Project acronym AFRIVAL
Project African river basins: catchment-scale carbon fluxes and transformations
Researcher (PI) Steven Bouillon
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Country Belgium
Call Details Starting Grant (StG), PE10, ERC-2009-StG
Summary This proposal wishes to fundamentally improve our understanding of the role of tropical freshwater ecosystems in carbon (C) cycling on the catchment scale. It uses an unprecedented combination of state-of-the-art proxies such as stable isotope, 14C and biomarker signatures to characterize organic matter, radiogenic isotope signatures to determine particle residence times, as well as field measurements of relevant biogeochemical processes. We focus on tropical systems since there is a striking lack of data on such systems, even though riverine C transport is thought to be disproportionately high in tropical areas. Furthermore, the presence of landscape-scale contrasts in vegetation (in particular, C3 vs. C4 plants) are an important asset in the use of stable isotopes as natural tracers of C cycling processes on this scale. Freshwater ecosystems are an important component in the global C cycle, and the primary link between terrestrial and marine ecosystems. Recent estimates indicate that ~2 Pg C y-1 (Pg=Petagram) enter freshwater systems, i.e., about twice the estimated global terrestrial C sink. More than half of this is thought to be remineralized before it reaches the coastal zone, and for the Amazon basin this has even been suggested to be ~90% of the lateral C inputs. The question how general these patterns are is a matter of debate, and assessing the mechanisms determining the degree of processing versus transport of organic carbon in lakes and river systems is critical to further constrain their role in the global C cycle. This proposal provides an interdisciplinary approach to describe and quantify catchment-scale C transport and cycling in tropical river basins. Besides conceptual and methodological advances, and a significant expansion of our dataset on C processes in such systems, new data gathered in this project are likely to provide exciting and novel hypotheses on the functioning of freshwater systems and their linkage to the terrestrial C budget.
Summary
This proposal wishes to fundamentally improve our understanding of the role of tropical freshwater ecosystems in carbon (C) cycling on the catchment scale. It uses an unprecedented combination of state-of-the-art proxies such as stable isotope, 14C and biomarker signatures to characterize organic matter, radiogenic isotope signatures to determine particle residence times, as well as field measurements of relevant biogeochemical processes. We focus on tropical systems since there is a striking lack of data on such systems, even though riverine C transport is thought to be disproportionately high in tropical areas. Furthermore, the presence of landscape-scale contrasts in vegetation (in particular, C3 vs. C4 plants) are an important asset in the use of stable isotopes as natural tracers of C cycling processes on this scale. Freshwater ecosystems are an important component in the global C cycle, and the primary link between terrestrial and marine ecosystems. Recent estimates indicate that ~2 Pg C y-1 (Pg=Petagram) enter freshwater systems, i.e., about twice the estimated global terrestrial C sink. More than half of this is thought to be remineralized before it reaches the coastal zone, and for the Amazon basin this has even been suggested to be ~90% of the lateral C inputs. The question how general these patterns are is a matter of debate, and assessing the mechanisms determining the degree of processing versus transport of organic carbon in lakes and river systems is critical to further constrain their role in the global C cycle. This proposal provides an interdisciplinary approach to describe and quantify catchment-scale C transport and cycling in tropical river basins. Besides conceptual and methodological advances, and a significant expansion of our dataset on C processes in such systems, new data gathered in this project are likely to provide exciting and novel hypotheses on the functioning of freshwater systems and their linkage to the terrestrial C budget.
Max ERC Funding
1 745 262 €
Duration
Start date: 2009-10-01, End date: 2014-09-30
Project acronym BEAUTY
Project Towards a comparative sociology of beauty The transnational modelling industry and the social shaping of beauty standards in six European countries
Researcher (PI) Giselinde Maniouschka Marije Kuipers
Host Institution (HI) UNIVERSITEIT VAN AMSTERDAM
Country Netherlands
Call Details Starting Grant (StG), SH2, ERC-2009-StG
Summary This project studies how beauty standards - perceptions of physical beauty in women and men - are socially shaped. It will focus on the transnational modelling industry, an institution centrally concerned with the production and dissemination of beauty standards. The project aims to develop a comparative sociology of beauty. By comparing beauty standards both within and across nations, it will identify central mechanisms and institutions through which such standards are developed and disseminated. In 4 subprojects this study investigates 1. How standards of female and male beauty are perceived, shaped, and disseminated by professionals in the transnational modelling field; 2. How female and male models perceive, represent and embody beauty standards in their work; 3. How female and male beauty has been portrayed by models in mainstream and high fashion magazines from 1980 till 2010; 4. How people of different backgrounds perceive female and male beauty, and how their beauty standards are related to the images disseminated in modelling. Each project will be done in France, Italy, the Netherlands, Poland, Turkey and the UK. This project is innovative in several ways. It is the first comprehensive study of the social shaping of beauty standards. The 4 subprojects will result in an extensive account of production, products, and reception of a contested cultural industry. Moreover, this project draws together in novel ways theories about media, cultural production and taste formation; gender and the body; and globalization. The project will make a major contribution to the study of globalization: it studies a transnational cultural industry, and its comparative and longitudinal design allows us to gauge the impact of globalization in different contexts. Finally, the project is innovative in its comparative, multi-method research design, in which the subprojects will follow the entire process of production and consumption in a transnational field.
Summary
This project studies how beauty standards - perceptions of physical beauty in women and men - are socially shaped. It will focus on the transnational modelling industry, an institution centrally concerned with the production and dissemination of beauty standards. The project aims to develop a comparative sociology of beauty. By comparing beauty standards both within and across nations, it will identify central mechanisms and institutions through which such standards are developed and disseminated. In 4 subprojects this study investigates 1. How standards of female and male beauty are perceived, shaped, and disseminated by professionals in the transnational modelling field; 2. How female and male models perceive, represent and embody beauty standards in their work; 3. How female and male beauty has been portrayed by models in mainstream and high fashion magazines from 1980 till 2010; 4. How people of different backgrounds perceive female and male beauty, and how their beauty standards are related to the images disseminated in modelling. Each project will be done in France, Italy, the Netherlands, Poland, Turkey and the UK. This project is innovative in several ways. It is the first comprehensive study of the social shaping of beauty standards. The 4 subprojects will result in an extensive account of production, products, and reception of a contested cultural industry. Moreover, this project draws together in novel ways theories about media, cultural production and taste formation; gender and the body; and globalization. The project will make a major contribution to the study of globalization: it studies a transnational cultural industry, and its comparative and longitudinal design allows us to gauge the impact of globalization in different contexts. Finally, the project is innovative in its comparative, multi-method research design, in which the subprojects will follow the entire process of production and consumption in a transnational field.
Max ERC Funding
1 202 611 €
Duration
Start date: 2010-05-01, End date: 2015-08-31
Project acronym BOYS WILL BE BOYS?
Project Boys will be boys? Gender differences in the socialization of disruptive behaviour in early childhood
Researcher (PI) Judit Mesman
Host Institution (HI) UNIVERSITEIT LEIDEN
Country Netherlands
Call Details Starting Grant (StG), SH4, ERC-2009-StG
Summary The aim of the proposed project is to shed light on early childhood gender-differentiated socialization and gender-specific susceptibility to parenting within families in relation to disruptive behaviour in boys and girls in the first four years of life. The popular saying boys will be boys refers to the observation that boys show more disruptive behaviours (e.g., noncompliance or aggression) than girls, a pattern that has been confirmed frequently in scientific research. There is also evidence that parents treat boys differently from girls in ways that are likely to foster boys disruptive behaviour, and that boys are more susceptible to problematic family functioning than girls. The crucial question is whether gender differences in socialization, susceptibility to socialization, and children s behavioural outcomes are also salient when the same parents are doing the parenting of both a boy and a girl. Within-family comparisons are necessary to account for structural differences between families. To this end, families with two children born 22-26 months apart will be recruited from the general population. To account for birth order and gender-combination effects, the sample includes four groups of 150 families each, with the following sibling combinations: girl-boy, boy-girl, girl-girl, and boy-boy. The study has a four-wave longitudinal design, based on the youngest sibling with assessments at ages 12, 24, 36, and 48 months, because gender differences in disruptive behaviour develop during the toddler years. Each assessment consists of two home visits: one with mother and one with father, including observations of both children and of the children separately. Parenting behaviours will be studied in reaction to specific child behaviours, including aggression, noncompliance, and prosocial behaviours.
Summary
The aim of the proposed project is to shed light on early childhood gender-differentiated socialization and gender-specific susceptibility to parenting within families in relation to disruptive behaviour in boys and girls in the first four years of life. The popular saying boys will be boys refers to the observation that boys show more disruptive behaviours (e.g., noncompliance or aggression) than girls, a pattern that has been confirmed frequently in scientific research. There is also evidence that parents treat boys differently from girls in ways that are likely to foster boys disruptive behaviour, and that boys are more susceptible to problematic family functioning than girls. The crucial question is whether gender differences in socialization, susceptibility to socialization, and children s behavioural outcomes are also salient when the same parents are doing the parenting of both a boy and a girl. Within-family comparisons are necessary to account for structural differences between families. To this end, families with two children born 22-26 months apart will be recruited from the general population. To account for birth order and gender-combination effects, the sample includes four groups of 150 families each, with the following sibling combinations: girl-boy, boy-girl, girl-girl, and boy-boy. The study has a four-wave longitudinal design, based on the youngest sibling with assessments at ages 12, 24, 36, and 48 months, because gender differences in disruptive behaviour develop during the toddler years. Each assessment consists of two home visits: one with mother and one with father, including observations of both children and of the children separately. Parenting behaviours will be studied in reaction to specific child behaviours, including aggression, noncompliance, and prosocial behaviours.
Max ERC Funding
1 611 970 €
Duration
Start date: 2010-02-01, End date: 2015-03-31
Project acronym CHINA
Project Trade, Productivity, and Firm Capabilities in China's Manufacturing Sector
Researcher (PI) Johannes Van Biesebroeck
Host Institution (HI) KATHOLIEKE UNIVERSITEIT LEUVEN
Country Belgium
Call Details Starting Grant (StG), SH1, ERC-2009-StG
Summary China s economy has expanded at breakneck speed to become the 3rd largest trading country in the world and the largest recipient of foreign direct investment (FDI). Entry into the WTO in 2001 was a landmark event in this ongoing process and I propose to study several channels through which it spurred China s industrial development. Crucially, I will take an integrated view of the different ways in which Chinese and Western firms interact: through trade flows, as suppliers or competitors, FDI, or knowledge transfers. First, I investigate the existence and magnitude of a causal link from the trade reforms to productivity growth. Second, I look for evidence of capability upgrading, such as increased production efficiency, an ability to produce higher quality products, or introduce new products by innovating. Third, I study the mechanisms for the impact of trade and FDI on local firms, in particular assessing the relative importance of increased market competition and the transfer of know-how from foreign firms. For this analysis, I draw heavily on a unique data set. Information on the universe of Chinese manufacturing firms is being linked to the universe of Chinese trade transactions. These are unique research tools on their own, but as a linked data set, the only comparable one in the world is for the U.S. economy. The Chinese data has the advantage to contain detailed information on FDI, distinguishes between ordinary and processing trade, and contains information on innovation, such as R&D and sales of new goods. Answering the above questions is important for other developing countries wanting to learn from China s experience and for Western firms assessing how quickly Chinese firms will become viable suppliers of sophisticated inputs or direct competitors. By estimating models that are explicitly derived from new theories, I advance the literature at the interaction of international and development economics, industrial organization, economic geography.
Summary
China s economy has expanded at breakneck speed to become the 3rd largest trading country in the world and the largest recipient of foreign direct investment (FDI). Entry into the WTO in 2001 was a landmark event in this ongoing process and I propose to study several channels through which it spurred China s industrial development. Crucially, I will take an integrated view of the different ways in which Chinese and Western firms interact: through trade flows, as suppliers or competitors, FDI, or knowledge transfers. First, I investigate the existence and magnitude of a causal link from the trade reforms to productivity growth. Second, I look for evidence of capability upgrading, such as increased production efficiency, an ability to produce higher quality products, or introduce new products by innovating. Third, I study the mechanisms for the impact of trade and FDI on local firms, in particular assessing the relative importance of increased market competition and the transfer of know-how from foreign firms. For this analysis, I draw heavily on a unique data set. Information on the universe of Chinese manufacturing firms is being linked to the universe of Chinese trade transactions. These are unique research tools on their own, but as a linked data set, the only comparable one in the world is for the U.S. economy. The Chinese data has the advantage to contain detailed information on FDI, distinguishes between ordinary and processing trade, and contains information on innovation, such as R&D and sales of new goods. Answering the above questions is important for other developing countries wanting to learn from China s experience and for Western firms assessing how quickly Chinese firms will become viable suppliers of sophisticated inputs or direct competitors. By estimating models that are explicitly derived from new theories, I advance the literature at the interaction of international and development economics, industrial organization, economic geography.
Max ERC Funding
944 940 €
Duration
Start date: 2010-02-01, End date: 2016-01-31
Project acronym COCOON
Project Conformal coating of nanoporous materials
Researcher (PI) Christophe Detavernier
Host Institution (HI) UNIVERSITEIT GENT
Country Belgium
Call Details Starting Grant (StG), PE8, ERC-2009-StG
Summary CONTEXT - Nanoporous structures are used for application in catalysis, molecular separation, fuel cells, dye sensitized solar cells etc. Given the near molecular size of the porous network, it is extremely challenging to modify the interior surface of the pores after the nanoporous material has been synthesized.
THIS PROPOSAL - Atomic Layer Deposition (ALD) is envisioned as a novel technique for creating catalytically active sites and for controlling the pore size distribution in nanoporous materials. ALD is a self-limited growth method that is characterized by alternating exposure of the growing film to precursor vapours, resulting in the sequential deposition of (sub)monolayers. It provides atomic level control of thickness and composition, and is currently used in micro-electronics to grow films into structures with aspect ratios of up to 100 / 1. We aim to make the fundamental breakthroughs necessary to enable atomic layer deposition to engineer the composition, size and shape of the interior surface of nanoporous materials with aspect ratios in excess of 10,000 / 1.
POTENTIAL IMPACT Achieving these objectives will enable atomic level engineering of the interior surface of any porous material. We plan to focus on three specific applications where our results will have both medium and long term impacts:
- Engineering the composition of pore walls using ALD, e.g. to create catalytic sites (e.g. Al for acid sites, Ti for redox sites, or Pt, Pd or Ni)
- chemical functionalization of the pore walls with atomic level control can result in breakthrough applications in the fields of catalysis and sensors.
- Atomic level control of the size of nanopores through ALD controlling the pore size distribution of molecular sieves can potentially lead to breakthrough applications in molecular separation and filtration.
- Nanocasting replication of a mesoporous template by means of ALD can result in the mass-scale production of nanotubes.
Summary
CONTEXT - Nanoporous structures are used for application in catalysis, molecular separation, fuel cells, dye sensitized solar cells etc. Given the near molecular size of the porous network, it is extremely challenging to modify the interior surface of the pores after the nanoporous material has been synthesized.
THIS PROPOSAL - Atomic Layer Deposition (ALD) is envisioned as a novel technique for creating catalytically active sites and for controlling the pore size distribution in nanoporous materials. ALD is a self-limited growth method that is characterized by alternating exposure of the growing film to precursor vapours, resulting in the sequential deposition of (sub)monolayers. It provides atomic level control of thickness and composition, and is currently used in micro-electronics to grow films into structures with aspect ratios of up to 100 / 1. We aim to make the fundamental breakthroughs necessary to enable atomic layer deposition to engineer the composition, size and shape of the interior surface of nanoporous materials with aspect ratios in excess of 10,000 / 1.
POTENTIAL IMPACT Achieving these objectives will enable atomic level engineering of the interior surface of any porous material. We plan to focus on three specific applications where our results will have both medium and long term impacts:
- Engineering the composition of pore walls using ALD, e.g. to create catalytic sites (e.g. Al for acid sites, Ti for redox sites, or Pt, Pd or Ni)
- chemical functionalization of the pore walls with atomic level control can result in breakthrough applications in the fields of catalysis and sensors.
- Atomic level control of the size of nanopores through ALD controlling the pore size distribution of molecular sieves can potentially lead to breakthrough applications in molecular separation and filtration.
- Nanocasting replication of a mesoporous template by means of ALD can result in the mass-scale production of nanotubes.
Max ERC Funding
1 432 800 €
Duration
Start date: 2010-01-01, End date: 2014-12-31
Project acronym EATINGBODIES
Project The eating body in Western practice and theory
Researcher (PI) Anne-Marie Mol
Host Institution (HI) UNIVERSITEIT VAN AMSTERDAM
Country Netherlands
Call Details Advanced Grant (AdG), SH2, ERC-2009-AdG
Summary Human bodies eat. But what does this entail? The proposed project will explore how the eating body is shaped in different Western practices. These will include nutritional research and health care clinics, sites that have a far-reaching impact on how we eat. Four related sub-projects will trace the most relevant contrasts: (1) the eating body's health: limiting calorie intake versus maximising satisfaction; (2) the eating body's sensitivity: on tasting in various practices; (3) the eating body and other eaters: on different ways of relating individual and collective; (4) the eating body and its environment: on absorbing food, excreting waste and different bodily boundaries. These four sub-projects will together inform an anthropology of the eating body in Western practices. A fifth sub-project will attend to the eater in theory . Eating may be ubiquitous in practice, but it is strikingly absent from theorising in the Western philosophical tradition. This has profound implications for social science repertoires, which tend to include an actor modelled on the neuromuscular body. This actor sees, hears, moves and manipulates, but does not eat. Drawing on what we learn about the eating body in the empirical parts of the study, the fifth sub-project will model the actor on the eater. Eaters do not observe from a distance, but are mixed up with their surroundings. They do not judge impartially, but appreciate their food as they destroy it. Their metabolic activity, distributed over every cell, does not depend on central control. The theoretical possibilities that follow, will be experimentally explored. Thus the project aims to substantially enrich the Western tradition by feeding it with lessons drawn from its own marginalised experiences.
Summary
Human bodies eat. But what does this entail? The proposed project will explore how the eating body is shaped in different Western practices. These will include nutritional research and health care clinics, sites that have a far-reaching impact on how we eat. Four related sub-projects will trace the most relevant contrasts: (1) the eating body's health: limiting calorie intake versus maximising satisfaction; (2) the eating body's sensitivity: on tasting in various practices; (3) the eating body and other eaters: on different ways of relating individual and collective; (4) the eating body and its environment: on absorbing food, excreting waste and different bodily boundaries. These four sub-projects will together inform an anthropology of the eating body in Western practices. A fifth sub-project will attend to the eater in theory . Eating may be ubiquitous in practice, but it is strikingly absent from theorising in the Western philosophical tradition. This has profound implications for social science repertoires, which tend to include an actor modelled on the neuromuscular body. This actor sees, hears, moves and manipulates, but does not eat. Drawing on what we learn about the eating body in the empirical parts of the study, the fifth sub-project will model the actor on the eater. Eaters do not observe from a distance, but are mixed up with their surroundings. They do not judge impartially, but appreciate their food as they destroy it. Their metabolic activity, distributed over every cell, does not depend on central control. The theoretical possibilities that follow, will be experimentally explored. Thus the project aims to substantially enrich the Western tradition by feeding it with lessons drawn from its own marginalised experiences.
Max ERC Funding
1 848 701 €
Duration
Start date: 2010-03-01, End date: 2015-02-28
Project acronym ECHR
Project Strengthening the European Court of Human Rights: More Accountability Through Better Legal Reasoning
Researcher (PI) Eva Brems
Host Institution (HI) UNIVERSITEIT GENT
Country Belgium
Call Details Starting Grant (StG), SH2, ERC-2009-StG
Summary Human rights are under pressure, in Europe as elsewhere, due to several developments, namely [1] War on terror: the pressures generated by competing discourses [2] Coping with the dangers of rights inflation [3] Conflicting rights: how to handle rights as contested claims [4] The challenges of dealing with universality under fire In this context, the human rights leadership of the European Court of Human Rights is of crucial importance. Yet the Court is not fit for purpose. Inconsistencies and sloppy legal reasoning undermine both its credibility and the impact of its decisions. The research programme that I propose will strengthen the consistency and persuasiveness of Court s legal reasoning so as to improve its accountability and transparency. My aim is to identify new technical solutions for important human rights problems, by the development and application of creative methodologies. The substantive innovations within the field of European human rights law that I propose to make are: [a] the development of new legal tools, which will consistently integrate the accommodation of the particularities of non-dominant groups into the reasoning of the European Court of Human Rights [b] the development of a new theoretical framework combining minimum and maximum approaches to human rights protection, followed by its translation into clear legal criteria for use by the European Court of Human Rights [c] the development of a script that will enable the adoption of a consistent approach by the European Court of Human Rights to conflicts between human rights My methodological approach is characterized by the combination of empirical and normative dimensions, a 360° comparison, and the integration of qualitative research methods (interviews and focus groups with key stakeholders).
Summary
Human rights are under pressure, in Europe as elsewhere, due to several developments, namely [1] War on terror: the pressures generated by competing discourses [2] Coping with the dangers of rights inflation [3] Conflicting rights: how to handle rights as contested claims [4] The challenges of dealing with universality under fire In this context, the human rights leadership of the European Court of Human Rights is of crucial importance. Yet the Court is not fit for purpose. Inconsistencies and sloppy legal reasoning undermine both its credibility and the impact of its decisions. The research programme that I propose will strengthen the consistency and persuasiveness of Court s legal reasoning so as to improve its accountability and transparency. My aim is to identify new technical solutions for important human rights problems, by the development and application of creative methodologies. The substantive innovations within the field of European human rights law that I propose to make are: [a] the development of new legal tools, which will consistently integrate the accommodation of the particularities of non-dominant groups into the reasoning of the European Court of Human Rights [b] the development of a new theoretical framework combining minimum and maximum approaches to human rights protection, followed by its translation into clear legal criteria for use by the European Court of Human Rights [c] the development of a script that will enable the adoption of a consistent approach by the European Court of Human Rights to conflicts between human rights My methodological approach is characterized by the combination of empirical and normative dimensions, a 360° comparison, and the integration of qualitative research methods (interviews and focus groups with key stakeholders).
Max ERC Funding
1 370 000 €
Duration
Start date: 2009-11-01, End date: 2014-10-31
Project acronym ENTCHILD
Project The Entertainization of Childhood: An Etiology of Risks and Opportunities
Researcher (PI) Patricia Maria Valkenburg
Host Institution (HI) UNIVERSITEIT VAN AMSTERDAM
Country Netherlands
Call Details Advanced Grant (AdG), SH2, ERC-2009-AdG
Summary Never before has media entertainment been so abundantly accessible to children. In this project, I propose an entirely new theoretical model to understand entertainment processing and effects. The model enables us to simultaneously investigate: (a) how and why certain types of media entertainment may influence certain children, (b) which children are particularly susceptible to positive, which to negative, and which to both positive and negative entertainment effects, and (c) how children s social environment can maximize positive and minimize negative entertainment effects on children. The project involves a longitudinal panel study among 900 Dutch families. To measure the variables in the model, we will use some well-established survey instruments and neuropsychological tests. We will also employ two less conventional methods (coded media-use diaries and experience sampling methods) that may enhance serendipity in the development of our theory-advancing insights. We will use state-of-the art data-analytic techniques (e.g., multi-level and latent-growth curve modelling) to analyse the data. Although adventurous, this transdisciplinary project, the first in its kind, has great theoretical significance. If the assumptions of my model are supported, it may lead to a fundamental re-evaluation of earlier media-effects theories and research on children. The project will also have tremendous social relevance, not only for parents, but also for programme makers, educators, and the society as a whole. After all, only if we truly understand why, how, and which children are influenced by certain types of media entertainment, are we able to adequately target prevention and intervention strategies at these children.
Summary
Never before has media entertainment been so abundantly accessible to children. In this project, I propose an entirely new theoretical model to understand entertainment processing and effects. The model enables us to simultaneously investigate: (a) how and why certain types of media entertainment may influence certain children, (b) which children are particularly susceptible to positive, which to negative, and which to both positive and negative entertainment effects, and (c) how children s social environment can maximize positive and minimize negative entertainment effects on children. The project involves a longitudinal panel study among 900 Dutch families. To measure the variables in the model, we will use some well-established survey instruments and neuropsychological tests. We will also employ two less conventional methods (coded media-use diaries and experience sampling methods) that may enhance serendipity in the development of our theory-advancing insights. We will use state-of-the art data-analytic techniques (e.g., multi-level and latent-growth curve modelling) to analyse the data. Although adventurous, this transdisciplinary project, the first in its kind, has great theoretical significance. If the assumptions of my model are supported, it may lead to a fundamental re-evaluation of earlier media-effects theories and research on children. The project will also have tremendous social relevance, not only for parents, but also for programme makers, educators, and the society as a whole. After all, only if we truly understand why, how, and which children are influenced by certain types of media entertainment, are we able to adequately target prevention and intervention strategies at these children.
Max ERC Funding
2 500 000 €
Duration
Start date: 2010-12-01, End date: 2016-08-31
Project acronym EXACTA
Project Exploring the aggressiveness of prostate cancer to enable an individualised treatment approach
Researcher (PI) Thomas Wilhelmus Jacobus Scheenen
Host Institution (HI) STICHTING KATHOLIEKE UNIVERSITEIT
Country Netherlands
Call Details Starting Grant (StG), LS7, ERC-2009-StG
Summary Prostate cancer is the most frequently diagnosed malignancy in the western male population and the associated socio-economic impact on healthcare is more than worrying. There is one key feature of confined (stage T2) prostate cancer that needs to be addressed with immediate urgency: its true aggressiveness. Not all cancers are life threatening and early diagnosis, although needed to improve outcome, will lead to overtreatment of patients with indolent prostate cancer resulting in unnecessary treatment-related morbidity. Therefore, methods to identify clinically significant forms of prostate cancer have to be developed. To pursue this, the initial assessment of the extent of the disease process (clinical staging) needs to be adequate. Obtaining pre-treatment representative tumor tissue (biopsies) is a major clinical challenge, as the disease is often multi-focal and heterogeneous. Accurate functional in vivo imaging modalities could guide these biopsies. Modern genomics technologies have identified numerous cancer cell-associated genetic markers being expressed in prostate cancer tissue or body fluids. Closing the gap between genomics and a non-invasive metabolic assessment of the in vivo prostate, we propose to identify new in vivo targets/biomarkers indicating confined prostate cancer aggressiveness with the underlying central hypothesis: early functional metabolic differences in different tumor foci determine whether it will grow into life-threatening prostate cancer or not. To track these early metabolic differences, the very latest magnetic resonance methodologies, including 13C MR of hyperpolarized metabolites and 1H- and 31P-MRSI of the in vivo human prostate at a field strength of 7 Tesla, will be further developed and implemented. In the well-established translational research environment at the host institution, potential new biomarkers translate into molecular diagnostics or imaging tools for an accurate individual assessment of cancer aggressiveness.
Summary
Prostate cancer is the most frequently diagnosed malignancy in the western male population and the associated socio-economic impact on healthcare is more than worrying. There is one key feature of confined (stage T2) prostate cancer that needs to be addressed with immediate urgency: its true aggressiveness. Not all cancers are life threatening and early diagnosis, although needed to improve outcome, will lead to overtreatment of patients with indolent prostate cancer resulting in unnecessary treatment-related morbidity. Therefore, methods to identify clinically significant forms of prostate cancer have to be developed. To pursue this, the initial assessment of the extent of the disease process (clinical staging) needs to be adequate. Obtaining pre-treatment representative tumor tissue (biopsies) is a major clinical challenge, as the disease is often multi-focal and heterogeneous. Accurate functional in vivo imaging modalities could guide these biopsies. Modern genomics technologies have identified numerous cancer cell-associated genetic markers being expressed in prostate cancer tissue or body fluids. Closing the gap between genomics and a non-invasive metabolic assessment of the in vivo prostate, we propose to identify new in vivo targets/biomarkers indicating confined prostate cancer aggressiveness with the underlying central hypothesis: early functional metabolic differences in different tumor foci determine whether it will grow into life-threatening prostate cancer or not. To track these early metabolic differences, the very latest magnetic resonance methodologies, including 13C MR of hyperpolarized metabolites and 1H- and 31P-MRSI of the in vivo human prostate at a field strength of 7 Tesla, will be further developed and implemented. In the well-established translational research environment at the host institution, potential new biomarkers translate into molecular diagnostics or imaging tools for an accurate individual assessment of cancer aggressiveness.
Max ERC Funding
1 800 209 €
Duration
Start date: 2010-03-01, End date: 2015-02-28
Project acronym FLUPLAN
Project Novel strategies to combat future influenza pandemics
Researcher (PI) Albertus Dominicus Marcellinus Erasmus Osterhaus
Host Institution (HI) ERASMUS UNIVERSITAIR MEDISCH CENTRUM ROTTERDAM
Country Netherlands
Call Details Advanced Grant (AdG), LS7, ERC-2009-AdG
Summary The Mexican influenza A virus (H1N1) reminds us that the threat of an influenza pandemic is real. The 1918 Spanish flu virus, also started as a low pathogenic virus that mutated into a highly pathogenic virus within months, causing more than 50 million deaths. The Mexican influenza A virus (H1N1) may follow the same path. FLUPLAN will expand our knowledge of the packaging signals that govern reassortment events between influenza A viruses in general and between the Mexican influenza A virus (H1N1) and circulating human, porcine and highly pathogenic avian influenza A viruses in particular. FLUPLAN will thus lead to fundamental insights in the mechanisms that govern reassortment phenomena, providing a risk assessment concerning the pandemic potential of circulating avian and mammalian influenza A viruses. This will provide us with a panel of possible reassortant viruses of potentially pandemic nature. The MVA vaccine vector system that efficiently induced broad protective immunity against HPAI-H5N1 viruses in macaques, will be used for the preparation of a repository of MVA-H based pandemic vaccine seed viruses.The selection will be based on the reassortant viruses mentioned above, and on a repository of avian influenza viruses of the 16HA subtypes including the Mexican influenza A virus (H1N1) of avian/swine origin. The added value of including a relevant MVA-NP in the immunization schedule to obtain broader and longer protection will be determined in a macaque infection model. Collectively these studies will provide us with a highly versatile system that anticipates on future pandemic events by having seed viruses for vaccine development ready to go on the shelf, for the rapid production of broadly protective pandemic vaccines, which will save time and thus lives.
Summary
The Mexican influenza A virus (H1N1) reminds us that the threat of an influenza pandemic is real. The 1918 Spanish flu virus, also started as a low pathogenic virus that mutated into a highly pathogenic virus within months, causing more than 50 million deaths. The Mexican influenza A virus (H1N1) may follow the same path. FLUPLAN will expand our knowledge of the packaging signals that govern reassortment events between influenza A viruses in general and between the Mexican influenza A virus (H1N1) and circulating human, porcine and highly pathogenic avian influenza A viruses in particular. FLUPLAN will thus lead to fundamental insights in the mechanisms that govern reassortment phenomena, providing a risk assessment concerning the pandemic potential of circulating avian and mammalian influenza A viruses. This will provide us with a panel of possible reassortant viruses of potentially pandemic nature. The MVA vaccine vector system that efficiently induced broad protective immunity against HPAI-H5N1 viruses in macaques, will be used for the preparation of a repository of MVA-H based pandemic vaccine seed viruses.The selection will be based on the reassortant viruses mentioned above, and on a repository of avian influenza viruses of the 16HA subtypes including the Mexican influenza A virus (H1N1) of avian/swine origin. The added value of including a relevant MVA-NP in the immunization schedule to obtain broader and longer protection will be determined in a macaque infection model. Collectively these studies will provide us with a highly versatile system that anticipates on future pandemic events by having seed viruses for vaccine development ready to go on the shelf, for the rapid production of broadly protective pandemic vaccines, which will save time and thus lives.
Max ERC Funding
2 187 758 €
Duration
Start date: 2010-06-01, End date: 2015-05-31
Project acronym FUNCTIONAL GENOMICS
Project DISSECTING GENETIC DEPENDENCIES IN CANCER
Researcher (PI) Rene Bernards
Host Institution (HI) STICHTING HET NEDERLANDS KANKER INSTITUUT-ANTONI VAN LEEUWENHOEK ZIEKENHUIS
Country Netherlands
Call Details Advanced Grant (AdG), LS2, ERC-2009-AdG
Summary While significant progress has been made in the diagnosis and treatment of cancer, several major issues remain unresolved. First, only a minority of patients respond to most forms of (chemo)therapy. It is generally believed that this poor responsiveness to drugs has its origin, at least in part, in the molecular heterogeneity of cancer. This heterogeneity requires the use of biomarkers to stratify patients having seemingly similar tumors according to their likely responses to specific cancer therapies. To identify such biomarkers, we will use large-scale genetic screens to identify genes that are causally involved in controlling responses to cancer drugs. Such genes are likely biomarkers of drug responsiveness in the clinic. Availability of such drug response biomarkers will facilitate a more personalized therapy choice for each individual patient. A second major deficit in effective cancer therapy is the lack of sufficient highly selective drug targets. The large-scale cancer genome re-sequencing efforts already indicate that there is a paucity of druggable genes that are consistently mutated in cancer and the same holds true for genes that are consistently over-expressed in cancer. Hence, there is an urgent need for innovative drug targets that have a similar cancer-selectivity as the genes that are specifically mutated or over-expressed in cancer. In this project, we will use large-scale loss of function genetic screens, exploiting the concept of synthetic lethality , to identify genes whose inactivation is selectively toxic to cells having a defined cancer-specific genetic alteration. Drugs against these targets will be highly cancer-selective, as their activity hinges on the presence of a specific genetic defect, which is only present in the cancer cell.
Summary
While significant progress has been made in the diagnosis and treatment of cancer, several major issues remain unresolved. First, only a minority of patients respond to most forms of (chemo)therapy. It is generally believed that this poor responsiveness to drugs has its origin, at least in part, in the molecular heterogeneity of cancer. This heterogeneity requires the use of biomarkers to stratify patients having seemingly similar tumors according to their likely responses to specific cancer therapies. To identify such biomarkers, we will use large-scale genetic screens to identify genes that are causally involved in controlling responses to cancer drugs. Such genes are likely biomarkers of drug responsiveness in the clinic. Availability of such drug response biomarkers will facilitate a more personalized therapy choice for each individual patient. A second major deficit in effective cancer therapy is the lack of sufficient highly selective drug targets. The large-scale cancer genome re-sequencing efforts already indicate that there is a paucity of druggable genes that are consistently mutated in cancer and the same holds true for genes that are consistently over-expressed in cancer. Hence, there is an urgent need for innovative drug targets that have a similar cancer-selectivity as the genes that are specifically mutated or over-expressed in cancer. In this project, we will use large-scale loss of function genetic screens, exploiting the concept of synthetic lethality , to identify genes whose inactivation is selectively toxic to cells having a defined cancer-specific genetic alteration. Drugs against these targets will be highly cancer-selective, as their activity hinges on the presence of a specific genetic defect, which is only present in the cancer cell.
Max ERC Funding
2 176 000 €
Duration
Start date: 2010-06-01, End date: 2015-05-31
Project acronym ITOP
Project Integrated Theory and Observations of the Pleistocene
Researcher (PI) Michel Crucifix
Host Institution (HI) UNIVERSITE CATHOLIQUE DE LOUVAIN
Country Belgium
Call Details Starting Grant (StG), PE10, ERC-2009-StG
Summary There are essentially two approaches to climate modelling. Over the past decades, efforts to understand climate dynamics have been dominated by computationally-intensive modelling aiming to include all possible processes, essentially by integrating the equations for the relevant physics. This is the bottom-up approach. However, even the largest models include many approximations and the cumulative effect of these approximations make it impossible to predict the evolution of climate over several tens of thousands of years. For this reason a more phenomenological approach is also useful. It consists in identifying coherent spatio-temporal structures in the climate time-series in order to understand how they interact. Theoretically, the two approaches focus on different levels of information and they should be complementary. In practice, they are generally perceived to be in philosophical opposition and there is no unifying methodological framework. Our ambition is to provide this methodological framework with a focus on climate dynamics at the scale of the Pleistocene (last 2 million years). We pursue a triple objective (1) the framework must be rigorous but flexible enough to test competing theories of ice ages (2) it must avoid circular reasonings associated with ``tuning'' (3) it must provide a credible basis to unify our knowledge of climate dynamics and provide a state-of-the-art ``prediction horizon''. To this end we propose a methodology spanning different but complementary disciplines: physical climatology, empirical palaeoclimatology, dynamical system analysis and applied Bayesian statistics. It is intended to have a wide applicability in climate science where there is an interest in using reduced-order representations of the climate system.
Summary
There are essentially two approaches to climate modelling. Over the past decades, efforts to understand climate dynamics have been dominated by computationally-intensive modelling aiming to include all possible processes, essentially by integrating the equations for the relevant physics. This is the bottom-up approach. However, even the largest models include many approximations and the cumulative effect of these approximations make it impossible to predict the evolution of climate over several tens of thousands of years. For this reason a more phenomenological approach is also useful. It consists in identifying coherent spatio-temporal structures in the climate time-series in order to understand how they interact. Theoretically, the two approaches focus on different levels of information and they should be complementary. In practice, they are generally perceived to be in philosophical opposition and there is no unifying methodological framework. Our ambition is to provide this methodological framework with a focus on climate dynamics at the scale of the Pleistocene (last 2 million years). We pursue a triple objective (1) the framework must be rigorous but flexible enough to test competing theories of ice ages (2) it must avoid circular reasonings associated with ``tuning'' (3) it must provide a credible basis to unify our knowledge of climate dynamics and provide a state-of-the-art ``prediction horizon''. To this end we propose a methodology spanning different but complementary disciplines: physical climatology, empirical palaeoclimatology, dynamical system analysis and applied Bayesian statistics. It is intended to have a wide applicability in climate science where there is an interest in using reduced-order representations of the climate system.
Max ERC Funding
1 047 600 €
Duration
Start date: 2009-09-01, End date: 2014-08-31
Project acronym KINSIGN
Project Guarding Genome Stability: Dynamic Control of Chromosome Segregation by Kinetochore Signalling Pathways
Researcher (PI) Geert Johannes Petrus Lambertus Kops
Host Institution (HI) UNIVERSITAIR MEDISCH CENTRUM UTRECHT
Country Netherlands
Call Details Starting Grant (StG), LS3, ERC-2009-StG
Summary Equal segregation of chromosomes during cell division is vital to all life. Using a unique combination of cell biological and biochemical techniques, I will show how an essential set of enzymes promotes error-free chromosome segregation. During each cell division, genetically identical daughter cells are generated by accurate partitioning of the duplicated chromosomes. This relies on proper spatio-temporal execution of various highly dynamic processes. The activity of a small group of enzymes is crucial for at least two of these processes: correct chromosome positioning on the cell's equator prior to cell division and the ability to prevent cell division until every chromosome is thus positioned. The molecular fundamentals of signalling to and from these enzymes will be uncovered by chemical genetics, quantitative (phospho)proteomics, rapid affinity purifications and live-cell deconvolution microscopy. The resulting insights will open research avenues that will ultimately contribute to comprehensive models of how biochemical networks manage to prevent chromosome mis-segregation.
Summary
Equal segregation of chromosomes during cell division is vital to all life. Using a unique combination of cell biological and biochemical techniques, I will show how an essential set of enzymes promotes error-free chromosome segregation. During each cell division, genetically identical daughter cells are generated by accurate partitioning of the duplicated chromosomes. This relies on proper spatio-temporal execution of various highly dynamic processes. The activity of a small group of enzymes is crucial for at least two of these processes: correct chromosome positioning on the cell's equator prior to cell division and the ability to prevent cell division until every chromosome is thus positioned. The molecular fundamentals of signalling to and from these enzymes will be uncovered by chemical genetics, quantitative (phospho)proteomics, rapid affinity purifications and live-cell deconvolution microscopy. The resulting insights will open research avenues that will ultimately contribute to comprehensive models of how biochemical networks manage to prevent chromosome mis-segregation.
Max ERC Funding
1 572 000 €
Duration
Start date: 2009-11-01, End date: 2014-10-31
Project acronym LANGUAGE IN OUR HAND
Project Language in our hand: The role of modality in shaping spatial language development in deaf and hearing children
Researcher (PI) Asli Ozyurek-Hagoort
Host Institution (HI) STICHTING KATHOLIEKE UNIVERSITEIT
Country Netherlands
Call Details Starting Grant (StG), SH4, ERC-2009-StG
Summary The world's languages differ substantially from each other. Yet, all children learn the language(s) they are born into quite easily. A major scientific question in language has been to what extent follows a universal trajectory based on an innate design for language, and to what extent it is shaped by specific properties of the language that is being learned. By comparing the acquisition of a spoken language with a language that uses a visuo-spatial format, namely signed languages, a unique window of opportunity is created for investigating this fundamental question. Compared to spoken languages, signed languages represent spatial relations in an analogue way rather than arbitrarily. The proposed study will use a novel approach to investigate whether these differences influence the trajectory of how deaf versus hearing children learn to express spatial relations in their native languages (i.e., Turkish Sign Language versus Turkish). Spatial language development of deaf children will be compared with spoken language development as well as to the co-speech gestures of hearing children as the first time. Thus the proposed study will bring together state-of-the-art research in language acquisition, sign language, and gesture studies in a unique and ground-breaking way. Furthermore gathering data on acquisition of less studied and typologically different signed and spoken languages is critical to test some of previous research results based on Western languages. Due to spread use of cochlear implants fewer deaf children learn sign languages in European countries. The context in Turkey provides an unprecedented opportunity to conduct such a study with many participants before cochlear implants are also widespread in Turkey.
Summary
The world's languages differ substantially from each other. Yet, all children learn the language(s) they are born into quite easily. A major scientific question in language has been to what extent follows a universal trajectory based on an innate design for language, and to what extent it is shaped by specific properties of the language that is being learned. By comparing the acquisition of a spoken language with a language that uses a visuo-spatial format, namely signed languages, a unique window of opportunity is created for investigating this fundamental question. Compared to spoken languages, signed languages represent spatial relations in an analogue way rather than arbitrarily. The proposed study will use a novel approach to investigate whether these differences influence the trajectory of how deaf versus hearing children learn to express spatial relations in their native languages (i.e., Turkish Sign Language versus Turkish). Spatial language development of deaf children will be compared with spoken language development as well as to the co-speech gestures of hearing children as the first time. Thus the proposed study will bring together state-of-the-art research in language acquisition, sign language, and gesture studies in a unique and ground-breaking way. Furthermore gathering data on acquisition of less studied and typologically different signed and spoken languages is critical to test some of previous research results based on Western languages. Due to spread use of cochlear implants fewer deaf children learn sign languages in European countries. The context in Turkey provides an unprecedented opportunity to conduct such a study with many participants before cochlear implants are also widespread in Turkey.
Max ERC Funding
1 159 000 €
Duration
Start date: 2010-01-01, End date: 2014-12-31
Project acronym MECHWNTSIGNALS
Project Mechanisms of Wnt Signaling Initiation
Researcher (PI) Madelon Maria Maurice
Host Institution (HI) UNIVERSITAIR MEDISCH CENTRUM UTRECHT
Country Netherlands
Call Details Starting Grant (StG), LS3, ERC-2009-StG
Summary Wnt proteins dictate critical cell growth and lineage decisions during development and in adult tissue homeostasis. Inappropriate activation of Wnt signalling is a frequent cause of cancer. The earliest events that occur after Wnts bind their receptors at the cell surface, such as receptor endocytosis and recruitment of cytoplasmic effectors, are decisive for downstream gene activation but the underlying mechanisms by which these events process and tune the Wnt signal remain poorly understood. The key objective of this proposal is to resolve critical molecular events that drive initiation of the Wnt cascade by focusing on two central questions: How does protein trafficking control Wnt signalling initiation? What molecular mechanisms underlie Wnt-induced formation and activation of multiprotein complexes? I will take a unique approach combining advanced live cell imaging and high resolution immuno-electron microscopy with sophisticated peptide chemistry, gene silencing and biochemistry to dissect early Wnt signalling events at the level of isolated molecules, in cultured cells and in complex tissues of living animals. With the proposed interdisciplinary work I expect to uncover where key Wnt signalling steps occur, which proteins are involved, how they direct protein complex assembly, trafficking and turnover and how these events control transmission of the Wnt signal. Mechanistic insight in how Wnt signals are transmitted is vital to understand how pathway specificity and sensitivity is controlled. Basic insight in these processes will be of utmost importance for the design of strategies to interfere with Wnt signalling in cancer.
Summary
Wnt proteins dictate critical cell growth and lineage decisions during development and in adult tissue homeostasis. Inappropriate activation of Wnt signalling is a frequent cause of cancer. The earliest events that occur after Wnts bind their receptors at the cell surface, such as receptor endocytosis and recruitment of cytoplasmic effectors, are decisive for downstream gene activation but the underlying mechanisms by which these events process and tune the Wnt signal remain poorly understood. The key objective of this proposal is to resolve critical molecular events that drive initiation of the Wnt cascade by focusing on two central questions: How does protein trafficking control Wnt signalling initiation? What molecular mechanisms underlie Wnt-induced formation and activation of multiprotein complexes? I will take a unique approach combining advanced live cell imaging and high resolution immuno-electron microscopy with sophisticated peptide chemistry, gene silencing and biochemistry to dissect early Wnt signalling events at the level of isolated molecules, in cultured cells and in complex tissues of living animals. With the proposed interdisciplinary work I expect to uncover where key Wnt signalling steps occur, which proteins are involved, how they direct protein complex assembly, trafficking and turnover and how these events control transmission of the Wnt signal. Mechanistic insight in how Wnt signals are transmitted is vital to understand how pathway specificity and sensitivity is controlled. Basic insight in these processes will be of utmost importance for the design of strategies to interfere with Wnt signalling in cancer.
Max ERC Funding
1 513 800 €
Duration
Start date: 2009-12-01, End date: 2014-11-30
Project acronym MHC CLASS II-OMICS
Project Towards understanding and manipulation of MHC class II antigen presentation
Researcher (PI) Jacobus Jozef Cornelis Neefjes
Host Institution (HI) STICHTING HET NEDERLANDS KANKER INSTITUUT-ANTONI VAN LEEUWENHOEK ZIEKENHUIS
Country Netherlands
Call Details Advanced Grant (AdG), LS6, ERC-2009-AdG
Summary MHC class II molecules are crucial for specific immune responses. In a complicated series of cell biological events, they catch a peptide in the endosomal route for presentation at the plasma membrane to the immune system. At present some 20 factors have been identified as involved in the process of MHC class II antigen presentation that are potential targets for manipulating these responses as MHC class II molecules are involved in most auto-immune diseases. Defining further targets for manipulating MHC class II responses would have implications for various disease states when these can be inhibited by chemical compounds or biologicals. We have performed a genome-wide FACS-based siRNA screen for molecules affecting MHC class II expression and peptide loading. After 100.000 individual 2-color FACS analyses, we identified 276 proteins that can be functionally sub-clustered for expression and for cell biological effects. We now propose to study the cell biology of these 276 hits to elucidate the molecular and cell biological mechanisms of MHC class II antigen presentation (the MHC class II-ome). As a first step, the 276 hits are sub-clustered for effects on MHC class II transcription or cell biology. These sub-clusters may correspond to networks. We propose to validate and extend these networks by experiments by a team of scientists concentrating on the various aspects of the cell biology of MHC class II antigen presentation. A parallel chemical compound screen will be performed to identify compounds affecting MHC class II antigen presentation. By cross-correlating the biological phenotypes of compounds with those of siRNA silencing, novel target-lead combinations will be defined by reciprocal chemical genetics. Our experiments should result in a global understanding of MHC class II antigen presentation. In addition, it should reveal target-lead combinations for manipulation of MHC class II antigen presentation in infection, auto-immune disease and transplantation.
Summary
MHC class II molecules are crucial for specific immune responses. In a complicated series of cell biological events, they catch a peptide in the endosomal route for presentation at the plasma membrane to the immune system. At present some 20 factors have been identified as involved in the process of MHC class II antigen presentation that are potential targets for manipulating these responses as MHC class II molecules are involved in most auto-immune diseases. Defining further targets for manipulating MHC class II responses would have implications for various disease states when these can be inhibited by chemical compounds or biologicals. We have performed a genome-wide FACS-based siRNA screen for molecules affecting MHC class II expression and peptide loading. After 100.000 individual 2-color FACS analyses, we identified 276 proteins that can be functionally sub-clustered for expression and for cell biological effects. We now propose to study the cell biology of these 276 hits to elucidate the molecular and cell biological mechanisms of MHC class II antigen presentation (the MHC class II-ome). As a first step, the 276 hits are sub-clustered for effects on MHC class II transcription or cell biology. These sub-clusters may correspond to networks. We propose to validate and extend these networks by experiments by a team of scientists concentrating on the various aspects of the cell biology of MHC class II antigen presentation. A parallel chemical compound screen will be performed to identify compounds affecting MHC class II antigen presentation. By cross-correlating the biological phenotypes of compounds with those of siRNA silencing, novel target-lead combinations will be defined by reciprocal chemical genetics. Our experiments should result in a global understanding of MHC class II antigen presentation. In addition, it should reveal target-lead combinations for manipulation of MHC class II antigen presentation in infection, auto-immune disease and transplantation.
Max ERC Funding
2 112 300 €
Duration
Start date: 2010-09-01, End date: 2015-08-31
Project acronym MICROBESINSIDE
Project Exploitation of Our Intestinal Microbiota
Researcher (PI) Willem Meindert De Vos
Host Institution (HI) WAGENINGEN UNIVERSITY
Country Netherlands
Call Details Advanced Grant (AdG), LS9, ERC-2009-AdG
Summary Our intestinal tract is colonized by a myriad of microbes that exceed our body cells in number and coding capacity and have important metabolic and signaling functions. Analysis of the diversity of these microbes inside revealed more than 1000 species, some of which have developed intimate interactions that are operating at the mucus interface separating the intestinal and microbial cells. Notably, we sustain and stimulate these interactions by feeding our microbes inside by the production of large amounts of mucus that equal the undigested components of our diet in caloric value. The understanding of the mucosal interactions is of great importance as they affect our immune system, signal to the brain-gut axis and provide a protective barrier against pathogens. Hence, this project aims to obtain fundamental understanding in the diversity and function of our microbes inside with a focus on mucus-binding bacteria that are either indigenous in the human intestine or ingested as part of our diet. The project will capitalize on (i) the recently developed high-throughput functional (meta)genomics approaches for human subjects, (ii) the genomic characterization of the mucus-degrading species Akkermansia muciniphila, an emerging biomarker for a healthy intestine, and (iii) the genome-driven discovery that the paradigm probiotic, Lactobacillus rhamnosus GG (LGG), contains cell-wall extended pili that strongly bind mucus and signal to human cells. A novel screening system will allow isolation of LGG derivatives with altered mucus-binding that will be instrumental in cause effect and other mechanistic studies. Moreover, the results will contribute to detailed insight in how our microbes inside develop mutualistic interactions, allowing for the design of new food-based approaches.
Summary
Our intestinal tract is colonized by a myriad of microbes that exceed our body cells in number and coding capacity and have important metabolic and signaling functions. Analysis of the diversity of these microbes inside revealed more than 1000 species, some of which have developed intimate interactions that are operating at the mucus interface separating the intestinal and microbial cells. Notably, we sustain and stimulate these interactions by feeding our microbes inside by the production of large amounts of mucus that equal the undigested components of our diet in caloric value. The understanding of the mucosal interactions is of great importance as they affect our immune system, signal to the brain-gut axis and provide a protective barrier against pathogens. Hence, this project aims to obtain fundamental understanding in the diversity and function of our microbes inside with a focus on mucus-binding bacteria that are either indigenous in the human intestine or ingested as part of our diet. The project will capitalize on (i) the recently developed high-throughput functional (meta)genomics approaches for human subjects, (ii) the genomic characterization of the mucus-degrading species Akkermansia muciniphila, an emerging biomarker for a healthy intestine, and (iii) the genome-driven discovery that the paradigm probiotic, Lactobacillus rhamnosus GG (LGG), contains cell-wall extended pili that strongly bind mucus and signal to human cells. A novel screening system will allow isolation of LGG derivatives with altered mucus-binding that will be instrumental in cause effect and other mechanistic studies. Moreover, the results will contribute to detailed insight in how our microbes inside develop mutualistic interactions, allowing for the design of new food-based approaches.
Max ERC Funding
2 499 000 €
Duration
Start date: 2010-06-01, End date: 2015-05-31
Project acronym MLG
Project Causes and Consequences of Multilevel Governance
Researcher (PI) Gary Marks
Host Institution (HI) STICHTING VU
Country Netherlands
Call Details Advanced Grant (AdG), SH2, ERC-2009-AdG
Summary This five-year research programme is motivated by the question: Why does the structure of government vary, and how does this affect the quality of democracy and governance? The programme estimates and explains the scope and depth of authority exercised by subnational governments and international governmental organizations (IGOs) from 1950 to 2010. This will allow deeper understanding of a major policy development multilevel governance, the dispersion of authority away from central states to subnational and supranational levels. While major institutions, including the World Bank, the European Parliament, and European Commission recommend multilevel governance, some policy analysts claim that multilevel governance exacerbates corruption, leads to gridlock, engenders moral hazard, constrains redistribution, obfuscates accountability, and wastes money. However, comparative information about how international and subnational government varies across countries and over time is lacking, and so it is not possible to discipline normative claims against evidence. The contribution of the research programme is threefold. First, it provides carefully constructed, comparative, and reliable estimates of subnational and international government for a wide range of countries over an extended time period. Second, it seeks to advance understanding of the causes of multilevel governance, building on the major theories in the field. Third, it provides a rigorous assessment of the consequences of multilevel governance. Theories of the causes and consequences of multilevel governance will be evaluated quantitatively and in a case study of government response to climate change.
Summary
This five-year research programme is motivated by the question: Why does the structure of government vary, and how does this affect the quality of democracy and governance? The programme estimates and explains the scope and depth of authority exercised by subnational governments and international governmental organizations (IGOs) from 1950 to 2010. This will allow deeper understanding of a major policy development multilevel governance, the dispersion of authority away from central states to subnational and supranational levels. While major institutions, including the World Bank, the European Parliament, and European Commission recommend multilevel governance, some policy analysts claim that multilevel governance exacerbates corruption, leads to gridlock, engenders moral hazard, constrains redistribution, obfuscates accountability, and wastes money. However, comparative information about how international and subnational government varies across countries and over time is lacking, and so it is not possible to discipline normative claims against evidence. The contribution of the research programme is threefold. First, it provides carefully constructed, comparative, and reliable estimates of subnational and international government for a wide range of countries over an extended time period. Second, it seeks to advance understanding of the causes of multilevel governance, building on the major theories in the field. Third, it provides a rigorous assessment of the consequences of multilevel governance. Theories of the causes and consequences of multilevel governance will be evaluated quantitatively and in a case study of government response to climate change.
Max ERC Funding
2 478 807 €
Duration
Start date: 2010-05-01, End date: 2015-04-30
Project acronym MORPHOSTASIS
Project Morphostasis of the intestinal mucosa and it's deregulation in cancer and inflammation
Researcher (PI) Gijs Van Den Brink
Host Institution (HI) ACADEMISCH MEDISCH CENTRUM BIJ DE UNIVERSITEIT VAN AMSTERDAM
Country Netherlands
Call Details Starting Grant (StG), LS4, ERC-2009-StG
Summary Stem cells at the base of the intestinal crypts are in a dynamic equilibrium with their differentiated derivatives. Homeostatic equilibria depend on the presence of negative feedback loops. The role of the Wnt signaling pathway as a driver of epithelial stem cell self renewal and proliferation in the intestine has been relatively well characterized. Much less is known about the negative feedback signals that must exist to control stem cell behavior and the way these may be deregulated in disease. We found that Indian hedgehog is secreted by differentiated intestinal epithelial cells and acts as a negative feedback signal. Hedgehog signaling acts as a break on Wnt signaling in intestinal precursor cells via a secondary signal in the mesenchyme. We will use conditional mutant mice, our large biobank of patient materials and in vitro experiments to further characterize the signals involved in this feedback loop. Our objective is to study the role of this epithelial mesenchymal signaling circuit in the normal intestine and examine the way it is deregulated in intestinal cancer development and inflammation.
Summary
Stem cells at the base of the intestinal crypts are in a dynamic equilibrium with their differentiated derivatives. Homeostatic equilibria depend on the presence of negative feedback loops. The role of the Wnt signaling pathway as a driver of epithelial stem cell self renewal and proliferation in the intestine has been relatively well characterized. Much less is known about the negative feedback signals that must exist to control stem cell behavior and the way these may be deregulated in disease. We found that Indian hedgehog is secreted by differentiated intestinal epithelial cells and acts as a negative feedback signal. Hedgehog signaling acts as a break on Wnt signaling in intestinal precursor cells via a secondary signal in the mesenchyme. We will use conditional mutant mice, our large biobank of patient materials and in vitro experiments to further characterize the signals involved in this feedback loop. Our objective is to study the role of this epithelial mesenchymal signaling circuit in the normal intestine and examine the way it is deregulated in intestinal cancer development and inflammation.
Max ERC Funding
1 524 462 €
Duration
Start date: 2009-10-01, End date: 2014-09-30
Project acronym MULTI-SCALE FLOWS
Project Multi-scale modeling of mass and heat transfer in dense gas-solid flows
Researcher (PI) Johannes Alfonsius Maria Kuipers
Host Institution (HI) TECHNISCHE UNIVERSITEIT EINDHOVEN
Country Netherlands
Call Details Advanced Grant (AdG), PE8, ERC-2009-AdG
Summary Dense gas-solid flows have been the subject of intense research over the past decades, owing to its wealth of scientifically interesting phenomena, as well as to its direct relevance for innumerable industrial applications. Dense gas solid flows are notoriously complex and its phenomena difficult to predict. This finds its origin in the large separation of relevant scales: particle-particle and particle-gas interactions at the microscale (< 1 mm) dictate the phenomena that occur at the macroscale (> 1 meter), the fundamental understanding of which poses a huge challenge for both the scientific and technological community. This proposal is aimed at providing a comprehensive understanding of large-scale dense gas-solid flow based on first principles, that is, based on the exchange of mass, momentum and heat at the surface of the individual solid particles, below the millimeter scale. To this end, we employ a multi-scale approach, where the gas-solid flow is described by three different models. Such an approach is by now widely recognized as the most rigorous and viable pathway to obtain a full understanding of dense-gas solid flow, and has become very topical in chemical engineering science. The unique aspect of this proposal is the scale and the comprehensiveness of the research: we want to consider, for the first time, the exchange of heat, momentum and energy, and the effects of polydispersity, heterogeneity, and domain geometries, at all three levels of modeling, and validated by one-to-one experiments. These generated insight and models will be extremely relevant for the design and scale-up of industrial equipment involving dispersed particulate flow, which is currently a fully empirical process, involving expensive and time-consuming experimentation.
Summary
Dense gas-solid flows have been the subject of intense research over the past decades, owing to its wealth of scientifically interesting phenomena, as well as to its direct relevance for innumerable industrial applications. Dense gas solid flows are notoriously complex and its phenomena difficult to predict. This finds its origin in the large separation of relevant scales: particle-particle and particle-gas interactions at the microscale (< 1 mm) dictate the phenomena that occur at the macroscale (> 1 meter), the fundamental understanding of which poses a huge challenge for both the scientific and technological community. This proposal is aimed at providing a comprehensive understanding of large-scale dense gas-solid flow based on first principles, that is, based on the exchange of mass, momentum and heat at the surface of the individual solid particles, below the millimeter scale. To this end, we employ a multi-scale approach, where the gas-solid flow is described by three different models. Such an approach is by now widely recognized as the most rigorous and viable pathway to obtain a full understanding of dense-gas solid flow, and has become very topical in chemical engineering science. The unique aspect of this proposal is the scale and the comprehensiveness of the research: we want to consider, for the first time, the exchange of heat, momentum and energy, and the effects of polydispersity, heterogeneity, and domain geometries, at all three levels of modeling, and validated by one-to-one experiments. These generated insight and models will be extremely relevant for the design and scale-up of industrial equipment involving dispersed particulate flow, which is currently a fully empirical process, involving expensive and time-consuming experimentation.
Max ERC Funding
2 500 000 €
Duration
Start date: 2010-03-01, End date: 2015-02-28
Project acronym PROZYMES
Project Bridging Between Organocatalysis and Biocatalysis: The Powerful Enamine Mechanism of Organocatalysts Engineered into the Tautomerase Superfamily Scaffold
Researcher (PI) Gerrit Jan Poelarends
Host Institution (HI) RIJKSUNIVERSITEIT GRONINGEN
Country Netherlands
Call Details Starting Grant (StG), LS9, ERC-2009-StG
Summary Proline and related secondary amines were found to be efficient organocatalysts of aldol, alkylation, Michael addition, and other challenging bond-forming reactions. The design of even more efficient systems that would allow extending this remarkable catalytic strategy to a useful and environmentally benign synthetic methodology would be highly desirable. This proposal aims to develop a new class of biocatalysts that use the powerful proline-based enamine mechanism of organocatalysts but that take advantage of the water solubility and stereochemical control available with enzymes. As a scaffold for engineering, we will exploit the active-site template of the tautomerase superfamily proteins, the only known group of enzymes that has the unique feature of using a N-terminal proline in catalysis. By systematically screening tautomerases for promiscuous carbonyl transformation activities, we aim to demonstrate that Pro-1 residues within these tautomerases can react with carbonyl compounds to give enamine intermediates, and thus may facilitate various bond-forming reactions. The most promising enzymes will be used in directed evolution experiments to enhance the desired activities to a practical level. For this, new screening and selection methods will be developed that allow the efficient passage through protein sequence space. Furthermore, unnatural secondary amines will be introduced by total chemical synthesis. In this way, we envision to generate superior biocatalysts for carbon-carbon bond-forming reactions. The idea of using a protein scaffold in which a catalytic proline is present as nucleophile and that has a unique reactivity to form enamines would be a completely new approach to making carbon-carbon bonds. It does not copy something in Nature, but is based on the synthetic requirements of the desired bond-forming reactions. I believe that this type of approach is the future of enzyme engineering and is the key to more application of biocatalysis in industry.
Summary
Proline and related secondary amines were found to be efficient organocatalysts of aldol, alkylation, Michael addition, and other challenging bond-forming reactions. The design of even more efficient systems that would allow extending this remarkable catalytic strategy to a useful and environmentally benign synthetic methodology would be highly desirable. This proposal aims to develop a new class of biocatalysts that use the powerful proline-based enamine mechanism of organocatalysts but that take advantage of the water solubility and stereochemical control available with enzymes. As a scaffold for engineering, we will exploit the active-site template of the tautomerase superfamily proteins, the only known group of enzymes that has the unique feature of using a N-terminal proline in catalysis. By systematically screening tautomerases for promiscuous carbonyl transformation activities, we aim to demonstrate that Pro-1 residues within these tautomerases can react with carbonyl compounds to give enamine intermediates, and thus may facilitate various bond-forming reactions. The most promising enzymes will be used in directed evolution experiments to enhance the desired activities to a practical level. For this, new screening and selection methods will be developed that allow the efficient passage through protein sequence space. Furthermore, unnatural secondary amines will be introduced by total chemical synthesis. In this way, we envision to generate superior biocatalysts for carbon-carbon bond-forming reactions. The idea of using a protein scaffold in which a catalytic proline is present as nucleophile and that has a unique reactivity to form enamines would be a completely new approach to making carbon-carbon bonds. It does not copy something in Nature, but is based on the synthetic requirements of the desired bond-forming reactions. I believe that this type of approach is the future of enzyme engineering and is the key to more application of biocatalysis in industry.
Max ERC Funding
2 000 000 €
Duration
Start date: 2010-05-01, End date: 2015-04-30
Project acronym REPEATSASMUTATORS
Project The biological role of tandem repeats as hypervariable modules in genomes
Researcher (PI) Kevin Joan Verstrepen
Host Institution (HI) VIB VZW
Country Belgium
Call Details Starting Grant (StG), LS2, ERC-2009-StG
Summary Living organisms change and evolve because of mutations in their DNA. Recent findings suggest that some DNA sequences are hypervariable and evolvable , while others are extremely robust and remain constant over evolutionary timescales. The long-term goal of our research is to combine theory and experiments to investigate the molecular mechanisms underlying genetic robustness and evolvability. Apart from the fundamental aspects, we also plan to explore practical facets, including swift evolution of pathogens and construction of hypervariable modules for synthetic biology. In this proposal we focus on one specific topic, namely the role of tandem repeats as hypervariable modules in genomes. Tandem repeats are short DNA sequences that are repeated head-to-tail. Such repeats have traditionally been considered as non-functional junk DNA and they are therefore mostly ignored. However, our ongoing research shows that tandem repeats often occur in coding and regulatory sequences. The repeats show mutation rates that are 10 to 10.000 fold higher than mutation rates in the rest of the genome. These frequent mutations alter the function and/or expression of genes, allowing organisms to swiftly adapt to novel environments. Hence, repeats may be a common mechanism for organisms to generate potentially beneficial variability in certain regions of the genome, while keeping other regions stable and robust (Rando and Verstrepen, Cell 128: 655; Verstrepen et al., Nature Genetics 37: 986; Verstrepen et al., Nature Microbiol. 2: 15). We propose a multidisciplinary systems approach to unravel the biological role of repeats. First, we will use bioinformatics to screen various model genomes and identify, categorize and analyze all tandem repeat loci in the model eukaryote Saccharomyces cerevisiae. Using this data, we will select a subset of repeats and apply experimental techniques to investigate the functional consequences of mutations in these repeats.
Summary
Living organisms change and evolve because of mutations in their DNA. Recent findings suggest that some DNA sequences are hypervariable and evolvable , while others are extremely robust and remain constant over evolutionary timescales. The long-term goal of our research is to combine theory and experiments to investigate the molecular mechanisms underlying genetic robustness and evolvability. Apart from the fundamental aspects, we also plan to explore practical facets, including swift evolution of pathogens and construction of hypervariable modules for synthetic biology. In this proposal we focus on one specific topic, namely the role of tandem repeats as hypervariable modules in genomes. Tandem repeats are short DNA sequences that are repeated head-to-tail. Such repeats have traditionally been considered as non-functional junk DNA and they are therefore mostly ignored. However, our ongoing research shows that tandem repeats often occur in coding and regulatory sequences. The repeats show mutation rates that are 10 to 10.000 fold higher than mutation rates in the rest of the genome. These frequent mutations alter the function and/or expression of genes, allowing organisms to swiftly adapt to novel environments. Hence, repeats may be a common mechanism for organisms to generate potentially beneficial variability in certain regions of the genome, while keeping other regions stable and robust (Rando and Verstrepen, Cell 128: 655; Verstrepen et al., Nature Genetics 37: 986; Verstrepen et al., Nature Microbiol. 2: 15). We propose a multidisciplinary systems approach to unravel the biological role of repeats. First, we will use bioinformatics to screen various model genomes and identify, categorize and analyze all tandem repeat loci in the model eukaryote Saccharomyces cerevisiae. Using this data, we will select a subset of repeats and apply experimental techniques to investigate the functional consequences of mutations in these repeats.
Max ERC Funding
1 753 527 €
Duration
Start date: 2009-12-01, End date: 2014-11-30
Project acronym SELSWEEP
Project Molecular characterization of genetic factors in the pig under selection during speciation, domestication and breeding
Researcher (PI) Martinus Antonius Mathilda Groenen
Host Institution (HI) WAGENINGEN UNIVERSITY
Country Netherlands
Call Details Advanced Grant (AdG), LS9, ERC-2009-AdG
Summary I will analyze the changes in the genome of the pig during speciation, domestication and selection at the molecular level. Domestication and selection have resulted in a large number of distinct breeds worldwide with very distinct characteristics. Unique are also the availability of 12 closely related pig species that have diverged over a time span of 1 to 10 million years. Furthermore, the availability of a high quality genome sequence of the pig by the end of 2009 and the recent advances in next generation sequencing technology makes the SelSweep proposal extremely timely. Within the SelSweep project I will explore the genes and genomic regions that are and have been under strong selection during speciation, early domestication and during subsequent development of specific breeds in the pig. The results of the project will substantially advance our knowledge of evolutionary biology at the molecular level. Moreover, knowledge about the genes affected by selection opens up new directions for further improvement of this important livestock species. The direct sequencing of individuals from a variety of populations using next generation sequencing enables an unbiased capture of the full breadth of genetic variation in the porcine genome addressing both single nucleotide polymorphisms (SNPs) as well as copy number variants (CNVs). The analysis will be done using a previously established porcine HapMap population consisting of domestic breeds from China, Europe and the US, wild boar populations from across the world as well as museum samples representing ancient pig populations. Also included in the panel are other Suidae enabling the identification of the ancestral alleles further strengthening the identification of selective sweeps in the porcine genome.
Summary
I will analyze the changes in the genome of the pig during speciation, domestication and selection at the molecular level. Domestication and selection have resulted in a large number of distinct breeds worldwide with very distinct characteristics. Unique are also the availability of 12 closely related pig species that have diverged over a time span of 1 to 10 million years. Furthermore, the availability of a high quality genome sequence of the pig by the end of 2009 and the recent advances in next generation sequencing technology makes the SelSweep proposal extremely timely. Within the SelSweep project I will explore the genes and genomic regions that are and have been under strong selection during speciation, early domestication and during subsequent development of specific breeds in the pig. The results of the project will substantially advance our knowledge of evolutionary biology at the molecular level. Moreover, knowledge about the genes affected by selection opens up new directions for further improvement of this important livestock species. The direct sequencing of individuals from a variety of populations using next generation sequencing enables an unbiased capture of the full breadth of genetic variation in the porcine genome addressing both single nucleotide polymorphisms (SNPs) as well as copy number variants (CNVs). The analysis will be done using a previously established porcine HapMap population consisting of domestic breeds from China, Europe and the US, wild boar populations from across the world as well as museum samples representing ancient pig populations. Also included in the panel are other Suidae enabling the identification of the ancestral alleles further strengthening the identification of selective sweeps in the porcine genome.
Max ERC Funding
2 496 381 €
Duration
Start date: 2010-03-01, End date: 2015-02-28
Project acronym SHARES
Project Shared Responsibility in International Law
Researcher (PI) Peter Andreas Nollkaemper
Host Institution (HI) UNIVERSITEIT VAN AMSTERDAM
Country Netherlands
Call Details Advanced Grant (AdG), SH2, ERC-2009-AdG
Summary SHARES seeks to rethink the allocation of international responsibilities in cases where actors cooperate to pursue common international objectives, for example environmental protection and protection of human populations from mass atrocities. International cooperation may complicate attempts to determine who is responsible for what. SHARES is based on the unrecognized and unexplored fact that as the responsibility for policies is shared among more actors, the discrete responsibility of every individual actor is diminished proportionately. International cooperation paradoxically may undermine the key objectives of any scheme of responsibility : the protection of the international rule of law and the provision of remedies of injured parties. The dominant principle of individual responsibility, and the scholarship based on it, provides us neither with the concepts nor the perspectives for addressing shared responsibilities. SHARES will uncover the extent and nature of the problem of scattering of international responsibilities in cases of international cooperation and will provide fresh perspectives on how cooperation can be better matched by a corresponding system of international responsibility. It will pursue two interlocking tracks, focussing on principles and processes of international responsibility. As to principles, it will examine the possibility of holding multiple actors collectively, jointly or proportionately responsible. As to processes, SHARES will rethink how (quasi-)judicial processes may better taken into account the collective context of the international policies of states and other actors. SHARES will complement a conceptual and theoretical foundation with a thorough empirical approach, exploring through case-studies how we can improve our understanding of the principles and processes that are needed to match the unprecedented international cooperation with a proper system of shared responsibility.
Summary
SHARES seeks to rethink the allocation of international responsibilities in cases where actors cooperate to pursue common international objectives, for example environmental protection and protection of human populations from mass atrocities. International cooperation may complicate attempts to determine who is responsible for what. SHARES is based on the unrecognized and unexplored fact that as the responsibility for policies is shared among more actors, the discrete responsibility of every individual actor is diminished proportionately. International cooperation paradoxically may undermine the key objectives of any scheme of responsibility : the protection of the international rule of law and the provision of remedies of injured parties. The dominant principle of individual responsibility, and the scholarship based on it, provides us neither with the concepts nor the perspectives for addressing shared responsibilities. SHARES will uncover the extent and nature of the problem of scattering of international responsibilities in cases of international cooperation and will provide fresh perspectives on how cooperation can be better matched by a corresponding system of international responsibility. It will pursue two interlocking tracks, focussing on principles and processes of international responsibility. As to principles, it will examine the possibility of holding multiple actors collectively, jointly or proportionately responsible. As to processes, SHARES will rethink how (quasi-)judicial processes may better taken into account the collective context of the international policies of states and other actors. SHARES will complement a conceptual and theoretical foundation with a thorough empirical approach, exploring through case-studies how we can improve our understanding of the principles and processes that are needed to match the unprecedented international cooperation with a proper system of shared responsibility.
Max ERC Funding
2 113 949 €
Duration
Start date: 2010-05-01, End date: 2015-10-31
Project acronym SUSY
Project SUPERSYMMETRY: a window to non-perturbative physics
Researcher (PI) Bernardus Quirinus Petrus Joseph De Wit
Host Institution (HI) STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN
Country Netherlands
Call Details Advanced Grant (AdG), PE2, ERC-2009-AdG
Summary Supersymmetry provides an invaluable tool for quantitatively exploring a large variety of non-perturbative phenomena arising in gauge theories and gravitation. This proposal intends to exploit this fact to make significant progress on three important topics in theoretical physics, namely, black holes, strongly-coupled gauge fields, and instantons and supersymmetry breaking. Besides supersymmetry, there is a variety of cross-links between these topics, as well as joint applications. The specific objectives of the proposal are as follows. The first objective concerns the determination of supersymmetric black hole entropy for finite electric and magnetic charges, improving our understanding of critical aspects of the field-theoretic description of the entropy, in direct confrontation with the results based on the counting of microscopic states. The second objective is a construction of the exact spectrum of quantum strings moving in an anti-de Sitter space-time, which, according to the gauge-string correspondence, yields the spectrum of a corresponding dual supersymmetric gauge theory. Deforming the anti-de Sitter space will then lead to stringy descriptions of non-perturbative phenomena in a generic gauge theory with a confining phase. The third objective pertains to instantons and their implications for phenomenologically viable string compactifications on spaces with generalized geometries, which include background electric and magnetic fields. An instanton calculus will be developed to improve the understanding of non-perturbative string theory and its implication for moduli stabilization and supersymmetry breaking.
Summary
Supersymmetry provides an invaluable tool for quantitatively exploring a large variety of non-perturbative phenomena arising in gauge theories and gravitation. This proposal intends to exploit this fact to make significant progress on three important topics in theoretical physics, namely, black holes, strongly-coupled gauge fields, and instantons and supersymmetry breaking. Besides supersymmetry, there is a variety of cross-links between these topics, as well as joint applications. The specific objectives of the proposal are as follows. The first objective concerns the determination of supersymmetric black hole entropy for finite electric and magnetic charges, improving our understanding of critical aspects of the field-theoretic description of the entropy, in direct confrontation with the results based on the counting of microscopic states. The second objective is a construction of the exact spectrum of quantum strings moving in an anti-de Sitter space-time, which, according to the gauge-string correspondence, yields the spectrum of a corresponding dual supersymmetric gauge theory. Deforming the anti-de Sitter space will then lead to stringy descriptions of non-perturbative phenomena in a generic gauge theory with a confining phase. The third objective pertains to instantons and their implications for phenomenologically viable string compactifications on spaces with generalized geometries, which include background electric and magnetic fields. An instanton calculus will be developed to improve the understanding of non-perturbative string theory and its implication for moduli stabilization and supersymmetry breaking.
Max ERC Funding
1 910 093 €
Duration
Start date: 2010-09-01, End date: 2016-08-31
Project acronym TROFOCLIM
Project Tropical forests and climate change: understanding links to predict future responses
Researcher (PI) Pieter Alle Zuidema
Host Institution (HI) WAGENINGEN UNIVERSITY
Country Netherlands
Call Details Starting Grant (StG), LS8, ERC-2009-StG
Summary Tropical forests cover just 7% of the Earth s surface, but store 25% of the global terrestrial carbon pool. Since they are so rich in carbon, net loss or uptake of carbon by tropical forests has important implications for atmospheric CO2 levels. Thus, tropical forests can speed up climate change by net emission of CO2 or slow it down by net sequestration. The rise in atmospheric CO2 level since the onset of the Industrial Revolution and the resulting climatic changes have certainly affected tropical forest dynamics. Understanding the impacts of these changes so far is crucial to predict future responses. Recent studies have shown that tropical forests have acted as carbon sinks over the last decades. However, it is unclear whether these forests have accumulated biomass already over the longer periods of time during which CO2 levels have risen and climate has changed. It is also unknown what has caused the observed biomass increase. The proposed study has the objective to detect, explain and predict long-term climate change effects on tropical tree dynamics. To this end, I will apply three techniques which are new to this field: tree ring analysis, stable isotope measurements and tree growth modelling. This is the first pan-tropical study that analyses centennial-scale tree growth. The study will be conducted at three sites (Bolivia, Cameroon, Thailand) and includes 15 tree species. I will test for gradual changes in long-term tree growth using tree ring data. Stable isotopes (C, O) will be measured to reconstruct past climate and detect responses to CO2 rise. The influence of changes in forest dynamics on tree growth will also be assessed. Finally, I will develop and apply physiological tree growth models and population models to unravel the complex interactive effects of climatic changes, CO2 rise and light climate on tree growth and population dynamics.
Summary
Tropical forests cover just 7% of the Earth s surface, but store 25% of the global terrestrial carbon pool. Since they are so rich in carbon, net loss or uptake of carbon by tropical forests has important implications for atmospheric CO2 levels. Thus, tropical forests can speed up climate change by net emission of CO2 or slow it down by net sequestration. The rise in atmospheric CO2 level since the onset of the Industrial Revolution and the resulting climatic changes have certainly affected tropical forest dynamics. Understanding the impacts of these changes so far is crucial to predict future responses. Recent studies have shown that tropical forests have acted as carbon sinks over the last decades. However, it is unclear whether these forests have accumulated biomass already over the longer periods of time during which CO2 levels have risen and climate has changed. It is also unknown what has caused the observed biomass increase. The proposed study has the objective to detect, explain and predict long-term climate change effects on tropical tree dynamics. To this end, I will apply three techniques which are new to this field: tree ring analysis, stable isotope measurements and tree growth modelling. This is the first pan-tropical study that analyses centennial-scale tree growth. The study will be conducted at three sites (Bolivia, Cameroon, Thailand) and includes 15 tree species. I will test for gradual changes in long-term tree growth using tree ring data. Stable isotopes (C, O) will be measured to reconstruct past climate and detect responses to CO2 rise. The influence of changes in forest dynamics on tree growth will also be assessed. Finally, I will develop and apply physiological tree growth models and population models to unravel the complex interactive effects of climatic changes, CO2 rise and light climate on tree growth and population dynamics.
Max ERC Funding
1 729 200 €
Duration
Start date: 2010-02-01, End date: 2015-01-31
Project acronym TUMETABO
Project Glycolytic contribution to cancer growth and metastasis
Researcher (PI) Pierre Sonveaux
Host Institution (HI) UNIVERSITE CATHOLIQUE DE LOUVAIN
Country Belgium
Call Details Starting Grant (StG), LS4, ERC-2009-StG
Summary Cancer lethality is most often associated to occurrence of distant metastases. To grow and become aggressive, cancers may undergo 2 critical adaptations: the glycolytic switch, corresponding to uncoupling glycolysis from the tricarboxylic acid (TCA) cycle, and the angiogenic switch, promoting neovascularization. In this high risk/high gain research program, we propose that the glycolytic switch precedes and promotes angiogenesis and metastatic dissemination in most types of cancer. We further envision that lactate, the end product of glycolysis, interfaces glycolysis and the latter processes through activation of hypoxia-inducible factor HIF-1. A thorough characterization of the molecular pathway(s) initiated by lactate (using transcriptomic, gene silencing, enzymatic and pharmacological interventions) has the potential to unravel new therapeutic targets that would simultaneously inhibit the consequences of the glycolytic switch on cancer aggressiveness. We anticipate the plasma membrane lactate transporters of the (sodium) monocarboxylate transporter (S)MCT family to be key determinants of autocrine and paracrine lactate signaling in cancer. Modulation of their activity or expression (notably by the generation of (S)MCT knock out mice) could thus profoundly affect tumor angiogenesis and metastasis. Since hypoxia is a hallmark of cancer and glycolysis its direct consequence in cancer cells surviving to hypoxia, the findings could have important consequences for the treatment of virtually all types of cancers. It could also impact our understanding of other pathologies, such as wound healing and heart infarction, in which the interplay between glycolysis, HIF-1 activation and angiogenesis could play a critical role.
Summary
Cancer lethality is most often associated to occurrence of distant metastases. To grow and become aggressive, cancers may undergo 2 critical adaptations: the glycolytic switch, corresponding to uncoupling glycolysis from the tricarboxylic acid (TCA) cycle, and the angiogenic switch, promoting neovascularization. In this high risk/high gain research program, we propose that the glycolytic switch precedes and promotes angiogenesis and metastatic dissemination in most types of cancer. We further envision that lactate, the end product of glycolysis, interfaces glycolysis and the latter processes through activation of hypoxia-inducible factor HIF-1. A thorough characterization of the molecular pathway(s) initiated by lactate (using transcriptomic, gene silencing, enzymatic and pharmacological interventions) has the potential to unravel new therapeutic targets that would simultaneously inhibit the consequences of the glycolytic switch on cancer aggressiveness. We anticipate the plasma membrane lactate transporters of the (sodium) monocarboxylate transporter (S)MCT family to be key determinants of autocrine and paracrine lactate signaling in cancer. Modulation of their activity or expression (notably by the generation of (S)MCT knock out mice) could thus profoundly affect tumor angiogenesis and metastasis. Since hypoxia is a hallmark of cancer and glycolysis its direct consequence in cancer cells surviving to hypoxia, the findings could have important consequences for the treatment of virtually all types of cancers. It could also impact our understanding of other pathologies, such as wound healing and heart infarction, in which the interplay between glycolysis, HIF-1 activation and angiogenesis could play a critical role.
Max ERC Funding
1 493 320 €
Duration
Start date: 2009-12-01, End date: 2014-11-30
Project acronym UBIQUITIN BALANCE
Project The balance of ubiquitin conjugation and deconjugation
Researcher (PI) Titia Karen Sixma
Host Institution (HI) STICHTING HET NEDERLANDS KANKER INSTITUUT-ANTONI VAN LEEUWENHOEK ZIEKENHUIS
Country Netherlands
Call Details Advanced Grant (AdG), LS1, ERC-2009-AdG
Summary Ubiquitin conjugation is one of the most important signaling systems in the eukaryotic cell. Different types of mono- and polyubiquitin chains determine the fate of target proteins by redirecting them for degradation, relocalization or interaction with new partners. The type of ubiquitin modification on any target is determined by the interplay between the conjugating E2/E3 complexes on the one hand and deubiquitinating enzymes on the other. In practice, it is the balance between conjugating and deconjugating systems that determines the result of the various ubiquitination signals. For three different regulatory systems that are critical for correct genome maintenance, we are now in a position to study not just the individual process of conjugation or deconjugation in isolation, but rather, reconstitute the entire reaction on a defined physiological target. These three target systems, histone H2A, PCNA and P53, can be mono-ubiquitinated by a defined E3-ligase, poly-ubiquitinated by a second ligase and deconjugated by defined deubiquitinating enzymes in a reaction that is affected by known allosteric modulators. Our unique collection of tools to study these systems in vitro allows reconstitution of the full reaction, to trap intermediates, and to study their interaction from atomic detail to kinetic reactivity. Using X-ray crystallography of critical intermediates and kinetic analysis of individual reactions by FRET and surface plasmon resonance, we can address how the mono-, poly and deubiquitinating reactions affect each other. By answering mechanistic questions on the relative effect of the forward and backward reaction components and their modulators we will provide a solid basis for drug design studies that target these pathways against cancer development.
Summary
Ubiquitin conjugation is one of the most important signaling systems in the eukaryotic cell. Different types of mono- and polyubiquitin chains determine the fate of target proteins by redirecting them for degradation, relocalization or interaction with new partners. The type of ubiquitin modification on any target is determined by the interplay between the conjugating E2/E3 complexes on the one hand and deubiquitinating enzymes on the other. In practice, it is the balance between conjugating and deconjugating systems that determines the result of the various ubiquitination signals. For three different regulatory systems that are critical for correct genome maintenance, we are now in a position to study not just the individual process of conjugation or deconjugation in isolation, but rather, reconstitute the entire reaction on a defined physiological target. These three target systems, histone H2A, PCNA and P53, can be mono-ubiquitinated by a defined E3-ligase, poly-ubiquitinated by a second ligase and deconjugated by defined deubiquitinating enzymes in a reaction that is affected by known allosteric modulators. Our unique collection of tools to study these systems in vitro allows reconstitution of the full reaction, to trap intermediates, and to study their interaction from atomic detail to kinetic reactivity. Using X-ray crystallography of critical intermediates and kinetic analysis of individual reactions by FRET and surface plasmon resonance, we can address how the mono-, poly and deubiquitinating reactions affect each other. By answering mechanistic questions on the relative effect of the forward and backward reaction components and their modulators we will provide a solid basis for drug design studies that target these pathways against cancer development.
Max ERC Funding
2 299 720 €
Duration
Start date: 2010-02-01, End date: 2015-01-31