Project acronym ACTINONSRF
Project MAL: an actin-regulated SRF transcriptional coactivator
Researcher (PI) Richard Treisman
Host Institution (HI) THE FRANCIS CRICK INSTITUTE LIMITED
Country United Kingdom
Call Details Advanced Grant (AdG), LS1, ERC-2010-AdG_20100317
Summary MAL: an actin-regulated SRF transcriptional coactivator
Recent years have seen a revitalised interest in the role of actin in nuclear processes, but the molecular mechanisms involved remain largely unexplored. We will elucidate the molecular basis for the actin-based control of the SRF transcriptional coactivator, MAL. SRF controls transcription through two families of coactivators, the actin-binding MRTFs (MAL, Mkl2), which couple its activity to cytoskeletal dynamics, and the ERK-regulated TCFs (Elk-1, SAP-1, Net). MAL subcellular localisation and transcriptional activity responds to signal-induced changes in G-actin concentration, which are sensed by its actin-binding N-terminal RPEL domain. Members of a second family of RPEL proteins, the Phactrs, also exhibit actin-regulated nucleocytoplasmic shuttling. The proposal addresses the following novel features of actin biology:
¿ Actin as a transcriptional regulator
¿ Actin as a signalling molecule
¿ Actin-binding proteins as targets for regulation by actin, rather than regulators of actin function
We will analyse the sequences and proteins involved in actin-regulated nucleocytoplasmic shuttling, using structural biology and biochemistry to analyse its control by changes in actin-RPEL domain interactions. We will characterise the dynamics of shuttling, and develop reporters for changes in actin-MAL interaction for analysis of pathway activation in vivo. We will identify genes controlling MAL itself, and the balance between the nuclear and cytoplasmic actin pools. The mechanism by which actin represses transcriptional activation by MAL in the nucleus, and its relation to MAL phosphorylation, will be elucidated. Finally, we will map MRTF and TCF cofactor recruitment to SRF targets on a genome-wide scale, and identify the steps in transcription controlled by actin-MAL interaction.
Summary
MAL: an actin-regulated SRF transcriptional coactivator
Recent years have seen a revitalised interest in the role of actin in nuclear processes, but the molecular mechanisms involved remain largely unexplored. We will elucidate the molecular basis for the actin-based control of the SRF transcriptional coactivator, MAL. SRF controls transcription through two families of coactivators, the actin-binding MRTFs (MAL, Mkl2), which couple its activity to cytoskeletal dynamics, and the ERK-regulated TCFs (Elk-1, SAP-1, Net). MAL subcellular localisation and transcriptional activity responds to signal-induced changes in G-actin concentration, which are sensed by its actin-binding N-terminal RPEL domain. Members of a second family of RPEL proteins, the Phactrs, also exhibit actin-regulated nucleocytoplasmic shuttling. The proposal addresses the following novel features of actin biology:
¿ Actin as a transcriptional regulator
¿ Actin as a signalling molecule
¿ Actin-binding proteins as targets for regulation by actin, rather than regulators of actin function
We will analyse the sequences and proteins involved in actin-regulated nucleocytoplasmic shuttling, using structural biology and biochemistry to analyse its control by changes in actin-RPEL domain interactions. We will characterise the dynamics of shuttling, and develop reporters for changes in actin-MAL interaction for analysis of pathway activation in vivo. We will identify genes controlling MAL itself, and the balance between the nuclear and cytoplasmic actin pools. The mechanism by which actin represses transcriptional activation by MAL in the nucleus, and its relation to MAL phosphorylation, will be elucidated. Finally, we will map MRTF and TCF cofactor recruitment to SRF targets on a genome-wide scale, and identify the steps in transcription controlled by actin-MAL interaction.
Max ERC Funding
1 889 995 €
Duration
Start date: 2011-10-01, End date: 2017-09-30
Project acronym COSMIWAY
Project From the Milky Way to the cosmic large-scale structure
Researcher (PI) Carlos Silvestre Frenk
Host Institution (HI) UNIVERSITY OF DURHAM
Country United Kingdom
Call Details Advanced Grant (AdG), PE9, ERC-2010-AdG_20100224
Summary Wide field panoramic telescopes will become a major force in astronomy over the next decade. They will address a rich set of scientific problems, from ``killer asteroids'' to the cosmic dark energy. Pan-STARRS-1 (PS1), built by the University of Hawaii, is the first of this new generation of telescopes. European astronomers in Germany and the UK, including in the PI's host institute, make up a large fraction of the Science Consortium that, over the next 4 years, will exploit the data. This proposal is focused on the use of PS1 for cosmology. I propose a programme that combines state-of-the-art cosmological simulations and modelling with high-level analyses of the data. The goal is to test core assumptions of the standard cosmogonic model, LCDM, on scales and at epochs where it has not been tested before and where it can, in principle, be ruled out. At the same time, these tests will advance our understanding of the main constituents of our universe (dark matter and dark energy) and of the processes of galaxy formation and evolution. Two types of structure at opposite ends of the cosmological scale, the Milky Way and the large-scale distribution of galaxies at redshifts z<1.5, are ideally suited to this purpose. Studies of the Milky Way will test LCDM predictions for the hierarchical assembly of galaxies and the structure of their dark matter halos. Studies of the galaxy distribution will test LCDM predictions for the growth of structure and the connection between galaxies and dark matter. To link theory and data, I will construct mock catalogues using very large cosmological simulations and sophisticated modelling techniques. These catalogues will have a much broader applicability that just PS1 and I will make them publicly available using e-science techniques.
Summary
Wide field panoramic telescopes will become a major force in astronomy over the next decade. They will address a rich set of scientific problems, from ``killer asteroids'' to the cosmic dark energy. Pan-STARRS-1 (PS1), built by the University of Hawaii, is the first of this new generation of telescopes. European astronomers in Germany and the UK, including in the PI's host institute, make up a large fraction of the Science Consortium that, over the next 4 years, will exploit the data. This proposal is focused on the use of PS1 for cosmology. I propose a programme that combines state-of-the-art cosmological simulations and modelling with high-level analyses of the data. The goal is to test core assumptions of the standard cosmogonic model, LCDM, on scales and at epochs where it has not been tested before and where it can, in principle, be ruled out. At the same time, these tests will advance our understanding of the main constituents of our universe (dark matter and dark energy) and of the processes of galaxy formation and evolution. Two types of structure at opposite ends of the cosmological scale, the Milky Way and the large-scale distribution of galaxies at redshifts z<1.5, are ideally suited to this purpose. Studies of the Milky Way will test LCDM predictions for the hierarchical assembly of galaxies and the structure of their dark matter halos. Studies of the galaxy distribution will test LCDM predictions for the growth of structure and the connection between galaxies and dark matter. To link theory and data, I will construct mock catalogues using very large cosmological simulations and sophisticated modelling techniques. These catalogues will have a much broader applicability that just PS1 and I will make them publicly available using e-science techniques.
Max ERC Funding
2 266 850 €
Duration
Start date: 2011-05-01, End date: 2017-04-30
Project acronym CRIPTON
Project Role of ncRNAs in Chromatin and Transcription
Researcher (PI) Tony Kouzarides
Host Institution (HI) THE CHANCELLOR MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE
Country United Kingdom
Call Details Advanced Grant (AdG), LS1, ERC-2010-AdG_20100317
Summary The human genome is highly transcribed, with over 90% of sequences contributing to the production of RNA. The function of the vast majority of these RNAs is unknown. Evidence over many years has revealed that transcription factors and chromatin regulators are associated with a variety of non-coding (nc)RNAs, but their function remains largely unknown. There are a few cases where a role has been ascribed for ncRNAs in transcription, but no clear mechanistic insight has been defined yet. We predict that many of the newly identified ncRNAs emanating from the genome will play a role in transcriptional processes. We intend to identify and characterise such ncRNAs. This will take place in two phases. In the first phase we will use biochemical approaches to identify ncRNAs involved in the regulation of chromatin and transcription. Our investigations will focus on proteins leading to the induction of pluripotency and oncogenesis. ncRNAs associated with such proteins will be identified using targeted screens. In the second phase, the importance of these RNAs in determining pluripotency and oncogenesis will be analysed. In addition, a variety of molecular approaches will be used to investigate the mechanism by which these ncRNAs regulate the function of the proteins or complexes they associate with. One particular hypothesis we will explore is that such ncRNAs play a role in guiding proteins to DNA sequences, via the formation of RNA/DNA triplexes. This concerted and focused analysis will provide mechanistic insights into the functions of ncRNAs in transcriptional regulation and validate their role in key biological processes. The identification of such new ncRNA-regulated pathways may open up new avenues for therapeutic intervention.
Summary
The human genome is highly transcribed, with over 90% of sequences contributing to the production of RNA. The function of the vast majority of these RNAs is unknown. Evidence over many years has revealed that transcription factors and chromatin regulators are associated with a variety of non-coding (nc)RNAs, but their function remains largely unknown. There are a few cases where a role has been ascribed for ncRNAs in transcription, but no clear mechanistic insight has been defined yet. We predict that many of the newly identified ncRNAs emanating from the genome will play a role in transcriptional processes. We intend to identify and characterise such ncRNAs. This will take place in two phases. In the first phase we will use biochemical approaches to identify ncRNAs involved in the regulation of chromatin and transcription. Our investigations will focus on proteins leading to the induction of pluripotency and oncogenesis. ncRNAs associated with such proteins will be identified using targeted screens. In the second phase, the importance of these RNAs in determining pluripotency and oncogenesis will be analysed. In addition, a variety of molecular approaches will be used to investigate the mechanism by which these ncRNAs regulate the function of the proteins or complexes they associate with. One particular hypothesis we will explore is that such ncRNAs play a role in guiding proteins to DNA sequences, via the formation of RNA/DNA triplexes. This concerted and focused analysis will provide mechanistic insights into the functions of ncRNAs in transcriptional regulation and validate their role in key biological processes. The identification of such new ncRNA-regulated pathways may open up new avenues for therapeutic intervention.
Max ERC Funding
2 141 470 €
Duration
Start date: 2011-05-01, End date: 2017-04-30
Project acronym DDRREAM
Project DNA-Damage responses: Regulation and mechanisms
Researcher (PI) Stephen Philip Jackson
Host Institution (HI) THE CHANCELLOR MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE
Country United Kingdom
Call Details Advanced Grant (AdG), LS1, ERC-2010-AdG_20100317
Summary The prime objective for every life form is to deliver its genetic material, intact, to the next generation. Each human cell receives tens-of-thousands of DNA lesions per day. These lesions can block genome replication and transcription, and if not repaired or repaired incorrectly, they lead to mutations or wider genome aberrations that threaten cell viability. To counter such threats, life has evolved the DNA-damage response (DDR), to detect DNA damage, signal its presence and mediate its repair. DDR events impact on many cellular processes and, crucially, prevent diverse human diseases that include cancer, neurodegenerative diseases, immune-deficiencies and premature ageing. While much progress has been made in identifying DDR proteins, much remains to be learned about the molecular and cellular functions that they control. Furthermore, the frequent reporting of new DDR proteins in the literature suggests that many others await identification. The main goals for the proposed research are to: identify important new DDR-proteins and DDR-modulators, particularly those responding to DNA double-strand breaks (DSBs); provide mechanistic insights into how these proteins function; and determine how DDR events are affected by chromatin structure, by molecular chaperones and components of the Ubiquitin and Sumo systems. To achieve these ends, we will use molecular biology, biochemical, cell-biology and molecular genetics approaches, including synthetic-lethal and phenotypic-suppression screening methods in human cells and in the nematode worm. This work will not only be of academic importance, but will also indicate how DDR dysfunction can cause human disease and how such diseases might be better diagnosed and treated.
Summary
The prime objective for every life form is to deliver its genetic material, intact, to the next generation. Each human cell receives tens-of-thousands of DNA lesions per day. These lesions can block genome replication and transcription, and if not repaired or repaired incorrectly, they lead to mutations or wider genome aberrations that threaten cell viability. To counter such threats, life has evolved the DNA-damage response (DDR), to detect DNA damage, signal its presence and mediate its repair. DDR events impact on many cellular processes and, crucially, prevent diverse human diseases that include cancer, neurodegenerative diseases, immune-deficiencies and premature ageing. While much progress has been made in identifying DDR proteins, much remains to be learned about the molecular and cellular functions that they control. Furthermore, the frequent reporting of new DDR proteins in the literature suggests that many others await identification. The main goals for the proposed research are to: identify important new DDR-proteins and DDR-modulators, particularly those responding to DNA double-strand breaks (DSBs); provide mechanistic insights into how these proteins function; and determine how DDR events are affected by chromatin structure, by molecular chaperones and components of the Ubiquitin and Sumo systems. To achieve these ends, we will use molecular biology, biochemical, cell-biology and molecular genetics approaches, including synthetic-lethal and phenotypic-suppression screening methods in human cells and in the nematode worm. This work will not only be of academic importance, but will also indicate how DDR dysfunction can cause human disease and how such diseases might be better diagnosed and treated.
Max ERC Funding
2 482 492 €
Duration
Start date: 2011-05-01, End date: 2016-04-30
Project acronym FCCA
Project Five Challenges in Computational Anatomy
Researcher (PI) Darryl Holm
Host Institution (HI) IMPERIAL COLLEGE OF SCIENCE TECHNOLOGY AND MEDICINE
Country United Kingdom
Call Details Advanced Grant (AdG), PE1, ERC-2010-AdG_20100224
Summary New medical imaging technologies encode human anatomy in a wide variety of data structures. Computational Anatomy (CA) offers an approach to synthesize this plethora of data by comparison of anatomical features using smooth invertible transformations specific to the data structure.
This proposal is for work to develop new mathematical and numerical methods for image analysis in the framework of CA, aimed at meeting the following five challenges in image analysis for the comparison and interpolation of shapes in biomedical images of the heart and the brain.
1. Data structure: Develop a unified approach for registering images encoded in a wide variety of data structures. The unifying concept in our approach is the momentum map, a fundamental concept from the theory of Lie group transformations.
2. Data fusion: After placing the transformations of the variety of data structures into the same conceptual framework using momentum maps, synthesise (fuse) their multiple modalities of information by accounting for the different transformation properties of the different data structures under smooth invertible maps.
3. Multiple resolutions: Develop the momentum map framework to enable registration of data at multiple resolutions by concatenating the Lie group transformations that define the momentum maps.
4. Time-varying (4D) images: Treat time-varying images in this geometric framework by matching snapshots in time using geodesic splines that interpolate the image snapshot from one time to another. Quantity the effects of noise and uncertainty in 4D image analysis.
5. Changes in image topology: Extend the transformative approach to allow changes in topology in passing between images by using the method of metamorphosis.
Simply put, the five challenges are: to 1. register images of different data structures and 2. combine them, even at 3. different resolutions; then do the same things with 4. splines and 5. metamorphosis, including noise.
Summary
New medical imaging technologies encode human anatomy in a wide variety of data structures. Computational Anatomy (CA) offers an approach to synthesize this plethora of data by comparison of anatomical features using smooth invertible transformations specific to the data structure.
This proposal is for work to develop new mathematical and numerical methods for image analysis in the framework of CA, aimed at meeting the following five challenges in image analysis for the comparison and interpolation of shapes in biomedical images of the heart and the brain.
1. Data structure: Develop a unified approach for registering images encoded in a wide variety of data structures. The unifying concept in our approach is the momentum map, a fundamental concept from the theory of Lie group transformations.
2. Data fusion: After placing the transformations of the variety of data structures into the same conceptual framework using momentum maps, synthesise (fuse) their multiple modalities of information by accounting for the different transformation properties of the different data structures under smooth invertible maps.
3. Multiple resolutions: Develop the momentum map framework to enable registration of data at multiple resolutions by concatenating the Lie group transformations that define the momentum maps.
4. Time-varying (4D) images: Treat time-varying images in this geometric framework by matching snapshots in time using geodesic splines that interpolate the image snapshot from one time to another. Quantity the effects of noise and uncertainty in 4D image analysis.
5. Changes in image topology: Extend the transformative approach to allow changes in topology in passing between images by using the method of metamorphosis.
Simply put, the five challenges are: to 1. register images of different data structures and 2. combine them, even at 3. different resolutions; then do the same things with 4. splines and 5. metamorphosis, including noise.
Max ERC Funding
1 740 000 €
Duration
Start date: 2011-05-01, End date: 2017-04-30
Project acronym FUTURE-PHARMA
Project Exploiting plants for the production of future generation recombinant pharmaceuticals
Researcher (PI) Julian K-C. Ma
Host Institution (HI) ST GEORGE'S HOSPITAL MEDICAL SCHOOL
Country United Kingdom
Call Details Advanced Grant (AdG), LS9, ERC-2010-AdG_20100317
Summary Biopharmaceutical proteins are typically produced in cultivated mammalian cells, a costly process with limited scalability. Thus products such as monoclonal antibodies are very expensive and often beyond the reach of the world’s poor. The problem is compounded by the fact that important strategies for preventing diseases such as HIV and rabies typically involve large doses of multiple antibodies and other virucidal proteins. Plants have emerged as alternative production platforms for biopharmaceutical proteins because they are less expensive, more scalable and potentially could be transferred to developing countries. Recently, the first products have reached the clinic, but many of them are follow-on products already manufactured in mammalian cells.
Here, Prof Julian Ma (St George’s Hospital Medical School, London, UK) and Prof Dr Rainer Fischer (RWTH Aachen University, Germany) aim to develop innovative ways to use plants for the economical, safe and sustainable production of combinations of active pharmaceutical ingredients (APIs) based on recombinant proteins, thereby pushing the boundaries of what can be achieved in plants beyond current capabilities with fermenter-based systems.
We will focus on the production of antibodies and lectins against HIV and rabies, with the aim of generating GMP-compliant microbicidal cocktails for evaluation in human trials. Key aspects of the project will include the production of APIs both individually and as combinations in plants, the development of technologies allowing the introduction of transgenes into pre-determined genomic loci, the use of click chemistry to optimize the production and stoichiometry of recombinant protein cocktails, the development of candidate products for both topical and parenteral administration and the development of downstream processing concepts that are transferrable to developing countries, such as minimal processing and processing trains based on pre-assembled disposable modules. We will complete one Phase I clinical trials, each testing a plant-derived product that advances the field in a significant way
Summary
Biopharmaceutical proteins are typically produced in cultivated mammalian cells, a costly process with limited scalability. Thus products such as monoclonal antibodies are very expensive and often beyond the reach of the world’s poor. The problem is compounded by the fact that important strategies for preventing diseases such as HIV and rabies typically involve large doses of multiple antibodies and other virucidal proteins. Plants have emerged as alternative production platforms for biopharmaceutical proteins because they are less expensive, more scalable and potentially could be transferred to developing countries. Recently, the first products have reached the clinic, but many of them are follow-on products already manufactured in mammalian cells.
Here, Prof Julian Ma (St George’s Hospital Medical School, London, UK) and Prof Dr Rainer Fischer (RWTH Aachen University, Germany) aim to develop innovative ways to use plants for the economical, safe and sustainable production of combinations of active pharmaceutical ingredients (APIs) based on recombinant proteins, thereby pushing the boundaries of what can be achieved in plants beyond current capabilities with fermenter-based systems.
We will focus on the production of antibodies and lectins against HIV and rabies, with the aim of generating GMP-compliant microbicidal cocktails for evaluation in human trials. Key aspects of the project will include the production of APIs both individually and as combinations in plants, the development of technologies allowing the introduction of transgenes into pre-determined genomic loci, the use of click chemistry to optimize the production and stoichiometry of recombinant protein cocktails, the development of candidate products for both topical and parenteral administration and the development of downstream processing concepts that are transferrable to developing countries, such as minimal processing and processing trains based on pre-assembled disposable modules. We will complete one Phase I clinical trials, each testing a plant-derived product that advances the field in a significant way
Max ERC Funding
3 488 863 €
Duration
Start date: 2011-08-01, End date: 2019-01-31
Project acronym IMPRESS
Project Integral membrane proteins resolution of stoichiometry and structure
Researcher (PI) Carol Vivien Robinson
Host Institution (HI) THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
Country United Kingdom
Call Details Advanced Grant (AdG), LS1, ERC-2010-AdG_20100317
Summary Our recent discovery, that large integral membrane protein complexes can survive intact in the mass spectrometer, prompts many new experiments to understand the mechanism of their release from micelles and to maximise the impact of this finding. We propose to examine the structure of membrane complexes after their release from micelles in the gas phase. We will apply ion mobility mass spectrometry to extract collision cross sections of membrane complexes of known structure and compare these with those calculated form atomic coordinates. Conditions will be optimised to minimise the distortion of structure. More controlled release of membrane complexes from micelles will be investigated using photo-activation. To do this we will explore properties of detergents incorporating chromophores, with infra red laser activation to activate the micelle selectively without perturbing the membrane protein complex. We also propose to develop methods for determining structures of lipids bound specifically in membrane protein interfaces and assess their effects on the stability and stoichiometry of the complex. To visualise these complexes in the absence of micelles we propose to 'soft land' membrane protein complexes on electron microscopy grids, targeting components by virtue of their mass to charge. We will apply these methods to some of the most challenging and controversial membrane protein complexes including EmrE, the intact ATP synthases, the M2 proton channel of the influenza A virus, the P-type ATPases and the ATP-sensitive potassium channel. Overall, through this ambitious program of research, we plan to shed new light on membrane protein complexes and the role of lipids and small molecules in stabilising and modifying their properties.
Summary
Our recent discovery, that large integral membrane protein complexes can survive intact in the mass spectrometer, prompts many new experiments to understand the mechanism of their release from micelles and to maximise the impact of this finding. We propose to examine the structure of membrane complexes after their release from micelles in the gas phase. We will apply ion mobility mass spectrometry to extract collision cross sections of membrane complexes of known structure and compare these with those calculated form atomic coordinates. Conditions will be optimised to minimise the distortion of structure. More controlled release of membrane complexes from micelles will be investigated using photo-activation. To do this we will explore properties of detergents incorporating chromophores, with infra red laser activation to activate the micelle selectively without perturbing the membrane protein complex. We also propose to develop methods for determining structures of lipids bound specifically in membrane protein interfaces and assess their effects on the stability and stoichiometry of the complex. To visualise these complexes in the absence of micelles we propose to 'soft land' membrane protein complexes on electron microscopy grids, targeting components by virtue of their mass to charge. We will apply these methods to some of the most challenging and controversial membrane protein complexes including EmrE, the intact ATP synthases, the M2 proton channel of the influenza A virus, the P-type ATPases and the ATP-sensitive potassium channel. Overall, through this ambitious program of research, we plan to shed new light on membrane protein complexes and the role of lipids and small molecules in stabilising and modifying their properties.
Max ERC Funding
2 100 155 €
Duration
Start date: 2011-06-01, End date: 2016-05-31
Project acronym RECOS
Project Rethinking Comparative Syntax
Researcher (PI) Ian Gareth Roberts
Host Institution (HI) THE CHANCELLOR MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE
Country United Kingdom
Call Details Advanced Grant (AdG), SH4, ERC-2010-AdG_20100407
Summary "This project aims to break new ground by reconceptualising the principles-and-parameters approach to comparative syntax, retaining its strengths and attempting to deal with its perceived weaknesses. The central idea is to organise the parameters of Universal Grammar into hierarchies, which define the ways in which properties of individually variant categories may act in concert; this creates macroparametric effects from the combined action of many microparameters. The highest position in a hierarchy defines a macroparameter, a major typological property, lower positions define successively more local properties. Parameter-setting in language acquisition starts at the highest position as this is the simplest choice; acquirers will ""move down the hierarchy"" when confronted with primary linguistic data incompatible with a high setting. Hence the hierarchies simultaneously define learning paths and typological properties. The main task of the project, and most of the time of the research team working on it, will be devoted to attempting to work out on the basis of cross-linguistic data the precise form of major parts of the hierarchies, thus subjecting the theoretical predictions to rigorous empirical testing. This will be done on the basis of secondary data from grammars, from on-line databases (The World Atlas of Languages Structures, WALS, and the Syntactic Structures of the World’s Languages, SSWL), and, where feasible, from native-speaker consultants. The form of the hierarchies makes predictions concerning acquisition, markedness and language change. The project aims to investigate five hierarchies: those determining word-order, null arguments, word structure, discourse-configurationality and case/agreement alignment. These five hierarchies, although not exhaustive, combine to give a typological footprint of many languages, as well as providing the basis for the study of the interaction of micro- and macroparametric interactions."
Summary
"This project aims to break new ground by reconceptualising the principles-and-parameters approach to comparative syntax, retaining its strengths and attempting to deal with its perceived weaknesses. The central idea is to organise the parameters of Universal Grammar into hierarchies, which define the ways in which properties of individually variant categories may act in concert; this creates macroparametric effects from the combined action of many microparameters. The highest position in a hierarchy defines a macroparameter, a major typological property, lower positions define successively more local properties. Parameter-setting in language acquisition starts at the highest position as this is the simplest choice; acquirers will ""move down the hierarchy"" when confronted with primary linguistic data incompatible with a high setting. Hence the hierarchies simultaneously define learning paths and typological properties. The main task of the project, and most of the time of the research team working on it, will be devoted to attempting to work out on the basis of cross-linguistic data the precise form of major parts of the hierarchies, thus subjecting the theoretical predictions to rigorous empirical testing. This will be done on the basis of secondary data from grammars, from on-line databases (The World Atlas of Languages Structures, WALS, and the Syntactic Structures of the World’s Languages, SSWL), and, where feasible, from native-speaker consultants. The form of the hierarchies makes predictions concerning acquisition, markedness and language change. The project aims to investigate five hierarchies: those determining word-order, null arguments, word structure, discourse-configurationality and case/agreement alignment. These five hierarchies, although not exhaustive, combine to give a typological footprint of many languages, as well as providing the basis for the study of the interaction of micro- and macroparametric interactions."
Max ERC Funding
2 477 106 €
Duration
Start date: 2011-06-01, End date: 2017-05-31
Project acronym TRANSINTEG
Project Transcription and the maintenance of genome integrity
Researcher (PI) Jesper Qualmann Svejstrup
Host Institution (HI) THE FRANCIS CRICK INSTITUTE LIMITED
Country United Kingdom
Call Details Advanced Grant (AdG), LS1, ERC-2010-AdG_20100317
Summary Maintaining genome integrity is crucial, especially in protein-encoding genes. DNA damage in genes can give rise to harmful mutations, but it can also directly obstruct the progress of transcribing RNA polymerase II (RNAPII), thereby blocking gene expression. Not surprisingly, repair pathways have evolved that specifically target lesions that stop RNAPII during its journey across a gene, so-called transcription-coupled repair pathways. As an alternative and ¿last resort¿, damage-stalled RNAPII can also be permanently removed by ubiquitylation/degradation, clearing the gene for repair by other means. Together, transcription-coupled repair and RNAPII ubiquitylation constitute an essential axis in the response to DNA damage.
Conversely, while transcription is essential and therefore protected by a variety of mechanisms, it also itself comes at a cost for genome integrity. For example, high levels of transcription are correlated with breaks at fragile chromosome sites, mutagenesis and elevated levels of DNA recombination. Research into how the genome-destabilizing effects of transcription are minimized is still at an early stage, but insight into this research area is essential for our general appreciation of the regulatory mechanisms at play in the interface between transcription and other DNA-related processes, as well as for the understanding of processes underlying genome instability.
This proposal describes how funding from the ERC will enable us to use a multi-disciplinary approach to shed new light on fundamental and disease-relevant processes, which are crucial for maintaining genome integrity during active transcription.
Summary
Maintaining genome integrity is crucial, especially in protein-encoding genes. DNA damage in genes can give rise to harmful mutations, but it can also directly obstruct the progress of transcribing RNA polymerase II (RNAPII), thereby blocking gene expression. Not surprisingly, repair pathways have evolved that specifically target lesions that stop RNAPII during its journey across a gene, so-called transcription-coupled repair pathways. As an alternative and ¿last resort¿, damage-stalled RNAPII can also be permanently removed by ubiquitylation/degradation, clearing the gene for repair by other means. Together, transcription-coupled repair and RNAPII ubiquitylation constitute an essential axis in the response to DNA damage.
Conversely, while transcription is essential and therefore protected by a variety of mechanisms, it also itself comes at a cost for genome integrity. For example, high levels of transcription are correlated with breaks at fragile chromosome sites, mutagenesis and elevated levels of DNA recombination. Research into how the genome-destabilizing effects of transcription are minimized is still at an early stage, but insight into this research area is essential for our general appreciation of the regulatory mechanisms at play in the interface between transcription and other DNA-related processes, as well as for the understanding of processes underlying genome instability.
This proposal describes how funding from the ERC will enable us to use a multi-disciplinary approach to shed new light on fundamental and disease-relevant processes, which are crucial for maintaining genome integrity during active transcription.
Max ERC Funding
1 950 000 €
Duration
Start date: 2011-05-01, End date: 2016-04-30
Project acronym WORDS
Project WORDS: Asymmetry, change and processing in phonological mental representation
Researcher (PI) Aditi Lahiri
Host Institution (HI) THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
Country United Kingdom
Call Details Advanced Grant (AdG), SH4, ERC-2010-AdG_20100407
Summary In the most general terms, the novel objective of the proposed project is to investigate the abstract nature of the mental phonological representations of words which is claimed to govern the (i) time-course of on-line word-recognition and (ii) the temporal dimension of historical development.
The project will pursue four research questions, where the answers to each call for a dialogue between a variety of disciplines:
A. WHAT is the nature and phonological structure of mental representations of WORDS and HOW are they constrained?
B. HOW are these representations processed and accessed in the course of everyday communication?
C. HOW and WHY do representations change, while sometimes tenaciously remaining constant over time?
D. CAN the hypotheses and predictions about mental representations be computationally modelled?
The PI complements her strong linguistics research profile with her forte in psycholinguistics and neurolinguistics. The hypothesis we will test is that the abstract representation of words in the adult brain, which handles asymmetric phonological variation in speech and is measurable by reaction time and brain-imaging techniques, is also reflected in the development of words as indicated by historical data from manuscripts.
Summary
In the most general terms, the novel objective of the proposed project is to investigate the abstract nature of the mental phonological representations of words which is claimed to govern the (i) time-course of on-line word-recognition and (ii) the temporal dimension of historical development.
The project will pursue four research questions, where the answers to each call for a dialogue between a variety of disciplines:
A. WHAT is the nature and phonological structure of mental representations of WORDS and HOW are they constrained?
B. HOW are these representations processed and accessed in the course of everyday communication?
C. HOW and WHY do representations change, while sometimes tenaciously remaining constant over time?
D. CAN the hypotheses and predictions about mental representations be computationally modelled?
The PI complements her strong linguistics research profile with her forte in psycholinguistics and neurolinguistics. The hypothesis we will test is that the abstract representation of words in the adult brain, which handles asymmetric phonological variation in speech and is measurable by reaction time and brain-imaging techniques, is also reflected in the development of words as indicated by historical data from manuscripts.
Max ERC Funding
2 367 789 €
Duration
Start date: 2011-10-01, End date: 2016-09-30