Project acronym 2DNanoSpec
Project Nanoscale Vibrational Spectroscopy of Sensitive 2D Molecular Materials
Researcher (PI) Renato ZENOBI
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary I propose to investigate the nanometer scale organization of delicate 2-dimensional molecular materials using nanoscale vibrational spectroscopy. 2D structures are of great scientific and technological importance, for example as novel materials (graphene, MoS2, WS2, etc.), and in the form of biological membranes and synthetic 2D-polymers. Powerful methods for their analysis and imaging with molecular selectivity and sufficient spatial resolution, however, are lacking. Tip-enhanced Raman spectroscopy (TERS) allows label-free spectroscopic identification of molecular species, with ≈10 nm spatial resolution, and with single molecule sensitivity for strong Raman scatterers. So far, however, TERS is not being carried out in liquids, which is the natural environment for membranes, and its application to poor Raman scatterers such as components of 2D polymers, lipids, or other membrane compounds (proteins, sugars) is difficult. TERS has the potential to overcome the restrictions of other optical/spectroscopic methods to study 2D materials, namely (i) insufficient spatial resolution of diffraction-limited optical methods; (ii) the need for labelling for all methods relying on fluorescence; and (iii) the inability of some methods to work in liquids. I propose to address a number of scientific questions associated with the spatial organization, and the occurrence of defects in sensitive 2D molecular materials. The success of these studies will also rely critically on technical innovations of TERS that notably address the problem of energy dissipation. This will for the first time allow its application to study of complex, delicate 2D molecular systems without photochemical damage.
Summary
I propose to investigate the nanometer scale organization of delicate 2-dimensional molecular materials using nanoscale vibrational spectroscopy. 2D structures are of great scientific and technological importance, for example as novel materials (graphene, MoS2, WS2, etc.), and in the form of biological membranes and synthetic 2D-polymers. Powerful methods for their analysis and imaging with molecular selectivity and sufficient spatial resolution, however, are lacking. Tip-enhanced Raman spectroscopy (TERS) allows label-free spectroscopic identification of molecular species, with ≈10 nm spatial resolution, and with single molecule sensitivity for strong Raman scatterers. So far, however, TERS is not being carried out in liquids, which is the natural environment for membranes, and its application to poor Raman scatterers such as components of 2D polymers, lipids, or other membrane compounds (proteins, sugars) is difficult. TERS has the potential to overcome the restrictions of other optical/spectroscopic methods to study 2D materials, namely (i) insufficient spatial resolution of diffraction-limited optical methods; (ii) the need for labelling for all methods relying on fluorescence; and (iii) the inability of some methods to work in liquids. I propose to address a number of scientific questions associated with the spatial organization, and the occurrence of defects in sensitive 2D molecular materials. The success of these studies will also rely critically on technical innovations of TERS that notably address the problem of energy dissipation. This will for the first time allow its application to study of complex, delicate 2D molecular systems without photochemical damage.
Max ERC Funding
2 311 696 €
Duration
Start date: 2017-09-01, End date: 2022-08-31
Project acronym CartiLube
Project Lubricating Cartilage: exploring the relation between lubrication and gene-regulation to alleviate osteoarthritis
Researcher (PI) Jacob KLEIN
Host Institution (HI) WEIZMANN INSTITUTE OF SCIENCE
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary Can we exploit insights from the remarkably lubricated surfaces of articular cartilage, to create lubricants that may alleviate osteoarthritis (OA), the most widespread joint disease, affecting millions? These, succinctly, are the challenges of the present proposal. They are driven by our recent finding that lubrication of destabilised joints leads to changes in gene-regulation of the cartilage-embedded chondrocytes to protect against development of the disease. OA alleviation is known to arise through orthopedically suppressing shear-stresses on the cartilage, and a central premise of this project is that, by reducing friction at the articulating cartilage through suitable lubrication, we may achieve the same beneficial effect on the disease. The objectives of this project are to better understand the origins of cartilage boundary lubrication through examination of friction-reduction by its main molecular components, and exploit that understanding to create lubricants that, on intra-articular injection, will lubricate cartilage sufficiently well to achieve alleviation of OA via gene regulation. The project will examine, via both nanotribometric and macroscopic measurements, how the main molecular species implicated in cartilage lubrication, lipids, hyaluronan and lubricin, and their combinations, act together to form optimally lubricating boundary layers on model surfaces as well as on excised cartilage. Based on this, we shall develop suitable materials to lubricate cartilage in joints, using mouse models. Lubricants will further be optimized with respect to their retention in the joint and cartilage targeting, both in model studies and in vivo. The effect of the lubricants in regulating gene expression, in reducing pain and cartilage degradation, and in promoting stem-cell adhesion to the cartilage will be studied in a mouse model in which OA has been induced. Our results will have implications for treatment of a common, debilitating disease.
Summary
Can we exploit insights from the remarkably lubricated surfaces of articular cartilage, to create lubricants that may alleviate osteoarthritis (OA), the most widespread joint disease, affecting millions? These, succinctly, are the challenges of the present proposal. They are driven by our recent finding that lubrication of destabilised joints leads to changes in gene-regulation of the cartilage-embedded chondrocytes to protect against development of the disease. OA alleviation is known to arise through orthopedically suppressing shear-stresses on the cartilage, and a central premise of this project is that, by reducing friction at the articulating cartilage through suitable lubrication, we may achieve the same beneficial effect on the disease. The objectives of this project are to better understand the origins of cartilage boundary lubrication through examination of friction-reduction by its main molecular components, and exploit that understanding to create lubricants that, on intra-articular injection, will lubricate cartilage sufficiently well to achieve alleviation of OA via gene regulation. The project will examine, via both nanotribometric and macroscopic measurements, how the main molecular species implicated in cartilage lubrication, lipids, hyaluronan and lubricin, and their combinations, act together to form optimally lubricating boundary layers on model surfaces as well as on excised cartilage. Based on this, we shall develop suitable materials to lubricate cartilage in joints, using mouse models. Lubricants will further be optimized with respect to their retention in the joint and cartilage targeting, both in model studies and in vivo. The effect of the lubricants in regulating gene expression, in reducing pain and cartilage degradation, and in promoting stem-cell adhesion to the cartilage will be studied in a mouse model in which OA has been induced. Our results will have implications for treatment of a common, debilitating disease.
Max ERC Funding
2 499 944 €
Duration
Start date: 2017-09-01, End date: 2022-08-31
Project acronym CICERO
Project Cold Ion Chemistry - Experiments within a Rydberg Orbit
Researcher (PI) Frédéric MERKT
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary "To date no experiment has investigated ion-molecule reactions at temperatures significantly below about 20 K, for two reasons: (i) Cooling the translational and internal degrees of freedom of ions and molecules is extremely challenging. (ii) Even very weak stray electric fields accelerate the ions. A potential difference of only 1 mV across the reaction volume imparts a kinetic energy of 1 meV to ions, which corresponds to a temperature of about 12 K. Quantum mechanical effects arising from the translational and the frozen or hindered rotational motion of the reactants in the intermolecular potential are only expected to be significant below 20 K and have therefore not been observed yet in ion-molecule reactions, even for reactions involving the lightest ions and molecules. This proposal aims at developing a new experimental method to study ion-molecule reactions at temperatures down to 100 mK and to study ion-molecule reactions involving light species, with particular emphasis placed on the observation and quantification of quantum effects in low-temperature ion-molecule chemistry. To reach this goal, we will study the ion-molecule reactions within the orbit of a highly excited Rydberg electron, which will shield the reaction from stray fields without affecting its outcome. To reach very low collision energies, we will use a merged-beam approach relying on a surface-electrode Rydberg-Stark deflector. In the preparatory phase of this proposal, we have carried out a proof-of-principle measurement of the H2+ + H2 -> H3+ + H reaction below 1 K using a simplified version of the ""ideal"" instrument and demonstrated the feasibility of our method. We now plan to exploit the full potential of our new approach and study important ion-molecule reactions in a temperature range thought until now to be experimentally inaccessible."
Summary
"To date no experiment has investigated ion-molecule reactions at temperatures significantly below about 20 K, for two reasons: (i) Cooling the translational and internal degrees of freedom of ions and molecules is extremely challenging. (ii) Even very weak stray electric fields accelerate the ions. A potential difference of only 1 mV across the reaction volume imparts a kinetic energy of 1 meV to ions, which corresponds to a temperature of about 12 K. Quantum mechanical effects arising from the translational and the frozen or hindered rotational motion of the reactants in the intermolecular potential are only expected to be significant below 20 K and have therefore not been observed yet in ion-molecule reactions, even for reactions involving the lightest ions and molecules. This proposal aims at developing a new experimental method to study ion-molecule reactions at temperatures down to 100 mK and to study ion-molecule reactions involving light species, with particular emphasis placed on the observation and quantification of quantum effects in low-temperature ion-molecule chemistry. To reach this goal, we will study the ion-molecule reactions within the orbit of a highly excited Rydberg electron, which will shield the reaction from stray fields without affecting its outcome. To reach very low collision energies, we will use a merged-beam approach relying on a surface-electrode Rydberg-Stark deflector. In the preparatory phase of this proposal, we have carried out a proof-of-principle measurement of the H2+ + H2 -> H3+ + H reaction below 1 K using a simplified version of the ""ideal"" instrument and demonstrated the feasibility of our method. We now plan to exploit the full potential of our new approach and study important ion-molecule reactions in a temperature range thought until now to be experimentally inaccessible."
Max ERC Funding
2 130 088 €
Duration
Start date: 2017-06-01, End date: 2022-05-31
Project acronym CIMNAS
Project Corrosion Initiation Mechanisms at the Nanometric/Atomic Scale
Researcher (PI) Philippe MARCUS
Host Institution (HI) CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary The failure of metallic materials caused by corrosion strongly impacts our society with cost, safety, health and performance issues. The mechanisms of corrosion propagation are fairly well understood, and various means of mitigation are known even if research is still necessary to improve this knowledge or to develop corrosion protection for the application of new materials. The vision of CIMNAS is that a major breakthrough for corrosion protection lies in a deep understanding and control of the initiation stage triggering corrosion. Corrosion initiation takes place at the atomic/molecular scale or at a scale of a few nanometres (the nanoscale) on metal and alloy surfaces, metallic, oxidised or coated, and interacting with the corroding environment. The mission of CIMNAS is to challenge the difficulty of understanding corrosion initiation at the nanometric/atomic scale on such complex interfaces, ultimately aiming at designing more robust metallic surfaces via the understanding of corrosion mechanisms. The project is constructed on new ideas to achieve three knowledge breakthroughs, each answering a key question for the understanding of corrosion initiation on metal and alloy surfaces. It is envisioned that the model approach used and the achieved breakthroughs will open up a new horizon for research on corrosion initiation mechanisms at the nanoscale, and new opportunities for a knowledge-based design of novel corrosion protection technologies. Technologies presently at low TRL (Technology Readiness Level) will benefit from these breakthroughs. Resources will include a team of highly experienced and recognised researchers headed by the PI, a unique apparatus recently installed at the PI’s lab, integrating surface spectroscopy, microscopy, and electrochemistry for in situ measurements in a closed system, novel experimental approaches, and a strong complementarity of experiments and modelling.
Summary
The failure of metallic materials caused by corrosion strongly impacts our society with cost, safety, health and performance issues. The mechanisms of corrosion propagation are fairly well understood, and various means of mitigation are known even if research is still necessary to improve this knowledge or to develop corrosion protection for the application of new materials. The vision of CIMNAS is that a major breakthrough for corrosion protection lies in a deep understanding and control of the initiation stage triggering corrosion. Corrosion initiation takes place at the atomic/molecular scale or at a scale of a few nanometres (the nanoscale) on metal and alloy surfaces, metallic, oxidised or coated, and interacting with the corroding environment. The mission of CIMNAS is to challenge the difficulty of understanding corrosion initiation at the nanometric/atomic scale on such complex interfaces, ultimately aiming at designing more robust metallic surfaces via the understanding of corrosion mechanisms. The project is constructed on new ideas to achieve three knowledge breakthroughs, each answering a key question for the understanding of corrosion initiation on metal and alloy surfaces. It is envisioned that the model approach used and the achieved breakthroughs will open up a new horizon for research on corrosion initiation mechanisms at the nanoscale, and new opportunities for a knowledge-based design of novel corrosion protection technologies. Technologies presently at low TRL (Technology Readiness Level) will benefit from these breakthroughs. Resources will include a team of highly experienced and recognised researchers headed by the PI, a unique apparatus recently installed at the PI’s lab, integrating surface spectroscopy, microscopy, and electrochemistry for in situ measurements in a closed system, novel experimental approaches, and a strong complementarity of experiments and modelling.
Max ERC Funding
1 657 056 €
Duration
Start date: 2017-09-01, End date: 2021-08-31
Project acronym CLUNATRA
Project Discovering new Catalysts in the Cluster-Nanoparticle Transition Regime
Researcher (PI) Ib CHORKENDORFF
Host Institution (HI) DANMARKS TEKNISKE UNIVERSITET
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary The purpose of this proposal is to establish new fundamental insight of the reactivity and thereby the catalytic activity of oxides, nitrides, phosphides and sulfides (O-, N-, P-, S- ides) in the Cluster-Nanoparticle transition regime. We will use this insight to develop new catalysts through an interactive loop involving DFT simulations, synthesis, characterization and activity testing. The overarching objective is to make new catalysts that are efficient for production of solar fuels and chemicals to facilitate the implementation of sustainable energy, e.g. electrochemical hydrogen production and reduction of CO2 and N2 through both electrochemical and thermally activated processes.
Recent research has identified why there is a lack of significant progress in developing new more active catalysts. Chemical scaling-relations exist among the intermediates, making it difficult to find a reaction pathway, which provides a flat potential energy landscape - a necessity for making the reaction proceed without large losses. My hypothesis is that going away from the conventional size regime, > 2 nm, one may break such chemical scaling-relations. Non-scalable behavior means that adding an atom results in a completely different reactivity. This drastic change could be even further enhanced if the added atom is a different element than the recipient particle, providing new freedom to control the reaction pathway. The methodology will be based on setting up a specifically optimized instrument for synthesizing such mass-selected clusters/nanoparticles. Thus far, researchers have barely explored this size regime. Only a limited amount of studies has been devoted to inorganic entities of oxides and sulfides; nitrides and phosphides are completely unexplored. We will employ atomic level simulations, synthesis, characterization, and subsequently test for specific reactions. This interdisciplinary loop will result in new breakthroughs in the area of catalyst material discovery.
Summary
The purpose of this proposal is to establish new fundamental insight of the reactivity and thereby the catalytic activity of oxides, nitrides, phosphides and sulfides (O-, N-, P-, S- ides) in the Cluster-Nanoparticle transition regime. We will use this insight to develop new catalysts through an interactive loop involving DFT simulations, synthesis, characterization and activity testing. The overarching objective is to make new catalysts that are efficient for production of solar fuels and chemicals to facilitate the implementation of sustainable energy, e.g. electrochemical hydrogen production and reduction of CO2 and N2 through both electrochemical and thermally activated processes.
Recent research has identified why there is a lack of significant progress in developing new more active catalysts. Chemical scaling-relations exist among the intermediates, making it difficult to find a reaction pathway, which provides a flat potential energy landscape - a necessity for making the reaction proceed without large losses. My hypothesis is that going away from the conventional size regime, > 2 nm, one may break such chemical scaling-relations. Non-scalable behavior means that adding an atom results in a completely different reactivity. This drastic change could be even further enhanced if the added atom is a different element than the recipient particle, providing new freedom to control the reaction pathway. The methodology will be based on setting up a specifically optimized instrument for synthesizing such mass-selected clusters/nanoparticles. Thus far, researchers have barely explored this size regime. Only a limited amount of studies has been devoted to inorganic entities of oxides and sulfides; nitrides and phosphides are completely unexplored. We will employ atomic level simulations, synthesis, characterization, and subsequently test for specific reactions. This interdisciplinary loop will result in new breakthroughs in the area of catalyst material discovery.
Max ERC Funding
2 500 000 €
Duration
Start date: 2017-09-01, End date: 2022-08-31
Project acronym CoupledNC
Project Coupled Nanocrystal Molecules: Quantum coupling effects via chemical coupling of colloidal nanocrystals
Researcher (PI) Uri BANIN
Host Institution (HI) THE HEBREW UNIVERSITY OF JERUSALEM
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary Coupling of atoms is the basis of chemistry, yielding the beauty and richness of molecules and materials. Herein I introduce nanocrystal chemistry: the use of semiconductor nanocrystals (NCs) as artificial atoms to form NC molecules that are chemically, structurally and physically coupled. The unique emergent quantum mechanical consequences of the NCs coupling will be studied and tailored to yield a chemical-quantum palette: coherent coupling of NC exciton states; dual color single photon emitters functional also as photo-switchable chromophores in super-resolution fluorescence microscopy; electrically switchable single NC photon emitters for utilization as taggants for neuronal activity and as chromophores in displays; new NC structures for lasing; and coupled quasi-1D NC chains manifesting mini-band formation, and tailored for a quantum-cascade effect for IR photon emission. A novel methodology of controlled oriented attachment of NC building blocks (in particular of core/shell NCs) will be presented to realize the coupled NCs molecules. For this a new type of Janus NC building block will be developed, and used as an element in a Lego-type construction of double quantum dots (dimers), heterodimers coupling two different types of NCs, and more complex NC coupled quantum structures. To realize this NC chemistry approach, surface control is essential, which will be achieved via investigation of the chemical and dynamical properties of the NCs surface ligands layer. As outcome I can expect to decipher NCs surface chemistry and dynamics, including its size dependence, and to introduce Janus NCs with chemically distinct and selectively modified surface faces. From this I will develop a new step-wise approach for synthesis of coupled NCs molecules and reveal the consequences of quantum coupling in them. This will inspire theoretical and further experimental work and will set the stage for the development of the diverse potential applications of coupled NC molecules.
Summary
Coupling of atoms is the basis of chemistry, yielding the beauty and richness of molecules and materials. Herein I introduce nanocrystal chemistry: the use of semiconductor nanocrystals (NCs) as artificial atoms to form NC molecules that are chemically, structurally and physically coupled. The unique emergent quantum mechanical consequences of the NCs coupling will be studied and tailored to yield a chemical-quantum palette: coherent coupling of NC exciton states; dual color single photon emitters functional also as photo-switchable chromophores in super-resolution fluorescence microscopy; electrically switchable single NC photon emitters for utilization as taggants for neuronal activity and as chromophores in displays; new NC structures for lasing; and coupled quasi-1D NC chains manifesting mini-band formation, and tailored for a quantum-cascade effect for IR photon emission. A novel methodology of controlled oriented attachment of NC building blocks (in particular of core/shell NCs) will be presented to realize the coupled NCs molecules. For this a new type of Janus NC building block will be developed, and used as an element in a Lego-type construction of double quantum dots (dimers), heterodimers coupling two different types of NCs, and more complex NC coupled quantum structures. To realize this NC chemistry approach, surface control is essential, which will be achieved via investigation of the chemical and dynamical properties of the NCs surface ligands layer. As outcome I can expect to decipher NCs surface chemistry and dynamics, including its size dependence, and to introduce Janus NCs with chemically distinct and selectively modified surface faces. From this I will develop a new step-wise approach for synthesis of coupled NCs molecules and reveal the consequences of quantum coupling in them. This will inspire theoretical and further experimental work and will set the stage for the development of the diverse potential applications of coupled NC molecules.
Max ERC Funding
2 499 750 €
Duration
Start date: 2017-11-01, End date: 2022-10-31
Project acronym EEC
Project Economic Engineering of Cooperation in Modern Markets
Researcher (PI) Axel OCKENFELS
Host Institution (HI) UNIVERSITAET ZU KOELN
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary Cooperation is essential for the functioning of the economy and society. Thus, with inappropriate mechanisms to harness self-interest by aligning it with the common good, the outcome of social and economic interaction can be bleak and even catastrophic.
Recent advances in computer technology lead to radical innovation in market design and trading strategies. This creates both, new challenges and exciting opportunities for “engineering cooperation”. This project uses the economic engineering approach (as advocated by Alvin Roth) to address some of the most pressing cooperation problems of modern markets and societies.
I propose three work packages, each using innovative experimental methods and (behavioral) game theory in order to address a specific challenge:
The first one studies the design of electronic reputation mechanisms that promote cooperation in the digital world. Previous research has shown that mechanisms to promote trust on the Internet are flawed. Yet, there is little empirical and normative guidance on how to repair these systems, and engineer better ones.
The second studies the design of mechanisms that avoid arms races for speed in real-time financial and electricity market trading. Traders use algorithmic sniping strategies, even when they are collectively wasteful and seriously threatening market liquidity and stability. Yet, little is known about the robust properties of alternative market designs to eliminate sniping.
The third one studies how to design modern markets that align with ethical considerations. People sometimes have a distaste for certain kinds of modern transactions, such as reciprocal kidney exchange and buying pollution rights. Yet, little is known about the underlying nature and robustness of this distaste.
My project will generate important knowledge to improve the functioning of modern markets, and at the same time open new horizons in the sciences of cooperation and of “behavioral economic engineering”.
Summary
Cooperation is essential for the functioning of the economy and society. Thus, with inappropriate mechanisms to harness self-interest by aligning it with the common good, the outcome of social and economic interaction can be bleak and even catastrophic.
Recent advances in computer technology lead to radical innovation in market design and trading strategies. This creates both, new challenges and exciting opportunities for “engineering cooperation”. This project uses the economic engineering approach (as advocated by Alvin Roth) to address some of the most pressing cooperation problems of modern markets and societies.
I propose three work packages, each using innovative experimental methods and (behavioral) game theory in order to address a specific challenge:
The first one studies the design of electronic reputation mechanisms that promote cooperation in the digital world. Previous research has shown that mechanisms to promote trust on the Internet are flawed. Yet, there is little empirical and normative guidance on how to repair these systems, and engineer better ones.
The second studies the design of mechanisms that avoid arms races for speed in real-time financial and electricity market trading. Traders use algorithmic sniping strategies, even when they are collectively wasteful and seriously threatening market liquidity and stability. Yet, little is known about the robust properties of alternative market designs to eliminate sniping.
The third one studies how to design modern markets that align with ethical considerations. People sometimes have a distaste for certain kinds of modern transactions, such as reciprocal kidney exchange and buying pollution rights. Yet, little is known about the underlying nature and robustness of this distaste.
My project will generate important knowledge to improve the functioning of modern markets, and at the same time open new horizons in the sciences of cooperation and of “behavioral economic engineering”.
Max ERC Funding
1 155 104 €
Duration
Start date: 2018-03-01, End date: 2023-02-28
Project acronym ELECTRA
Project Electrochemically induced Asymmetry: from materials to molecules and back
Researcher (PI) Alexander KUHN
Host Institution (HI) INSTITUT POLYTECHNIQUE DE BORDEAUX
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary Asymmetry is a very common feature of many systems, objects and molecules, that we use in our daily life. Actually, it is in a majority of cases the absolutely crucial ingredient for conferring a useful property to a system, a prominent example being the chiral nature of pharmaceutically active compounds. Chemists have developed various approaches to generate asymmetry, from the molecular to the macroscopic scale, but are still facing major challenges when exploring efficient alternative physico-chemical concepts for symmetry breaking. The global aim of ELECTRA is to propose so far unexplored and versatile strategies, based on the unconventional use of electrochemical phenomena, to generate asymmetry in chemical systems at different length scales.
Investigating simultaneously wired and wireless electrochemistry will open up unique possibilities for advancing the topic of asymmetry generation in an original and cross-disciplinary way. We will determine the utility of these strategies in the frame of two major challenges that are:
-unconventional detection, separation and synthesis of enantiomers, based on chiral encoded metal phases, very recently pioneered by us;
-design and characterization of Janus systems with complex structures and reactivity
Carefully designed experiments at the forefront of electrochemical science will first enable us to gain a better understanding of the different mechanisms involved in symmetry breaking. An optimization by exploring new concepts with respect to their efficiency, yield and selectivity is the next step. This will prepare for the choice of the most innovative approaches of symmetry breaking, in view of the numerous highly relevant applications, ranging from analysis to catalysis and energy conversion. Furthermore, due to the interdisciplinary character of asymmetry, the findings of this project will not only have a major impact in various areas of chemistry, but will also be very interesting for physics and biology.
Summary
Asymmetry is a very common feature of many systems, objects and molecules, that we use in our daily life. Actually, it is in a majority of cases the absolutely crucial ingredient for conferring a useful property to a system, a prominent example being the chiral nature of pharmaceutically active compounds. Chemists have developed various approaches to generate asymmetry, from the molecular to the macroscopic scale, but are still facing major challenges when exploring efficient alternative physico-chemical concepts for symmetry breaking. The global aim of ELECTRA is to propose so far unexplored and versatile strategies, based on the unconventional use of electrochemical phenomena, to generate asymmetry in chemical systems at different length scales.
Investigating simultaneously wired and wireless electrochemistry will open up unique possibilities for advancing the topic of asymmetry generation in an original and cross-disciplinary way. We will determine the utility of these strategies in the frame of two major challenges that are:
-unconventional detection, separation and synthesis of enantiomers, based on chiral encoded metal phases, very recently pioneered by us;
-design and characterization of Janus systems with complex structures and reactivity
Carefully designed experiments at the forefront of electrochemical science will first enable us to gain a better understanding of the different mechanisms involved in symmetry breaking. An optimization by exploring new concepts with respect to their efficiency, yield and selectivity is the next step. This will prepare for the choice of the most innovative approaches of symmetry breaking, in view of the numerous highly relevant applications, ranging from analysis to catalysis and energy conversion. Furthermore, due to the interdisciplinary character of asymmetry, the findings of this project will not only have a major impact in various areas of chemistry, but will also be very interesting for physics and biology.
Max ERC Funding
2 415 849 €
Duration
Start date: 2017-09-01, End date: 2022-08-31
Project acronym Epiherigans
Project Writing, reading and managing stress with H3K9me
Researcher (PI) Susan GASSER
Host Institution (HI) FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH FONDATION
Call Details Advanced Grant (AdG), LS2, ERC-2016-ADG
Summary Epigenetic inheritance is the transmission of information, generally in the form of DNA methylation or post-translational modifications on histones that regulate the availability of underlying genetic information for transcription. RNA itself feeds back to contribute to histone modification. Sequence accessibility is both a matter of folding the chromatin fibre to alter access to recognition motifs, and the local concentration of factors needed for efficient transcriptional initiation, elongation, termination or mRNA stability. In heterochromatin we find a subset of regulatory factors in carefully balanced concentrations that are maintained in part by the segregation of active and inactive domains. Histone H3 K9 methylation is key to this compartmentation.
C. elegans provides an ideal system in which to study chromatin-based gene repression. We have demonstrated that histone H3 K9 methylation is the essential signal for the sequestration of heterochromatin at the nuclear envelope in C. elegans. The recognition of H3K9me1/2/3 by an inner nuclear envelope-bound chromodomain protein, CEC-4, actively sequesters heterochromatin in embryos, and contributes redundantly in adult tissues.
Epiherigans has the ambitious goal to determine definitively what targets H3K9 methylation, and identify its physiological roles. We will examine how this mark contributes to the epigenetic recognition of repeat vs non-repeat sequence, and mediates a stress-induced response to oxidative damage. We will examine the link between these and the spatial clustering of heterochromatic domains. Epiherigans will develop an integrated approach to identify in vivo the factors that distinguish repeats from non-repeats, self from non-self within genomes and will examine how H3K9me contributes to a persistent ROS or DNA damage stress response. It represents a crucial step towards understanding of how our genomes use heterochromatin to modulate, stabilize and transmit chromatin organization.
Summary
Epigenetic inheritance is the transmission of information, generally in the form of DNA methylation or post-translational modifications on histones that regulate the availability of underlying genetic information for transcription. RNA itself feeds back to contribute to histone modification. Sequence accessibility is both a matter of folding the chromatin fibre to alter access to recognition motifs, and the local concentration of factors needed for efficient transcriptional initiation, elongation, termination or mRNA stability. In heterochromatin we find a subset of regulatory factors in carefully balanced concentrations that are maintained in part by the segregation of active and inactive domains. Histone H3 K9 methylation is key to this compartmentation.
C. elegans provides an ideal system in which to study chromatin-based gene repression. We have demonstrated that histone H3 K9 methylation is the essential signal for the sequestration of heterochromatin at the nuclear envelope in C. elegans. The recognition of H3K9me1/2/3 by an inner nuclear envelope-bound chromodomain protein, CEC-4, actively sequesters heterochromatin in embryos, and contributes redundantly in adult tissues.
Epiherigans has the ambitious goal to determine definitively what targets H3K9 methylation, and identify its physiological roles. We will examine how this mark contributes to the epigenetic recognition of repeat vs non-repeat sequence, and mediates a stress-induced response to oxidative damage. We will examine the link between these and the spatial clustering of heterochromatic domains. Epiherigans will develop an integrated approach to identify in vivo the factors that distinguish repeats from non-repeats, self from non-self within genomes and will examine how H3K9me contributes to a persistent ROS or DNA damage stress response. It represents a crucial step towards understanding of how our genomes use heterochromatin to modulate, stabilize and transmit chromatin organization.
Max ERC Funding
2 500 000 €
Duration
Start date: 2017-06-01, End date: 2022-05-31
Project acronym EUROPOPULISM
Project European Integration, Populism and European Cities
Researcher (PI) Guido Enrico TABELLINI
Host Institution (HI) UNIVERSITA COMMERCIALE LUIGI BOCCONI
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary Why is it so difficult to achieve further European political integration? This question motivates the first part of the project. The standard approach in economics presumes that integration of countries reflects a tradeoff between economic benefits and the cost of cultural heterogeneity. To assess this tradeoff, we exploit survey data to quantify cultural heterogeneity within and between EU countries, comparing it to the US. We also investigate time variation, to assess whether economic integration led to cultural convergence. Finally, exploiting regional variation, we seek to identify a cultural core and compare it to the economic core of the EU. We conjecture the following conclusion: although European economic integration has not led to cultural convergence, the primary obstacle to integration is not cultural heterogeneity per se, but the presence of other barriers, such as national identities or national institutions, which amplify its effects.
The second part of the project studies the causes and implications of two related phenomena: the diffusion of nationalism and of political populism, with behavioral voters. We study nationalism as endogenous identification with one’s nation, and analyze how it interacts with political institutions and political processes in a setting of international policy coordination. We study populism as due to the reaction of disappointed voters who behave according to Prospect theory. Our main goal is to explain these behavioral phenomena, and to derive predictions about the effect of institutional reforms.
The third part of the project examines Europe in the very long run. It studies the formation of clusters of creative élites within Europe, in a historical perspective. The main goal is to explain how local self-government institutions and the migration of upper tail human capital between different European cities contributed to the formation of clusters of innovation and creativity in the XI-XIX centuries.
Summary
Why is it so difficult to achieve further European political integration? This question motivates the first part of the project. The standard approach in economics presumes that integration of countries reflects a tradeoff between economic benefits and the cost of cultural heterogeneity. To assess this tradeoff, we exploit survey data to quantify cultural heterogeneity within and between EU countries, comparing it to the US. We also investigate time variation, to assess whether economic integration led to cultural convergence. Finally, exploiting regional variation, we seek to identify a cultural core and compare it to the economic core of the EU. We conjecture the following conclusion: although European economic integration has not led to cultural convergence, the primary obstacle to integration is not cultural heterogeneity per se, but the presence of other barriers, such as national identities or national institutions, which amplify its effects.
The second part of the project studies the causes and implications of two related phenomena: the diffusion of nationalism and of political populism, with behavioral voters. We study nationalism as endogenous identification with one’s nation, and analyze how it interacts with political institutions and political processes in a setting of international policy coordination. We study populism as due to the reaction of disappointed voters who behave according to Prospect theory. Our main goal is to explain these behavioral phenomena, and to derive predictions about the effect of institutional reforms.
The third part of the project examines Europe in the very long run. It studies the formation of clusters of creative élites within Europe, in a historical perspective. The main goal is to explain how local self-government institutions and the migration of upper tail human capital between different European cities contributed to the formation of clusters of innovation and creativity in the XI-XIX centuries.
Max ERC Funding
1 276 250 €
Duration
Start date: 2017-10-01, End date: 2022-09-30
Project acronym FASTER
Project Faster magic-angle spinning leads to a resolution revolution in biological solid-state NMR
Researcher (PI) Beat Hugo Meier
Host Institution (HI) EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary Solid-state NMR has recently made a significant impact on structural biology by providing atomic-resolution structures of several, previously uncharacterized proteins. A particularly relevant example is the Amyloid-beta (Aβ) peptide linked to Alzheimer’s disease where we determined the atomic-resolution structure of Aβ(1-42) and of the Osaka mutant of Aβ(1-40).
A spectral resolution revolution is now in reach that will enable solid-state NMR to address new frontiers in structural biology. The applications mentioned above are based on 13C-detected spectroscopy. Proton-detected experiments, although clearly more sensitive thanks to the high gyromagnetic ratio of 1H, have found few applications so far, due to the poor resolution of 1H spectra caused by the 1H-1H dipolar interaction. The proton resolution can be enhanced by employing faster rotation of the sample, i.e. higher MAS (magic-angle spinning) frequencies. Presently accessible MAS frequencies are already faster than the ones of any other man-made object. A significant improvement is still attainable in our view. Increasing the MAS frequency to 200-250 kHz will improve the spectral quality to favorably compare with solution NMR for larger proteins, including fully protonated systems. In addition, the amount of sample required is reduced by almost two orders of magnitude, to approx. 100 μg, compared to the about 10 mg needed in 13C-detected experiments. This removes an important bottleneck in sample-preparation. The resolution and sensitivity gain will allow the structural characterization of e.g. disease-relevant amyloids or membrane proteins with higher precision. Moreover, this approach will enable the investigation of complex systems, which presently elude structural characterization. The resolution revolution brought about by fast spinning shall thus represent a breakthrough since it will open new horizons for solving urgent biological and medical questions.
Summary
Solid-state NMR has recently made a significant impact on structural biology by providing atomic-resolution structures of several, previously uncharacterized proteins. A particularly relevant example is the Amyloid-beta (Aβ) peptide linked to Alzheimer’s disease where we determined the atomic-resolution structure of Aβ(1-42) and of the Osaka mutant of Aβ(1-40).
A spectral resolution revolution is now in reach that will enable solid-state NMR to address new frontiers in structural biology. The applications mentioned above are based on 13C-detected spectroscopy. Proton-detected experiments, although clearly more sensitive thanks to the high gyromagnetic ratio of 1H, have found few applications so far, due to the poor resolution of 1H spectra caused by the 1H-1H dipolar interaction. The proton resolution can be enhanced by employing faster rotation of the sample, i.e. higher MAS (magic-angle spinning) frequencies. Presently accessible MAS frequencies are already faster than the ones of any other man-made object. A significant improvement is still attainable in our view. Increasing the MAS frequency to 200-250 kHz will improve the spectral quality to favorably compare with solution NMR for larger proteins, including fully protonated systems. In addition, the amount of sample required is reduced by almost two orders of magnitude, to approx. 100 μg, compared to the about 10 mg needed in 13C-detected experiments. This removes an important bottleneck in sample-preparation. The resolution and sensitivity gain will allow the structural characterization of e.g. disease-relevant amyloids or membrane proteins with higher precision. Moreover, this approach will enable the investigation of complex systems, which presently elude structural characterization. The resolution revolution brought about by fast spinning shall thus represent a breakthrough since it will open new horizons for solving urgent biological and medical questions.
Max ERC Funding
2 173 375 €
Duration
Start date: 2017-10-01, End date: 2022-09-30
Project acronym FIRMNET
Project Firms and Their Networks
Researcher (PI) Francis KRAMARZ
Host Institution (HI) CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary There is mounting evidence that firms are becoming more fragmented; production is less often made “in-house”. Firms buy inputs from abroad. Tasks are often split in parts. Some are offshored, others are subcontracted. Hence, firms buy services from other, local or international, firms. But they also supply inputs to other firms. Technical change, the internet, and globalization, all facilitate this transformation.
In order to better understand how firms thrive in the new global environment, the proposed research aims to construct a networks view of the firm. Fragmentation offers new opportunities: firms may specialize in what they make best, hence creating a business network of customers and suppliers. Networks are also useful to secure provision of fragmented tasks. The firms’ suppliers of goods and services – accountants, logisticians, consultants… -- may well be related to the firm through its workers’ social networks: family ties, boardroom relations… These social networks should be useful when times are tough -- board members could help find financing in banks where their schoolmates have a job – or when times are unusually good -- employees could help in spotting the right hires among their former co-workers.
The proposed research will focus on how firms social and business networks help firms to be resilient in the face of shocks. Resilience will be measured using the firms’ and workers’ outcomes – value-added, wages, employment, or occupations. The research will have a theoretical component using general equilibrium models with heterogeneous firms, an empirical component with unique data sources from at least two countries (France, Sweden), and an “econometric theory” component which will seek to develop techniques for the study of many-to-one matches in the presence of networks. The research will speak to the labor economics community but also to the international trade community, the management community, as well as the econometrics community.
Summary
There is mounting evidence that firms are becoming more fragmented; production is less often made “in-house”. Firms buy inputs from abroad. Tasks are often split in parts. Some are offshored, others are subcontracted. Hence, firms buy services from other, local or international, firms. But they also supply inputs to other firms. Technical change, the internet, and globalization, all facilitate this transformation.
In order to better understand how firms thrive in the new global environment, the proposed research aims to construct a networks view of the firm. Fragmentation offers new opportunities: firms may specialize in what they make best, hence creating a business network of customers and suppliers. Networks are also useful to secure provision of fragmented tasks. The firms’ suppliers of goods and services – accountants, logisticians, consultants… -- may well be related to the firm through its workers’ social networks: family ties, boardroom relations… These social networks should be useful when times are tough -- board members could help find financing in banks where their schoolmates have a job – or when times are unusually good -- employees could help in spotting the right hires among their former co-workers.
The proposed research will focus on how firms social and business networks help firms to be resilient in the face of shocks. Resilience will be measured using the firms’ and workers’ outcomes – value-added, wages, employment, or occupations. The research will have a theoretical component using general equilibrium models with heterogeneous firms, an empirical component with unique data sources from at least two countries (France, Sweden), and an “econometric theory” component which will seek to develop techniques for the study of many-to-one matches in the presence of networks. The research will speak to the labor economics community but also to the international trade community, the management community, as well as the econometrics community.
Max ERC Funding
1 753 288 €
Duration
Start date: 2017-09-01, End date: 2022-08-31
Project acronym GENSURGE
Project Designer recombinases for efficient and safe genome surgery
Researcher (PI) Frank Buchholz
Host Institution (HI) TECHNISCHE UNIVERSITAET DRESDEN
Call Details Advanced Grant (AdG), LS2, ERC-2016-ADG
Summary Recent breakthroughs in the field of genome editing provide a genuine opportunity to establish innovative
approaches to repair DNA mutations to replace, engineer or regenerate malfunctioning cells in vitro or in
vivo. However, most of the recently developed technologies introduce double-strand DNA breaks at a target
locus as the first step to gene correction. These breaks are subsequently repaired by one of the cell intrinsic
DNA repair pathways, typically inducing an abundance of insertions and deletions (indels). Ideally, for many
applications genome editing should, however, be efficient and specific, without the introduction of indels.
Site-specific recombinases (SSRs) allow precise genome editing without triggering endogenous DNA repair
pathways and possess the unique ability to fulfill both cleavage and immediate resealing of the processed
DNA in vivo. However, customizing the DNA binding specificity of SSRs is not straightforward. With this
project, we propose to solve this shortcoming. We have already demonstrated that by applying substrate-linked
directed evolution, SSRs can be generated that specifically recognize therapeutic targets. The
objective of this project is the development of a universal genome editing platform that allows flexible,
efficient and safe gene corrections in cells of any origin without triggering cell intrinsic DNA repair.
GenSurge aims to: i) sequence an unprecedented, comprehensive compendium of evolved SSRs to
understand the directed molecular evolution process at nucleotide resolution; ii) integrate the knowledge
obtained in i) to develop a unique SSR-based approach to correct genomic inversions; iii) develop a
universal SSR-based strategy that allows flawless, precise and safe genome editing to correct any gene defect
in human, animal or plant cells. The successful implementation of this project will deliver a comprehensive,
safe and efficient platform from which genome surgery-based cure strategies can be initiated.
Summary
Recent breakthroughs in the field of genome editing provide a genuine opportunity to establish innovative
approaches to repair DNA mutations to replace, engineer or regenerate malfunctioning cells in vitro or in
vivo. However, most of the recently developed technologies introduce double-strand DNA breaks at a target
locus as the first step to gene correction. These breaks are subsequently repaired by one of the cell intrinsic
DNA repair pathways, typically inducing an abundance of insertions and deletions (indels). Ideally, for many
applications genome editing should, however, be efficient and specific, without the introduction of indels.
Site-specific recombinases (SSRs) allow precise genome editing without triggering endogenous DNA repair
pathways and possess the unique ability to fulfill both cleavage and immediate resealing of the processed
DNA in vivo. However, customizing the DNA binding specificity of SSRs is not straightforward. With this
project, we propose to solve this shortcoming. We have already demonstrated that by applying substrate-linked
directed evolution, SSRs can be generated that specifically recognize therapeutic targets. The
objective of this project is the development of a universal genome editing platform that allows flexible,
efficient and safe gene corrections in cells of any origin without triggering cell intrinsic DNA repair.
GenSurge aims to: i) sequence an unprecedented, comprehensive compendium of evolved SSRs to
understand the directed molecular evolution process at nucleotide resolution; ii) integrate the knowledge
obtained in i) to develop a unique SSR-based approach to correct genomic inversions; iii) develop a
universal SSR-based strategy that allows flawless, precise and safe genome editing to correct any gene defect
in human, animal or plant cells. The successful implementation of this project will deliver a comprehensive,
safe and efficient platform from which genome surgery-based cure strategies can be initiated.
Max ERC Funding
2 380 425 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym GeroProtect
Project Developing Geroprotectors to Prevent Polymorbidity
Researcher (PI) Linda PARTRIDGE
Host Institution (HI) MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV
Call Details Advanced Grant (AdG), LS2, ERC-2016-ADG
Summary Advancing age is the major risk factor for disability and illness, including cardiovascular, metabolic and neu-rodegenerative disease and cancer. The increasing incidence of older people in European countries is posing major medical, social and economic challenges, and there is an urgent need to find ways of compressing late-life morbidity. Ageing has proved malleable to genetic and pharmacological interventions in laboratory animals, and at least some of the mechanisms are conserved over large evolutionary distances. Reduced activity of the nutrient-sensing insulin/insulin-like growth factor/TOR signalling network can increase health and combat ageing-related disease in laboratory animals, with increasing evidence of its importance in human ageing. There is thus a prospect for pharmacological intervention to prevent more than one ageing-related condition, rather than tackling diseases one by one and as they arise. The aim of this research programme is to evaluate the potential for pharmacological prevention of ageing-related decline in humans with a polypill targeting the nutrient-sensing network. We find that three licensed drugs, lithium, rapamycin and trametinib, act independently, at different nodes in the network, to increase lifespan in the fruitfly Drosophila, implying that the network controls more than one underlying mechanism of ageing, and that a polypill of these drugs could be particularly effective. We shall test this idea in mice, and assess the underlying mechanisms in Drosophila and mice. We have found that suppression of the Ras signalling branch of the network, which has a well known role in human cancer, can extend lifespan in both the fruitfly Drosophila and mice, and we shall assess its role in humans. Interventions that ameliorate ageing often have sex-specific effects, and we shall investigate the mechanisms leading to these for the nutrient-sensing network. The outputs of the work will inform future clinical trails in humans.
Summary
Advancing age is the major risk factor for disability and illness, including cardiovascular, metabolic and neu-rodegenerative disease and cancer. The increasing incidence of older people in European countries is posing major medical, social and economic challenges, and there is an urgent need to find ways of compressing late-life morbidity. Ageing has proved malleable to genetic and pharmacological interventions in laboratory animals, and at least some of the mechanisms are conserved over large evolutionary distances. Reduced activity of the nutrient-sensing insulin/insulin-like growth factor/TOR signalling network can increase health and combat ageing-related disease in laboratory animals, with increasing evidence of its importance in human ageing. There is thus a prospect for pharmacological intervention to prevent more than one ageing-related condition, rather than tackling diseases one by one and as they arise. The aim of this research programme is to evaluate the potential for pharmacological prevention of ageing-related decline in humans with a polypill targeting the nutrient-sensing network. We find that three licensed drugs, lithium, rapamycin and trametinib, act independently, at different nodes in the network, to increase lifespan in the fruitfly Drosophila, implying that the network controls more than one underlying mechanism of ageing, and that a polypill of these drugs could be particularly effective. We shall test this idea in mice, and assess the underlying mechanisms in Drosophila and mice. We have found that suppression of the Ras signalling branch of the network, which has a well known role in human cancer, can extend lifespan in both the fruitfly Drosophila and mice, and we shall assess its role in humans. Interventions that ameliorate ageing often have sex-specific effects, and we shall investigate the mechanisms leading to these for the nutrient-sensing network. The outputs of the work will inform future clinical trails in humans.
Max ERC Funding
2 500 000 €
Duration
Start date: 2017-12-01, End date: 2022-11-30
Project acronym HBEAM
Project Probing chemical dynamics at surfaces with ultrafast atom pulses
Researcher (PI) Alec MICHAEL WODTKE
Host Institution (HI) MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary Ultra-short light pulses have become invaluable in time-resolved studies in chemistry and physics. But many important processes are initiated by collisions. While lasers have revolutionized experiments using light pulses, experimentally proven concepts for producing ultra-short pulses of neutral matter are still in their infancy. Hence, our ability to control when a collision occurs is still extremely limited. Recently, we have reported bunch-compression photolysis, the first demonstrated method for producing ultra-short pulses of neutral matter. Here, photolysis of jet-cooled hydrogen iodide is carried out with femto-second laser pulses whose frequency bandwidth has been spatially ordered. Thus, fast H-atom photoproducts overtake slow ones, producing an ultra-short pulse.The central objective of this project is to develop bunch-compression photolysis as a tool for ultrafast timing experiments involving collisions of ultrashort pulses of H-atoms at synchronously photo-excited solid surfaces. Bunch-compression photolysis allows collisions at a surface to be synchronized with photoexcitation on the ps time scale, opening up new ways to study the dynamics of collisions at selectively photo-excited surfaces that have not yet relaxed. Studies on collision dynamics involving excitons produced in 2D semiconductors is one exciting direction for this work. Experiments on synchronized H atom collisions with vibrationally excited surfaces prepared by infrared photoexcitation is another - this enables kinetics experiments with surface site-specificity as well as the direct observation of reaction intermediates. The work and ideas presented here show how to overcome the most challenging barrier to a new class of time-resolved dynamics experiments, opening new frontiers in the study of surface chemistry, where we will begin to understand how selected degrees of freedom of the solid influence collision dynamics and reaction rates.
Summary
Ultra-short light pulses have become invaluable in time-resolved studies in chemistry and physics. But many important processes are initiated by collisions. While lasers have revolutionized experiments using light pulses, experimentally proven concepts for producing ultra-short pulses of neutral matter are still in their infancy. Hence, our ability to control when a collision occurs is still extremely limited. Recently, we have reported bunch-compression photolysis, the first demonstrated method for producing ultra-short pulses of neutral matter. Here, photolysis of jet-cooled hydrogen iodide is carried out with femto-second laser pulses whose frequency bandwidth has been spatially ordered. Thus, fast H-atom photoproducts overtake slow ones, producing an ultra-short pulse.The central objective of this project is to develop bunch-compression photolysis as a tool for ultrafast timing experiments involving collisions of ultrashort pulses of H-atoms at synchronously photo-excited solid surfaces. Bunch-compression photolysis allows collisions at a surface to be synchronized with photoexcitation on the ps time scale, opening up new ways to study the dynamics of collisions at selectively photo-excited surfaces that have not yet relaxed. Studies on collision dynamics involving excitons produced in 2D semiconductors is one exciting direction for this work. Experiments on synchronized H atom collisions with vibrationally excited surfaces prepared by infrared photoexcitation is another - this enables kinetics experiments with surface site-specificity as well as the direct observation of reaction intermediates. The work and ideas presented here show how to overcome the most challenging barrier to a new class of time-resolved dynamics experiments, opening new frontiers in the study of surface chemistry, where we will begin to understand how selected degrees of freedom of the solid influence collision dynamics and reaction rates.
Max ERC Funding
2 499 356 €
Duration
Start date: 2017-10-01, End date: 2022-09-30
Project acronym IntScOmics
Project A single-cell genomics approach integrating gene expression, lineage, and physical interactions
Researcher (PI) Alexander VAN OUDENAARDEN
Host Institution (HI) KONINKLIJKE NEDERLANDSE AKADEMIE VAN WETENSCHAPPEN - KNAW
Call Details Advanced Grant (AdG), LS2, ERC-2016-ADG
Summary From populations of unicellular organisms to complex tissues, cell-to-cell variability in phenotypic traits seems to be universal. To study this heterogeneity and its biological consequences, researchers have used advanced microscopy-based approaches that provide exquisite spatial and temporal resolution, but these methods are typically limited to measuring a few properties in parallel. On the other hand, next generation sequencing technologies allow for massively parallel genome-wide approaches but have, until recently, relied on studying population averages obtained from pooling thousands to millions of cells, precluding genome-wide analysis of cell-to-cell variability. Very excitingly, in the last few years there has been a revolution in single-cell sequencing technologies allowing genome-wide quantification of mRNA and genomic DNA in thousands of individual cells leading to the convergence of genomics and single-cell biology. However, during this convergence the spatial and temporal information, easily accessed by microscopy-based approaches, is often lost in a single-cell sequencing experiment. The overarching goal of this proposal is to develop single-cell sequencing technology that retains important aspects of the spatial-temporal information. In particular I will focus on integrating single-cell transcriptome and epigenome measurements with the physical cell-to-cell interaction network (spatial information) and lineage information (temporal information). These tools will be utilized to (i) explore the division symmetry of intestinal stem cells in vivo; (ii) to reconstruct the cell lineage history during zebrafish regeneration; and (iii) to determine lineage relations and the physical cell-to-cell interaction network of progenitor cells in the murine bone marrow.
Summary
From populations of unicellular organisms to complex tissues, cell-to-cell variability in phenotypic traits seems to be universal. To study this heterogeneity and its biological consequences, researchers have used advanced microscopy-based approaches that provide exquisite spatial and temporal resolution, but these methods are typically limited to measuring a few properties in parallel. On the other hand, next generation sequencing technologies allow for massively parallel genome-wide approaches but have, until recently, relied on studying population averages obtained from pooling thousands to millions of cells, precluding genome-wide analysis of cell-to-cell variability. Very excitingly, in the last few years there has been a revolution in single-cell sequencing technologies allowing genome-wide quantification of mRNA and genomic DNA in thousands of individual cells leading to the convergence of genomics and single-cell biology. However, during this convergence the spatial and temporal information, easily accessed by microscopy-based approaches, is often lost in a single-cell sequencing experiment. The overarching goal of this proposal is to develop single-cell sequencing technology that retains important aspects of the spatial-temporal information. In particular I will focus on integrating single-cell transcriptome and epigenome measurements with the physical cell-to-cell interaction network (spatial information) and lineage information (temporal information). These tools will be utilized to (i) explore the division symmetry of intestinal stem cells in vivo; (ii) to reconstruct the cell lineage history during zebrafish regeneration; and (iii) to determine lineage relations and the physical cell-to-cell interaction network of progenitor cells in the murine bone marrow.
Max ERC Funding
2 500 000 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym lending
Project Drivers of Growth in Bank Lending and Financial Crises
Researcher (PI) Steven ONGENA
Host Institution (HI) UNIVERSITAT ZURICH
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary Banking crises are thought to be recurrent phenomena that generally come on the heels of strong credit growth. Their damaging real effects have generated a broad agreement among academics and policymakers that financial regulation needs to tighten and to obtain a macroprudential dimension that aims to lessen the negative externalities from the financial to the macro real sector.
Among the main ingredients that are often mentioned to have played a role in the explosive growth of credit in the run-up to the latest financial crisis are the financial innovations by financial institutions, in particular loan securitization, the boom in mortgage lending and prices of real estate, the lack of information about prospective borrowers, and the high leverage (and corresponding low capital ratios) of financial institutions.
Yet, despite the singling out of these ingredients by policymakers, decisive empirical evidence about their role and relevancy is lacking. However, given the magnitude and complexity of the global banking system and the lack of encompassing micro-level data, it is currently impossible to confidently study the impact of all ingredients jointly. This project therefore analyses pertinent settings where we can empirically identify the correspondence between the aforementioned individual ingredients and the credit granting by financial institutions.
The objective of the project is to advance identification and estimation of the impact of each respective factor on loan growth by combining the appropriate methodology with an exceptional set of micro-level datasets. When missing in the literature a theoretical framework will be provided. The project further aims to assess how potential combinations of these ingredients may have interacted in spurring credit growth. While the identification of the impact of each ingredient on credit growth is paramount, the individual setting of the studied datasets and employed methodologies will ensure maximum external validity.
Summary
Banking crises are thought to be recurrent phenomena that generally come on the heels of strong credit growth. Their damaging real effects have generated a broad agreement among academics and policymakers that financial regulation needs to tighten and to obtain a macroprudential dimension that aims to lessen the negative externalities from the financial to the macro real sector.
Among the main ingredients that are often mentioned to have played a role in the explosive growth of credit in the run-up to the latest financial crisis are the financial innovations by financial institutions, in particular loan securitization, the boom in mortgage lending and prices of real estate, the lack of information about prospective borrowers, and the high leverage (and corresponding low capital ratios) of financial institutions.
Yet, despite the singling out of these ingredients by policymakers, decisive empirical evidence about their role and relevancy is lacking. However, given the magnitude and complexity of the global banking system and the lack of encompassing micro-level data, it is currently impossible to confidently study the impact of all ingredients jointly. This project therefore analyses pertinent settings where we can empirically identify the correspondence between the aforementioned individual ingredients and the credit granting by financial institutions.
The objective of the project is to advance identification and estimation of the impact of each respective factor on loan growth by combining the appropriate methodology with an exceptional set of micro-level datasets. When missing in the literature a theoretical framework will be provided. The project further aims to assess how potential combinations of these ingredients may have interacted in spurring credit growth. While the identification of the impact of each ingredient on credit growth is paramount, the individual setting of the studied datasets and employed methodologies will ensure maximum external validity.
Max ERC Funding
2 103 440 €
Duration
Start date: 2017-09-01, End date: 2022-08-31
Project acronym LTCSEI
Project Learning through Categories in Social and Economic Interactions
Researcher (PI) JEHIEL PHILIPPE
Host Institution (HI) ECOLE D'ECONOMIE DE PARIS
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary The analogy-based expectation equilibrium (Jehiel, 2005) has been introduced to cope with strategic environments in which agents form their expectations by bundling data that come from different sources (see also the valuation equilibrium defined in Jehiel and Samet, 2007). An essential next step is to make progress on when and how subjects bundle data to facilitate learning. Various principles are proposed to discipline the choices of analogy partitions in ABEE and of similarity classes in VE: the observation-based principle views the bundling as a consequence of a lack of accessibility to missing information in past interactions, the psychologically-based principle views categorizations as the consequence of observed similarity in early interactions, the culturally-based principle views the bundling of actions into similarity classes either as a consequence of a common labelling of actions or as a consequence of ethical considerations that lead us to think of different actions as having similar consequences. The impact of such principles will be studied both theoretically and experimentally with the goals of explaining a number of new phenomena and shifting the conventional wisdom in behavioural economics that has pointed out a number of anomalies in behaviors without systematically relating them to imperfections in the learning process. In addition, I will be concerned with the aggregation of different types of feedback such as data on one own performance or data on others’ attitudes in multi-context environments, as well as putting the proposed approach of learning through categories in the broader perspective of the literature on bounded rationality
Summary
The analogy-based expectation equilibrium (Jehiel, 2005) has been introduced to cope with strategic environments in which agents form their expectations by bundling data that come from different sources (see also the valuation equilibrium defined in Jehiel and Samet, 2007). An essential next step is to make progress on when and how subjects bundle data to facilitate learning. Various principles are proposed to discipline the choices of analogy partitions in ABEE and of similarity classes in VE: the observation-based principle views the bundling as a consequence of a lack of accessibility to missing information in past interactions, the psychologically-based principle views categorizations as the consequence of observed similarity in early interactions, the culturally-based principle views the bundling of actions into similarity classes either as a consequence of a common labelling of actions or as a consequence of ethical considerations that lead us to think of different actions as having similar consequences. The impact of such principles will be studied both theoretically and experimentally with the goals of explaining a number of new phenomena and shifting the conventional wisdom in behavioural economics that has pointed out a number of anomalies in behaviors without systematically relating them to imperfections in the learning process. In addition, I will be concerned with the aggregation of different types of feedback such as data on one own performance or data on others’ attitudes in multi-context environments, as well as putting the proposed approach of learning through categories in the broader perspective of the literature on bounded rationality
Max ERC Funding
1 523 217 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym m1ARNA
Project Transcriptomic m1A - a new key player in the epitranscriptome arena
Researcher (PI) Gideon RECHAVI
Host Institution (HI) MEDICAL RESEARCH INFRASTRUCTURE DEVELOPMENT AND HEALTH SERVICES FUND BY THE SHEBA MEDICAL CENTER
Call Details Advanced Grant (AdG), LS2, ERC-2016-ADG
Summary Reversible epigenetic modifications regulate gene expression to define cell fate and response to environmental stimuli. Gene expression tuning by DNA and chromatin modifications is well studied, yet the effect of RNA modifications on gene expression is only starting to be revealed. More than a hundred chemical modifications decorate RNAs, mainly non-coding ones, expanding their nucleotide vocabulary and mediating their diverse functions. Several modifications were globally mapped in mRNA. Only two, N6-methyladenosine (m6A) and N1-methyladenosine (m1A) exhibit a distinct topology alluding to a functional role. We pioneered the identification of m6A that is located preferentially in distinct transcript landmarks, mostly around stop codons and mediates transcript localization, splicing, decay and translation. We now identified m1A which decorates thousands of genes mainly in the start codon vicinity, upstream to the first splice site. Our preliminary results indicate that m1A dynamically responds to environmental stimuli and plays a central role in translation regulation. The regulation and functions of m1A are still terra incognita. Our objectives are to identify m1A writers and erasers, elucidate m1A readers and the mechanisms whereby m1A dictates downstream outcomes, particularly translation regulation. We will study m1A functions in response to physiologic stimuli and stress conditions in cells and animal models by manipulation of the m1A deposition machinery. As epigenetic marks operate in a context-dependent concerted way we will map m1A marks concomitantly with m6A to decipher their interplay in regulating gene expression via a putative “epigenetic RNA code”. The data obtained from parallel mapping of m1A and m6A at a single nucleotide and a single transcript resolution, will expose the interplay between these two mRNA modifications in the context of multilayer epigenetics. The study of m1A circuits may identify targets amenable to therapeutic manipulations.
Summary
Reversible epigenetic modifications regulate gene expression to define cell fate and response to environmental stimuli. Gene expression tuning by DNA and chromatin modifications is well studied, yet the effect of RNA modifications on gene expression is only starting to be revealed. More than a hundred chemical modifications decorate RNAs, mainly non-coding ones, expanding their nucleotide vocabulary and mediating their diverse functions. Several modifications were globally mapped in mRNA. Only two, N6-methyladenosine (m6A) and N1-methyladenosine (m1A) exhibit a distinct topology alluding to a functional role. We pioneered the identification of m6A that is located preferentially in distinct transcript landmarks, mostly around stop codons and mediates transcript localization, splicing, decay and translation. We now identified m1A which decorates thousands of genes mainly in the start codon vicinity, upstream to the first splice site. Our preliminary results indicate that m1A dynamically responds to environmental stimuli and plays a central role in translation regulation. The regulation and functions of m1A are still terra incognita. Our objectives are to identify m1A writers and erasers, elucidate m1A readers and the mechanisms whereby m1A dictates downstream outcomes, particularly translation regulation. We will study m1A functions in response to physiologic stimuli and stress conditions in cells and animal models by manipulation of the m1A deposition machinery. As epigenetic marks operate in a context-dependent concerted way we will map m1A marks concomitantly with m6A to decipher their interplay in regulating gene expression via a putative “epigenetic RNA code”. The data obtained from parallel mapping of m1A and m6A at a single nucleotide and a single transcript resolution, will expose the interplay between these two mRNA modifications in the context of multilayer epigenetics. The study of m1A circuits may identify targets amenable to therapeutic manipulations.
Max ERC Funding
2 457 500 €
Duration
Start date: 2017-07-01, End date: 2022-06-30
Project acronym MANANDNATURE
Project Man and Nature in Developing Countries
Researcher (PI) Robin BURGESS
Host Institution (HI) LONDON SCHOOL OF ECONOMICS AND POLITICAL SCIENCE
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary The growth required to lift a billion people out of extreme poverty will require large increases in natural resource extraction and energy consumption. The negative externalities this growth creates – through degradation of forests and oceans, pollution and climate change – will affect us all. This is a proposal to create a new body of research on natural resource management and energy use in developing countries. It is distinctive for four reasons. First, it brings novel, applied micro techniques from development economics to the study of environmental and energy economics. Second, it harnesses new data collection technologies using satellites and randomized control trials. Third, we pioneer the use of political economy approaches to understand the gap between de jure and de facto policies. Finally, we innovate on policy design by embedding researchers with policy partners to co-generate research and ensure that findings scale directly into policies.
On natural resources, we propose three projects which use newly-available satellite data. The first examines regression discontinuities along the Brazilian border to understand why deforestation has slowed in the Brazilian Amazon but not in neighbouring countries. The second employs structural modeling to look at how economic and political factors influence the ignition and spread of forest fires in Indonesia. The third looks at whether regulating access to parts of the ocean can enhance its productivity and ability to absorb carbon.
On energy, we propose three collaborative projects which employ randomized trials to look at how to improve access to energy. The first examines how to get consumers to pay for the electricity they use in contexts where theft, non-payment and mispricing of electricity are rife. The second estimates a demand curve for solar electricity to understand how solar may contribute to meeting rising energy demand. The third looks at impacts of grid expansion in a largely un-electrified country.
Summary
The growth required to lift a billion people out of extreme poverty will require large increases in natural resource extraction and energy consumption. The negative externalities this growth creates – through degradation of forests and oceans, pollution and climate change – will affect us all. This is a proposal to create a new body of research on natural resource management and energy use in developing countries. It is distinctive for four reasons. First, it brings novel, applied micro techniques from development economics to the study of environmental and energy economics. Second, it harnesses new data collection technologies using satellites and randomized control trials. Third, we pioneer the use of political economy approaches to understand the gap between de jure and de facto policies. Finally, we innovate on policy design by embedding researchers with policy partners to co-generate research and ensure that findings scale directly into policies.
On natural resources, we propose three projects which use newly-available satellite data. The first examines regression discontinuities along the Brazilian border to understand why deforestation has slowed in the Brazilian Amazon but not in neighbouring countries. The second employs structural modeling to look at how economic and political factors influence the ignition and spread of forest fires in Indonesia. The third looks at whether regulating access to parts of the ocean can enhance its productivity and ability to absorb carbon.
On energy, we propose three collaborative projects which employ randomized trials to look at how to improve access to energy. The first examines how to get consumers to pay for the electricity they use in contexts where theft, non-payment and mispricing of electricity are rife. The second estimates a demand curve for solar electricity to understand how solar may contribute to meeting rising energy demand. The third looks at impacts of grid expansion in a largely un-electrified country.
Max ERC Funding
1 932 655 €
Duration
Start date: 2017-12-01, End date: 2022-11-30
Project acronym MEDIACHINA
Project Social Media and Traditional Media in China: Political and Economic Effects
Researcher (PI) Carl David STRÖMBERG
Host Institution (HI) STOCKHOLMS UNIVERSITET
Call Details Advanced Grant (AdG), SH1, ERC-2016-ADG
Summary How is political accountability and firm performance in an autocracy affected by media? This project will analyse how economic and political outcomes in China are affected by social and traditional media. It will also use media content to measure factors that are otherwise difficult to observe, such as political networks and the trade-off between political and economic goals in Chinese firms. An explosion of social media use in China has produced an information shock to society and its leaders, also supplying a data shock to researchers, which is magnified by the digitization of traditional media content, and coupled with new methods for analysing this type of data, originating from the in big data and machine-learning literatures. As a result, a large set of previously unanswerable questions are now open for research.
In Qin, Strömberg and Wu (2016) we document this information shock, using a data set of over 13 billion social media posts from Sina Weibo (the Chinese equivalent of Twitter). We show that millions of posts concern sensitive topics such as organized protests and explicit accusations of top leaders of corruption. Traditional media is silent on these issues. We argue that the likely reason for the lighter censoring of social media is that the central government finds the information useful for monitoring officials, firms, and citizen unrest.
In this project, I will analyze the effect of this information shock on protests and strikes, the sales of counterfeit and substandard medicines, the promotion of local leaders, and coverage of censored events in traditional media. Together with a set of collaborator, I will study the effects of social media using the staggered introduction of Sina Weibo across geographic regions. I will also study the content, entry and exit of general-interest newspapers that are all controlled by different politicians. This is to investigate the trade-off between political and economic goals and political connections.
Summary
How is political accountability and firm performance in an autocracy affected by media? This project will analyse how economic and political outcomes in China are affected by social and traditional media. It will also use media content to measure factors that are otherwise difficult to observe, such as political networks and the trade-off between political and economic goals in Chinese firms. An explosion of social media use in China has produced an information shock to society and its leaders, also supplying a data shock to researchers, which is magnified by the digitization of traditional media content, and coupled with new methods for analysing this type of data, originating from the in big data and machine-learning literatures. As a result, a large set of previously unanswerable questions are now open for research.
In Qin, Strömberg and Wu (2016) we document this information shock, using a data set of over 13 billion social media posts from Sina Weibo (the Chinese equivalent of Twitter). We show that millions of posts concern sensitive topics such as organized protests and explicit accusations of top leaders of corruption. Traditional media is silent on these issues. We argue that the likely reason for the lighter censoring of social media is that the central government finds the information useful for monitoring officials, firms, and citizen unrest.
In this project, I will analyze the effect of this information shock on protests and strikes, the sales of counterfeit and substandard medicines, the promotion of local leaders, and coverage of censored events in traditional media. Together with a set of collaborator, I will study the effects of social media using the staggered introduction of Sina Weibo across geographic regions. I will also study the content, entry and exit of general-interest newspapers that are all controlled by different politicians. This is to investigate the trade-off between political and economic goals and political connections.
Max ERC Funding
1 716 970 €
Duration
Start date: 2018-01-01, End date: 2022-12-31
Project acronym SMALLOSTERY
Project Single-molecule spectroscopy of coordinated motions in allosteric proteins
Researcher (PI) Gilad HARAN
Host Institution (HI) WEIZMANN INSTITUTE OF SCIENCE
Call Details Advanced Grant (AdG), PE4, ERC-2016-ADG
Summary Critical for the function of many proteins, allosteric communication involves transmission of the effect of binding at one site of a protein to another through conformational changes. Yet the structural and dynamic basis for allostery remains poorly understood. In particular, there is no method to follow coordinated large-scale motions of domains and subunits in proteins as they occur. Since the subunits of allosteric proteins often contain multiple domains, any such method entails probing the dynamics along several intra-protein distances simultaneously.
This proposal aims at ameliorating this deficiency by creating the experimental framework for exploring time-dependent coordination of allosteric transitions of multiple units within proteins. Our methodology will rely on single-molecule FRET spectroscopy with multiple labels on the same protein and advanced analysis. We will explore fundamental issues in protein dynamics: relative motions of domains within subunits, propagation of conformational change between subunits, and synchronization of these motions by effector molecules.
To investigate these issues, we have carefully selected three model systems, each representing an important scenario of allosteric regulation. While the homo-oligomeric protein-folder GroEL conserves symmetry in a concerted transition between major structural states, the symmetry of the homo-oligomeric disaggregating machine ClpB is broken via a sequential transition. Symmetry is attained only after binding to DNA and ligands in the third system, the family of RXR heterodimers.
This exciting project will provide the very first catalogue of coordinated and time-ordered motions within and between subunits of allosteric proteins and the first measurement of the time scale of the conformational spread through a large protein. It will enhance dramatically our understanding of how allostery contributes to protein function, influencing future efforts to design drugs for allosteric proteins.
Summary
Critical for the function of many proteins, allosteric communication involves transmission of the effect of binding at one site of a protein to another through conformational changes. Yet the structural and dynamic basis for allostery remains poorly understood. In particular, there is no method to follow coordinated large-scale motions of domains and subunits in proteins as they occur. Since the subunits of allosteric proteins often contain multiple domains, any such method entails probing the dynamics along several intra-protein distances simultaneously.
This proposal aims at ameliorating this deficiency by creating the experimental framework for exploring time-dependent coordination of allosteric transitions of multiple units within proteins. Our methodology will rely on single-molecule FRET spectroscopy with multiple labels on the same protein and advanced analysis. We will explore fundamental issues in protein dynamics: relative motions of domains within subunits, propagation of conformational change between subunits, and synchronization of these motions by effector molecules.
To investigate these issues, we have carefully selected three model systems, each representing an important scenario of allosteric regulation. While the homo-oligomeric protein-folder GroEL conserves symmetry in a concerted transition between major structural states, the symmetry of the homo-oligomeric disaggregating machine ClpB is broken via a sequential transition. Symmetry is attained only after binding to DNA and ligands in the third system, the family of RXR heterodimers.
This exciting project will provide the very first catalogue of coordinated and time-ordered motions within and between subunits of allosteric proteins and the first measurement of the time scale of the conformational spread through a large protein. It will enhance dramatically our understanding of how allostery contributes to protein function, influencing future efforts to design drugs for allosteric proteins.
Max ERC Funding
2 484 722 €
Duration
Start date: 2017-05-01, End date: 2022-04-30
Project acronym SystGeneEdit
Project Dissecting quantitative traits and their underlying genetic interactions via systematic genome editing
Researcher (PI) Lars Steinmetz
Host Institution (HI) EUROPEAN MOLECULAR BIOLOGY LABORATORY
Call Details Advanced Grant (AdG), LS2, ERC-2016-ADG
Summary Despite the ubiquity of genome sequence data, unravelling the contributions of genetic variation to phenotypic diversity remains one of the greatest challenges in genomics. This is partly due to our very limited knowledge of how multiple variations combine to create phenotypes. There is a clear need for a systematic, perturbation-based approach to study the phenotypic consequences of genetic variants in different genomic and environmental contexts. Previous efforts have primarily used loss-of-function or overexpression approaches, but it is known that subtle, naturally occurring variants have the most relevance for complex, quantitative traits. Our proposal aims to dissect these effects by systematically engineering and functionally profiling naturally occurring single-nucleotide variants (SNVs) and small insertion/deletion polymorphisms (indels) in the S. cerevisiae species in three diverse genetic backgrounds. To generate such an unprecedented collection, we will apply a high-throughput CRISPR approach that allows rapid isolation of sequence-verified strains. DNA barcodes integrated into the genome of each strain will enable pooled, competitive growth, which will reveal how variants modulate fitness as a function of environment and genetic background. We will test our collection for pairwise and higher order interactions, assay their impact on cellular processes and dissect pleiotropic roles of highly connected genes. Our work will circumvent the key limitations in current high-throughput genome editing screens and enable the largest interrogation of the functional impact of genetic variation in different environmental and genetic contexts to date. The combined insights and tools generated by our work will aid in developing predictive models of the effects of genetic variation within specific environmental and biological contexts, providing guiding principles for understanding the consequences of human genetic variation.
Summary
Despite the ubiquity of genome sequence data, unravelling the contributions of genetic variation to phenotypic diversity remains one of the greatest challenges in genomics. This is partly due to our very limited knowledge of how multiple variations combine to create phenotypes. There is a clear need for a systematic, perturbation-based approach to study the phenotypic consequences of genetic variants in different genomic and environmental contexts. Previous efforts have primarily used loss-of-function or overexpression approaches, but it is known that subtle, naturally occurring variants have the most relevance for complex, quantitative traits. Our proposal aims to dissect these effects by systematically engineering and functionally profiling naturally occurring single-nucleotide variants (SNVs) and small insertion/deletion polymorphisms (indels) in the S. cerevisiae species in three diverse genetic backgrounds. To generate such an unprecedented collection, we will apply a high-throughput CRISPR approach that allows rapid isolation of sequence-verified strains. DNA barcodes integrated into the genome of each strain will enable pooled, competitive growth, which will reveal how variants modulate fitness as a function of environment and genetic background. We will test our collection for pairwise and higher order interactions, assay their impact on cellular processes and dissect pleiotropic roles of highly connected genes. Our work will circumvent the key limitations in current high-throughput genome editing screens and enable the largest interrogation of the functional impact of genetic variation in different environmental and genetic contexts to date. The combined insights and tools generated by our work will aid in developing predictive models of the effects of genetic variation within specific environmental and biological contexts, providing guiding principles for understanding the consequences of human genetic variation.
Max ERC Funding
2 499 995 €
Duration
Start date: 2017-11-01, End date: 2022-10-31