involved in a chemical reaction at a surface? And can we, in this way, get a complete understanding of reaction mechanisms, at the resolution of atoms? The importance of studying chemical reactions at surfaces has recently been highlighted by Gerhard Ertl being awarded the Nobel Prize in chemistry in 2007, for elucidating mechanisms of chemical processes on heterogeneous catalysts at the single molecule level with Scanning Tunneling Microscopy (STM). Although ground-breaking, these studies were carried out in ultra-high vacuum, which is, however, an unrealistic condition for conventional chemical or biological reactions which usually occur in a liquid medium. The aim of this ERC proposal is to establish a research area at the interface of chemistry and physics which has so far been nearly completely unexplored: the investigation of chemical reactions at solid-liquid interfaces at the highest detail possible, by visualizing molecules with STM while they are involved in a reaction. By doing so, unique information about reaction mechanisms can be obtained by looking at individual molecules, instead of ensembles where the behaviour of many molecules is averaged.
Towards this goal I propose to use a newly developed catalysis-STM setup, which is equipped with a liquid-cell and a bell-jar, and in which the conditions that are commonly applied in chemical laboratory processes (e.g. addition and withdrawal of chemicals, working under different atmospheres) can be closely resembled. In this setup I intend to carry out chemical reactions at a surface and monitor the behaviour of individual adsorbed catalysts, while they are in action. More specifically, it is my aim to investigate in detail the relation between structure and reactivity at the nanoscale
Max ERC Funding
1 500 000 €
Duration
Start date: 2010-09-01, End date: 2015-08-31
Project acronym PHOTPROT
Project The Dynamic Protein Matrix in Photosynthesis: From Disorder to Life
Researcher (PI) Rienk Van Grondelle
Host Institution (HI) STICHTING VU
Call Details Advanced Grant (AdG), PE4, ERC-2010-AdG_20100224
Summary In photosynthesis solar light is harvested by an antenna, the energy is transferred to the photosynthetic reaction center where a charge separation occurs. These processes occur on an ultrafast timescale and result in a stable product. The photosynthetic apparatus consists of a complex set of pigment-proteins that perform these delicate processes with a quantum efficiency close to 1. Proteins are intrinsically disordered and display dynamics over a fast range oof times, from femtoseconds to seconds. In this proposal I wish to explore how this dynamic protein matrix facilitates or maybe even drives the primary events of photosynthesis. Together with my co-investigator Bruno Robert I plan to investigate four aspects of how the protein matrix may affect this important biological process. In the first project we will study if the charge separation in Photosystem 2 occurs along multiple pathways, depending on the realization of the disorder. Project 2 concerns the possible role of quantum coherence in charge separation in Photosystem 2. In project 3 we will investigate how the dynamic protein matrix maybe even actively stabilizes the early charge separation. Project 4 aims to find out how functional transitions in photosynthetic proteins are coupled to conformational changes. The latter relates to the idea that the peripheral light-harvesting complex of plants, LHCII, plays a role in photoprotection by switching between a light-harvesting state and a quenching state. The project combines a number of state-of-the-art biophysical approaches and furthermore aims to develop new techniques: 2-dimensional electronic spectroscopy and plasmon wave resonance spectroscopy. The final result will deliver a unique view on how the physics of protein matter manifests itself in biology.
Summary
In photosynthesis solar light is harvested by an antenna, the energy is transferred to the photosynthetic reaction center where a charge separation occurs. These processes occur on an ultrafast timescale and result in a stable product. The photosynthetic apparatus consists of a complex set of pigment-proteins that perform these delicate processes with a quantum efficiency close to 1. Proteins are intrinsically disordered and display dynamics over a fast range oof times, from femtoseconds to seconds. In this proposal I wish to explore how this dynamic protein matrix facilitates or maybe even drives the primary events of photosynthesis. Together with my co-investigator Bruno Robert I plan to investigate four aspects of how the protein matrix may affect this important biological process. In the first project we will study if the charge separation in Photosystem 2 occurs along multiple pathways, depending on the realization of the disorder. Project 2 concerns the possible role of quantum coherence in charge separation in Photosystem 2. In project 3 we will investigate how the dynamic protein matrix maybe even actively stabilizes the early charge separation. Project 4 aims to find out how functional transitions in photosynthetic proteins are coupled to conformational changes. The latter relates to the idea that the peripheral light-harvesting complex of plants, LHCII, plays a role in photoprotection by switching between a light-harvesting state and a quenching state. The project combines a number of state-of-the-art biophysical approaches and furthermore aims to develop new techniques: 2-dimensional electronic spectroscopy and plasmon wave resonance spectroscopy. The final result will deliver a unique view on how the physics of protein matter manifests itself in biology.
Max ERC Funding
2 864 400 €
Duration
Start date: 2011-02-01, End date: 2017-01-31
Project acronym PROWAT
Project Proton conduction in structured water
Researcher (PI) Huib BAKKER
Host Institution (HI) STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN
Call Details Advanced Grant (AdG), PE4, ERC-2015-AdG
Summary In recent years water near surfaces and solutes has been observed to be differently structured and to show slower reorientation and hydrogen-bond dynamics than in bulk. Aqueous proton transfer is a process that strongly relies on the structure and dynamics of the hydrogen-bond network of liquid water and that often occurs near surfaces. Examples are thylakoid and mitochondrial membranes and the nanochannels of transmembrane proteins and fuel cells. An important but experimentally largely unexplored area of research is how the rate and mechanism of aqueous proton transfer change due to the surface-induced structuring of the water medium. Theoretical work showed that the structuring and nano-confinement of water can have a strong effect on the proton mobility. Recently, experimental techniques have been developed that are capable of probing the structural dynamics of water molecules and proton-hydration structures near surfaces. These techniques include heterodyne detected sum-frequency generation (HD-SFG) and two-dimensional HD-SFG (2D-HD-VSFG).
I propose to use these and other advanced spectroscopic techniques to study the rate and molecular mechanisms of proton transfer through structured aqueous media. These systems include aqueous solutions of different solutes, water near extended surfaces like graphene and electrically switchable monolayers, and the aqueous nanochannels of metal-organic frameworks. These studies will provide a fundamental understanding of the molecular mechanisms of aqueous proton transfer in natural and man-made (bio)molecular systems, and can lead to the development of new proton-conducting membranes and nanochannels with applications in fuel cells. The obtained knowledge can also lead to new strategies to control proton mobility, e.g. by electrical switching of the properties of the water network at surfaces and in nanochannels, i.e. to field-effect proton transistors.
Summary
In recent years water near surfaces and solutes has been observed to be differently structured and to show slower reorientation and hydrogen-bond dynamics than in bulk. Aqueous proton transfer is a process that strongly relies on the structure and dynamics of the hydrogen-bond network of liquid water and that often occurs near surfaces. Examples are thylakoid and mitochondrial membranes and the nanochannels of transmembrane proteins and fuel cells. An important but experimentally largely unexplored area of research is how the rate and mechanism of aqueous proton transfer change due to the surface-induced structuring of the water medium. Theoretical work showed that the structuring and nano-confinement of water can have a strong effect on the proton mobility. Recently, experimental techniques have been developed that are capable of probing the structural dynamics of water molecules and proton-hydration structures near surfaces. These techniques include heterodyne detected sum-frequency generation (HD-SFG) and two-dimensional HD-SFG (2D-HD-VSFG).
I propose to use these and other advanced spectroscopic techniques to study the rate and molecular mechanisms of proton transfer through structured aqueous media. These systems include aqueous solutions of different solutes, water near extended surfaces like graphene and electrically switchable monolayers, and the aqueous nanochannels of metal-organic frameworks. These studies will provide a fundamental understanding of the molecular mechanisms of aqueous proton transfer in natural and man-made (bio)molecular systems, and can lead to the development of new proton-conducting membranes and nanochannels with applications in fuel cells. The obtained knowledge can also lead to new strategies to control proton mobility, e.g. by electrical switching of the properties of the water network at surfaces and in nanochannels, i.e. to field-effect proton transistors.
Max ERC Funding
2 495 000 €
Duration
Start date: 2016-10-01, End date: 2021-09-30
Project acronym SCIFRI
Project Science Friction
Researcher (PI) Joost Wilhelmus Maria Frenken
Host Institution (HI) STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN
Call Details Advanced Grant (AdG), PE4, ERC-2010-AdG_20100224
Summary "There is no fundamental law that dictates the necessity of losing energy in a sliding contact. In spite of its apparent simplicity, we have a relatively poor understanding of the mechanisms that determine how energy is lost when two bodies are forced to slide over one another. The SciFri project will launch a research attack on friction that will not only deepen our fundamental insight into this important phenomenon but also involves the development of several strategies to significantly lower or ‘lose’ friction under practical circumstances.
"" We will address in detail how energy is really dissipated on the atomic scale when sliding objects slip over a single lattice spacing.
"" We will bring friction to a halt by employing two mechanisms that we have explored recently on the atomic scale: superlubricity and thermolubricity.
"" Scaling up the two friction-lowering effects to the macro-scale will be attempted by a combination of two completely novel approaches. One is the use of special coatings, namely single monolayers of graphene or hexagonal boron nitride. The other involves a specific nanopatterning of the contacting surfaces.
"" In our friction experiments and modeling we will cover the full range of length scales, from the atomic regime all the way to the practical scale of so-called MEMS devices. This will prove to be an essential element in the extrapolation of nanoscale behavior to friction on a practical level. We will further compare measurements in uncompromised (ultrahigh) vacuum with observations under controlled ambient conditions, in order to explore the role of the atmosphere."
Summary
"There is no fundamental law that dictates the necessity of losing energy in a sliding contact. In spite of its apparent simplicity, we have a relatively poor understanding of the mechanisms that determine how energy is lost when two bodies are forced to slide over one another. The SciFri project will launch a research attack on friction that will not only deepen our fundamental insight into this important phenomenon but also involves the development of several strategies to significantly lower or ‘lose’ friction under practical circumstances.
"" We will address in detail how energy is really dissipated on the atomic scale when sliding objects slip over a single lattice spacing.
"" We will bring friction to a halt by employing two mechanisms that we have explored recently on the atomic scale: superlubricity and thermolubricity.
"" Scaling up the two friction-lowering effects to the macro-scale will be attempted by a combination of two completely novel approaches. One is the use of special coatings, namely single monolayers of graphene or hexagonal boron nitride. The other involves a specific nanopatterning of the contacting surfaces.
"" In our friction experiments and modeling we will cover the full range of length scales, from the atomic regime all the way to the practical scale of so-called MEMS devices. This will prove to be an essential element in the extrapolation of nanoscale behavior to friction on a practical level. We will further compare measurements in uncompromised (ultrahigh) vacuum with observations under controlled ambient conditions, in order to explore the role of the atmosphere."
Max ERC Funding
2 494 000 €
Duration
Start date: 2011-07-01, End date: 2016-06-30
Project acronym STAMP
Project Separation Technology for A Million Peaks
Researcher (PI) Petrus Johannes SCHOENMAKERS
Host Institution (HI) UNIVERSITEIT VAN AMSTERDAM
Call Details Advanced Grant (AdG), PE4, ERC-2015-AdG
Summary Extremely high separation powers are required to fully characterize complex mixtures that are of crucial importance in many fields, such as life science (including systems biology), food science, renewable energy sources and feedstocks, and high-tech materials. The STAMP project is aimed at obtaining a peak capacity of one million in liquid-phase analytical separations. Spatial three-dimensional liquid chromatography will be used to achieve this goal. The major advantage of this technique is that all second-dimension separations and – in a next step – all third-dimension separations are performed in parallel. This allows high-resolution separations to be performed in each dimension, while the total analysis time remains reasonable. Optical and mass-spectrometric imaging techniques are envisaged as detection methods after printing (STAMPing) the effluent from the 3D separation body on a suitable substrate. The STAMP project also has a number of sub-targets that will bring additional significant benefits to all the above application fields.
The target and the sub-targets of the STAMP project may be summarized as follows.
• Separations with a peak capacity of 1,000,000 (through the use of spatial 3D-LC)
• Fast and efficient spatial 2D-LC separations
• Devices for spatial 2D-LC and 3D-LC
• Detection principles for spatial 2D-LC and 3D-LC
• Suitable stationary-phase materials and mechanisms for orthogonal 2D and 3D separations
• Relevant applications of all of the above in various fields of science.
Summary
Extremely high separation powers are required to fully characterize complex mixtures that are of crucial importance in many fields, such as life science (including systems biology), food science, renewable energy sources and feedstocks, and high-tech materials. The STAMP project is aimed at obtaining a peak capacity of one million in liquid-phase analytical separations. Spatial three-dimensional liquid chromatography will be used to achieve this goal. The major advantage of this technique is that all second-dimension separations and – in a next step – all third-dimension separations are performed in parallel. This allows high-resolution separations to be performed in each dimension, while the total analysis time remains reasonable. Optical and mass-spectrometric imaging techniques are envisaged as detection methods after printing (STAMPing) the effluent from the 3D separation body on a suitable substrate. The STAMP project also has a number of sub-targets that will bring additional significant benefits to all the above application fields.
The target and the sub-targets of the STAMP project may be summarized as follows.
• Separations with a peak capacity of 1,000,000 (through the use of spatial 3D-LC)
• Fast and efficient spatial 2D-LC separations
• Devices for spatial 2D-LC and 3D-LC
• Detection principles for spatial 2D-LC and 3D-LC
• Suitable stationary-phase materials and mechanisms for orthogonal 2D and 3D separations
• Relevant applications of all of the above in various fields of science.
Max ERC Funding
2 499 780 €
Duration
Start date: 2016-09-01, End date: 2021-08-31
Project acronym SUPRANANO
Project From metal nanocrystal to supracrystal:
crystallinity at nanometer and micrometer scales
Researcher (PI) Marie-Paule Pileni
Host Institution (HI) UNIVERSITE PIERRE ET MARIE CURIE - PARIS 6
Call Details Advanced Grant (AdG), PE4, ERC-2010-AdG_20100224
Summary The Applicant has an outstanding record of achievement and an international reputation for independent research in many areas of physical chemistry and more specifically over the last 25 years in nanosciences. This large expertise makes it possible, through this project, to come to a decisive turning point in her career. This high-impact and challenging proposal brings together innovative ideas in nanomaterials within a single inter- and multi-disciplinary project to open up new horizons across materials science. The challenging and innovating issue of this project consists in authenticating and detailing the emergence of new chemical and physical properties directly related to the ordering of atoms in nanocrystals (nanocrystallinity) and the ordering of nanocrystals in supracrystals (supracrystallinity). Au, Ag, and Co nanocrystals with different nanocrystallinities (single domain, multiply-twinned and polycrystalline particles) will be synthesized by new methods. Nanocrystals will be used to produce supracrystals of these metals with different supracrystallinities (fcc, hcp, or bcc). The influence of nanocrystallinity on the diffusivity of different atoms within Ag and Co nanocrystals will be investigated. Physical properties of both nanocrystals and supracrystals such as the vibrational, electronic and mechanical properties and their dependence on crystallinity will be explored. From the data thus obtained it should be possible to point out analogies between the properties of atoms in nanocrystals or in the bulk phase and those of nanocrystals ordered in supracrystals. Moreover, correlations between the studied properties could emerge. This research will result in important scientific knowledge and may ultimately open new technological applications.
Summary
The Applicant has an outstanding record of achievement and an international reputation for independent research in many areas of physical chemistry and more specifically over the last 25 years in nanosciences. This large expertise makes it possible, through this project, to come to a decisive turning point in her career. This high-impact and challenging proposal brings together innovative ideas in nanomaterials within a single inter- and multi-disciplinary project to open up new horizons across materials science. The challenging and innovating issue of this project consists in authenticating and detailing the emergence of new chemical and physical properties directly related to the ordering of atoms in nanocrystals (nanocrystallinity) and the ordering of nanocrystals in supracrystals (supracrystallinity). Au, Ag, and Co nanocrystals with different nanocrystallinities (single domain, multiply-twinned and polycrystalline particles) will be synthesized by new methods. Nanocrystals will be used to produce supracrystals of these metals with different supracrystallinities (fcc, hcp, or bcc). The influence of nanocrystallinity on the diffusivity of different atoms within Ag and Co nanocrystals will be investigated. Physical properties of both nanocrystals and supracrystals such as the vibrational, electronic and mechanical properties and their dependence on crystallinity will be explored. From the data thus obtained it should be possible to point out analogies between the properties of atoms in nanocrystals or in the bulk phase and those of nanocrystals ordered in supracrystals. Moreover, correlations between the studied properties could emerge. This research will result in important scientific knowledge and may ultimately open new technological applications.
Max ERC Funding
2 133 990 €
Duration
Start date: 2011-01-01, End date: 2016-06-30
Project acronym THERMOS
Project The protein thermostability: same activity, different working temperature. A water problem? A rigidity/flexibility trade-off?
Researcher (PI) Fabio Sterpone
Host Institution (HI) CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
Call Details Starting Grant (StG), PE4, ERC-2010-StG_20091028
Summary The proteins from thermophilic organisms are the objects of the present study. Here it is specifically proposed a study on the microscopic origin of proteins thermostability using a multi-computational approach. The multi-methodological strategy is a powerful tool for exploring this issue since it allows an investigation at many different levels of molecular details. Neutron Scattering experiments will complement the in silico investigation.
The present study will tackle the issue of thermostability under a new light by explicitly focusing on the role of hydration water and by carefully selecting homologues proteins from mesophilic, thermophilic and hyperthermophilic organisms as cases of study.
I will investigate how the chemical composition of a protein surface, the distribution of charged, polar and hydrophobic amino acids, could be tuned in order to increase/reduce thermal resistance of the hydration layer and of the protein matrix. I will examine whether thermostability correlates to the flexibility or the rigidity of the protein matrix and/or of its hydration skin. I will study in details how the catalytic activity of enzymes is affected by the dynamics of the protein at extreme temperatures.
The theoretical study will be supported by Neutron Scattering experiments gaining key knowledge on the structure and dynamics of hydration water and on the dynamics of proteins in the nanosecond time scale.
Nowadays the possibility to design functional thermostable proteins is strategic for expanding the use of enzymes in industrial processes and in biotechnology. The study of the coupling between hydration water and protein surface could pave the way for the computer-aided engineering of thermostable proteins.
Summary
The proteins from thermophilic organisms are the objects of the present study. Here it is specifically proposed a study on the microscopic origin of proteins thermostability using a multi-computational approach. The multi-methodological strategy is a powerful tool for exploring this issue since it allows an investigation at many different levels of molecular details. Neutron Scattering experiments will complement the in silico investigation.
The present study will tackle the issue of thermostability under a new light by explicitly focusing on the role of hydration water and by carefully selecting homologues proteins from mesophilic, thermophilic and hyperthermophilic organisms as cases of study.
I will investigate how the chemical composition of a protein surface, the distribution of charged, polar and hydrophobic amino acids, could be tuned in order to increase/reduce thermal resistance of the hydration layer and of the protein matrix. I will examine whether thermostability correlates to the flexibility or the rigidity of the protein matrix and/or of its hydration skin. I will study in details how the catalytic activity of enzymes is affected by the dynamics of the protein at extreme temperatures.
The theoretical study will be supported by Neutron Scattering experiments gaining key knowledge on the structure and dynamics of hydration water and on the dynamics of proteins in the nanosecond time scale.
Nowadays the possibility to design functional thermostable proteins is strategic for expanding the use of enzymes in industrial processes and in biotechnology. The study of the coupling between hydration water and protein surface could pave the way for the computer-aided engineering of thermostable proteins.
Max ERC Funding
1 225 000 €
Duration
Start date: 2011-05-01, End date: 2016-04-30
Project acronym ULT-MAS-DNP
Project Dynamic Nuclear Polarization at ultra-fast sample spinning and ultra-low temperature
Researcher (PI) Gaël De Paëpe
Host Institution (HI) COMMISSARIAT A L ENERGIE ATOMIQUE ET AUX ENERGIES ALTERNATIVES
Call Details Consolidator Grant (CoG), PE4, ERC-2015-CoG
Summary The goal of the project is to develop a new hyperpolarization approach called Magic Angle Spinning Dynamic Nuclear Polarization (MAS-DNP) to reach levels of sensitivity and resolution that have never been achieved, in order to tackle highly relevant chemical and biological questions that remain unanswered so far. Firstly this will provide major advances in NMR crystallography (solving 3D structures by NMR) by showing that distance measurements between nuclei (13C, 15N, etc.) as well as 17O quadrupolar parameters can be extracted from NMR measurements without requiring isotopic labeling. This will be applied to systems that cannot be easily isotopically enriched and for which X-ray analysis is often not suitable. Secondly we propose an innovative strategy to hyperpolarize nuclear spins using MAS-DNP: rather than polarizing the entire system uniformly, we will selectively “light up” regions where we wish to gather important structural information. This will be developed to study protein-ligand interactions (with unprecedented resolution) to answer specific structural questions and potentially impact the field of drug engineering. Finally we will show that the unique experimental setup developed in this project will open up NMR to the routine study of “exotic”, yet ubiquitous and highly informative, nuclei such as 43Ca and 67Zn. Specifically, we will show that MAS-DNP can become a choice technique for the study of diamagnetic metal binding sites, complementing EPR for the study of metalloproteins. These goals will be achieved thanks to the development of original methods and advanced instrumentation, allowing sustainable access to low temperatures (down to 10-20 K) and fast pneumatic sample spinning, under microwave irradiation. We expect to improve the current sensitivity to such an extent that 4 orders of magnitude of experimental timesavings are obtained, resulting in completely new research directions and regimes.
Summary
The goal of the project is to develop a new hyperpolarization approach called Magic Angle Spinning Dynamic Nuclear Polarization (MAS-DNP) to reach levels of sensitivity and resolution that have never been achieved, in order to tackle highly relevant chemical and biological questions that remain unanswered so far. Firstly this will provide major advances in NMR crystallography (solving 3D structures by NMR) by showing that distance measurements between nuclei (13C, 15N, etc.) as well as 17O quadrupolar parameters can be extracted from NMR measurements without requiring isotopic labeling. This will be applied to systems that cannot be easily isotopically enriched and for which X-ray analysis is often not suitable. Secondly we propose an innovative strategy to hyperpolarize nuclear spins using MAS-DNP: rather than polarizing the entire system uniformly, we will selectively “light up” regions where we wish to gather important structural information. This will be developed to study protein-ligand interactions (with unprecedented resolution) to answer specific structural questions and potentially impact the field of drug engineering. Finally we will show that the unique experimental setup developed in this project will open up NMR to the routine study of “exotic”, yet ubiquitous and highly informative, nuclei such as 43Ca and 67Zn. Specifically, we will show that MAS-DNP can become a choice technique for the study of diamagnetic metal binding sites, complementing EPR for the study of metalloproteins. These goals will be achieved thanks to the development of original methods and advanced instrumentation, allowing sustainable access to low temperatures (down to 10-20 K) and fast pneumatic sample spinning, under microwave irradiation. We expect to improve the current sensitivity to such an extent that 4 orders of magnitude of experimental timesavings are obtained, resulting in completely new research directions and regimes.
Max ERC Funding
1 999 805 €
Duration
Start date: 2016-07-01, End date: 2021-06-30
Project acronym UMnD
Project Urban modelling in higher dimensions: embedding generalisation of 3D data in a 4D model
Researcher (PI) Jantine Esther Stoter
Host Institution (HI) TECHNISCHE UNIVERSITEIT DELFT
Call Details Starting Grant (StG), SH3, ERC-2015-STG
Summary Geographic data about urban objects (buildings, roads) is needed to monitor and control processes within modern urban areas (noise, flooding, energy demand-supply). As these processes occur in 3D, urban applications require 3D data and each application requires its own specific semantic and geometric Level of Detail (LoD) of the 3D data.
The scientific challenge of this project is that it requires enormous efforts to collect and transform 3D data to make it suitable for a specific application. Urban applications are therefore forced to work mainly in 2D. This reduction causes the loss of important information. A solution is needed to support the reuse of once collected 3D data in multiple applications.
I will develop a fundamental solution for providing 3D data at application specific LoDs to solve the current problem of independently acquired and stored LoDs of a 3D urban model. To enforce consistency across dimensions, the LoDs will be modelled as an extra dimension to the 3D spatial dimensions in an integrated 3D+LoD (4D) model. I will use an innovative method that goes far beyond the state-of-the-art by introducing higher dimensional (nD) mathematical models to the well-established domain of cartographic generalisation in 2D. Furthermore, I will study 3D generalisation solutions to derive coarse from fine data and embed these in the 4D model. “Slicing” operations will be developed that reduce the dimensions of the 4D data to generate error-free 3D data at application specific LoDs.
LoD is strongly related to map scale, a well-known concept in GIS. However, modelling it as an extra dimension of geographic data is new. In addition, the intermediate results have the potential to advance the field of geo-information technology, such as the ground-breaking extension of the 2D cartographic generalisation domain to 3D. If successful, the 4D approach opens a new horizon for modelling parametrisable aspects of urban environments, which may establish a new research line.
Summary
Geographic data about urban objects (buildings, roads) is needed to monitor and control processes within modern urban areas (noise, flooding, energy demand-supply). As these processes occur in 3D, urban applications require 3D data and each application requires its own specific semantic and geometric Level of Detail (LoD) of the 3D data.
The scientific challenge of this project is that it requires enormous efforts to collect and transform 3D data to make it suitable for a specific application. Urban applications are therefore forced to work mainly in 2D. This reduction causes the loss of important information. A solution is needed to support the reuse of once collected 3D data in multiple applications.
I will develop a fundamental solution for providing 3D data at application specific LoDs to solve the current problem of independently acquired and stored LoDs of a 3D urban model. To enforce consistency across dimensions, the LoDs will be modelled as an extra dimension to the 3D spatial dimensions in an integrated 3D+LoD (4D) model. I will use an innovative method that goes far beyond the state-of-the-art by introducing higher dimensional (nD) mathematical models to the well-established domain of cartographic generalisation in 2D. Furthermore, I will study 3D generalisation solutions to derive coarse from fine data and embed these in the 4D model. “Slicing” operations will be developed that reduce the dimensions of the 4D data to generate error-free 3D data at application specific LoDs.
LoD is strongly related to map scale, a well-known concept in GIS. However, modelling it as an extra dimension of geographic data is new. In addition, the intermediate results have the potential to advance the field of geo-information technology, such as the ground-breaking extension of the 2D cartographic generalisation domain to 3D. If successful, the 4D approach opens a new horizon for modelling parametrisable aspects of urban environments, which may establish a new research line.
Max ERC Funding
1 498 148 €
Duration
Start date: 2016-09-01, End date: 2021-08-31